메뉴 건너뛰기




Volumn 289, Issue 7, 2014, Pages 3901-3912

Ribosomal protein s6, a target of rapamycin, is involved in the regulation of rRNA genes by possible epigenetic changes in arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

EPIGENETICS; HISTONE DEACETYLASE; RIBOSOMAL RNA (RRNA); STRESS RESPONSE; TOR;

EID: 84894223109     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M113.515015     Document Type: Article
Times cited : (66)

References (45)
  • 1
    • 33846549173 scopus 로고    scopus 로고
    • A housekeeper with power of attorney: The rRNA genes in ribosome biogenesis
    • Moss, T., Langlois, F., Gagnon-Kugler, T., and Stefanovsky, V. (2007) A housekeeper with power of attorney: the rRNA genes in ribosome biogenesis. Cell. Mol. Life Sci. 64, 29-49
    • (2007) Cell. Mol. Life Sci. , vol.64 , pp. 29-49
    • Moss, T.1    Langlois, F.2    Gagnon-Kugler, T.3    Stefanovsky, V.4
  • 2
    • 70549086622 scopus 로고    scopus 로고
    • Growth control and ribosome biogenesis
    • Lempiäinen, H., and Shore, D. (2009) Growth control and ribosome biogenesis. Curr. Opin. Cell Biol. 21, 855-863
    • (2009) Curr. Opin. Cell Biol. , vol.21 , pp. 855-863
    • Lempiäinen, H.1    Shore, D.2
  • 3
    • 33750044901 scopus 로고    scopus 로고
    • Ribosome biogenesis and cell growth: MTOR coordinates transcription by all three classes of nuclear RNA polymerases
    • Mayer, C., and Grummt, I. (2006) Ribosome biogenesis and cell growth: mTOR coordinates transcription by all three classes of nuclear RNA polymerases. Oncogene 25, 6384-6391
    • (2006) Oncogene , vol.25 , pp. 6384-6391
    • Mayer, C.1    Grummt, I.2
  • 4
    • 13244264948 scopus 로고    scopus 로고
    • RNA-polymerase-I-directed rDNA transcription, life and works
    • Russell, J., and Zomerdijk, J. C. (2005) RNA-polymerase-I-directed rDNA transcription, life and works. Trends Biochem. Sci. 30, 87-96
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 87-96
    • Russell, J.1    Zomerdijk, J.C.2
  • 5
    • 3543040614 scopus 로고    scopus 로고
    • Plant snoRNP complex containing snoRNAs, fibrillarin, and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro
    • Sáez-Vasquez, J., Caparros-Ruiz, D., Barneche, F., and Echeverría, M. (2004) Plant snoRNP complex containing snoRNAs, fibrillarin, and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro. Mol. Cell. Biol. 24, 7284-7297
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 7284-7297
    • Sáez-Vasquez, J.1    Caparros-Ruiz, D.2    Barneche, F.3    Echeverría, M.4
  • 6
    • 27744538542 scopus 로고    scopus 로고
    • SLOW WALKER1, essential for gametogenesis in Arabidopsis, encodes a WD40 protein involved in 18 S ribosomal RNA biogenesis
    • Shi, D. Q., Liu, J., Xiang, Y. H., Ye, D., Sundaresan, V., and Yang, W. C. (2005) SLOW WALKER1, essential for gametogenesis in Arabidopsis, encodes a WD40 protein involved in 18 S ribosomal RNA biogenesis. Plant Cell 17, 2340-2354
    • (2005) Plant Cell , vol.17 , pp. 2340-2354
    • Shi, D.Q.1    Liu, J.2    Xiang, Y.H.3    Ye, D.4    Sundaresan, V.5    Yang, W.C.6
  • 7
    • 0033229970 scopus 로고    scopus 로고
    • The economics of ribosome biosynthesis in yeast
    • Warner, J. R. (1999) The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci. 24, 437-440
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 437-440
    • Warner, J.R.1
  • 8
    • 0037205270 scopus 로고    scopus 로고
    • At the center of eukaryotic life
    • Moss, T., and Stefanovsky, V. Y. (2002) At the center of eukaryotic life. Cell 109, 545-548
    • (2002) Cell , vol.109 , pp. 545-548
    • Moss, T.1    Stefanovsky, V.Y.2
  • 9
    • 33748298941 scopus 로고    scopus 로고
    • Nutrient regulates Tor1 nuclear localization and association with rDNA promoter
    • Li, H., Tsang, C. K., Watkins, M., Bertram, P. G., and Zheng, X. F. (2006) Nutrient regulates Tor1 nuclear localization and association with rDNA promoter. Nature 442, 1058-1061
    • (2006) Nature , vol.442 , pp. 1058-1061
    • Li, H.1    Tsang, C.K.2    Watkins, M.3    Bertram, P.G.4    Zheng, X.F.5
  • 10
    • 77953512889 scopus 로고    scopus 로고
    • MTOR binds to the promoters of RNA polymerase I-and III-transcribed genes
    • Tsang, C. K., Liu, H., and Zheng, X. F. (2010) mTOR binds to the promoters of RNA polymerase I-and III-transcribed genes. Cell Cycle 9, 953-957
    • (2010) Cell Cycle , vol.9 , pp. 953-957
    • Tsang, C.K.1    Liu, H.2    Zheng, X.F.3
  • 11
    • 79952285262 scopus 로고    scopus 로고
    • Target of rapamycin regulates development and ribosomal RNA expression through kinase domain in Arabidopsis
    • Ren, M., Qiu, S., Venglat, P., Xiang, D., Feng, L., Selvaraj, G., and Datla, R. (2011) Target of rapamycin regulates development and ribosomal RNA expression through kinase domain in Arabidopsis. Plant Physiol. 155, 1367-1382
    • (2011) Plant Physiol. , vol.155 , pp. 1367-1382
    • Ren, M.1    Qiu, S.2    Venglat, P.3    Xiang, D.4    Feng, L.5    Selvaraj, G.6    Datla, R.7
  • 12
    • 36048959205 scopus 로고    scopus 로고
    • Hmo1 is required for TOR-dependent regulation of ribosomal protein gene transcription
    • Berger, A. B., Decourty, L., Badis, G., Nehrbass, U., Jacquier, A., and Gadal, O. (2007) Hmo1 is required for TOR-dependent regulation of ribosomal protein gene transcription. Mol. Cell. Biol. 27, 8015-8026
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 8015-8026
    • Berger, A.B.1    Decourty, L.2    Badis, G.3    Nehrbass, U.4    Jacquier, A.5    Gadal, O.6
  • 13
    • 0345305803 scopus 로고    scopus 로고
    • Chromatin-mediated regulation of nucleolar structure and RNA pol i localization by TOR
    • Tsang, C. K., Bertram, P. G., Ai, W., Drenan, R., and Zheng, X. F. (2003) Chromatin-mediated regulation of nucleolar structure and RNA pol I localization by TOR. EMBO J. 22, 6045-6056
    • (2003) EMBO J. , vol.22 , pp. 6045-6056
    • Tsang, C.K.1    Bertram, P.G.2    Ai, W.3    Drenan, R.4    Zheng, X.F.5
  • 14
    • 79952355184 scopus 로고    scopus 로고
    • Rapamycin increases rDNA stability by enhancing association of Sir2 with rDNA in Saccharomyces cerevisiae
    • Ha, C. W., and Huh, W. K. (2011) Rapamycin increases rDNA stability by enhancing association of Sir2 with rDNA in Saccharomyces cerevisiae. Nucleic Acids Res. 39, 1336-1350
    • (2011) Nucleic Acids Res. , vol.39 , pp. 1336-1350
    • Ha, C.W.1    Huh, W.K.2
  • 16
    • 4043171462 scopus 로고    scopus 로고
    • Upstream and downstream of mTOR
    • Hay, N., and Sonenberg, N. (2004) Upstream and downstream of mTOR. Genes Dev. 18, 1926-1945
    • (2004) Genes Dev. , vol.18 , pp. 1926-1945
    • Hay, N.1    Sonenberg, N.2
  • 17
    • 33646901357 scopus 로고    scopus 로고
    • Arabidopsis TARGET of RAPAMYCIN interacts with RAPTOR, which regulates the activity of S6 kinase in response to osmotic stress signals
    • Mahfouz, M. M., Kim, S., Delauney, A. J., and Verma, D. P. (2006) Arabidopsis TARGET OF RAPAMYCIN interacts with RAPTOR, which regulates the activity of S6 kinase in response to osmotic stress signals. Plant Cell 18, 477-490
    • (2006) Plant Cell , vol.18 , pp. 477-490
    • Mahfouz, M.M.1    Kim, S.2    Delauney, A.J.3    Verma, D.P.4
  • 18
    • 1942501814 scopus 로고    scopus 로고
    • Phytohormones participate in an S6 kinase signal transduction pathway in Arabidopsis
    • Turck, F., Zilbermann, F., Kozma, S. C., Thomas, G., and Nagy, F. (2004) Phytohormones participate in an S6 kinase signal transduction pathway in Arabidopsis. Plant Physiol. 134, 1527-1535
    • (2004) Plant Physiol. , vol.134 , pp. 1527-1535
    • Turck, F.1    Zilbermann, F.2    Kozma, S.C.3    Thomas, G.4    Nagy, F.5
  • 19
    • 24944464482 scopus 로고    scopus 로고
    • Ribosomal nucleolar accumulation of ribosomal protein S6 phosphorylation is a determinant of cell size and glucose homeostasis
    • Ruvinsky, I., Sharon, N., Lerer, T., Cohen, H., Stolovich-Rain, M., Nir, T., Dor, Y., Zisman, P., and Meyuhas, O. (2005) Ribosomal nucleolar accumulation of ribosomal protein S6 phosphorylation is a determinant of cell size and glucose homeostasis. Genes Dev. 19, 2199-2211
    • (2005) Genes Dev. , vol.19 , pp. 2199-2211
    • Ruvinsky, I.1    Sharon, N.2    Lerer, T.3    Cohen, H.4    Stolovich-Rain, M.5    Nir, T.6    Dor, Y.7    Zisman, P.8    Meyuhas, O.9
  • 21
    • 79953189355 scopus 로고    scopus 로고
    • Ribosomal protein S6 is highly expressed in non-Hodgkin lymphoma and associates with mRNA containing a 5' terminal oligopyrimidine tract
    • Hagner, P. R., Mazan-Mamczarz, K., Dai, B., Balzer, E. M., Corl, S., Martin, S. S., Zhao, X. F., and Gartenhaus, R. B. (2011) Ribosomal protein S6 is highly expressed in non-Hodgkin lymphoma and associates with mRNA containing a 5' terminal oligopyrimidine tract. Oncogene 30, 1531-1541
    • (2011) Oncogene , vol.30 , pp. 1531-1541
    • Hagner, P.R.1    Mazan-Mamczarz, K.2    Dai, B.3    Balzer, E.M.4    Corl, S.5    Martin, S.S.6    Zhao, X.F.7    Gartenhaus, R.B.8
  • 22
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough, S. J., and Bent, A. F. (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743
    • (1998) Plant J. , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 23
    • 0036241055 scopus 로고    scopus 로고
    • Visualization of interactions among bZIP and Rel family proteins using bimolecular fluorescence complementation
    • Hu, C. D., Chinenov, Y., and Kerppola, T. K. (2002) Visualization of interactions among bZIP and Rel family proteins using bimolecular fluorescence complementation. Mol. Cell 9, 789-798
    • (2002) Mol. Cell , vol.9 , pp. 789-798
    • Hu, C.D.1    Chinenov, Y.2    Kerppola, T.K.3
  • 24
    • 34447099171 scopus 로고    scopus 로고
    • Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis
    • Yoo, S. D., Cho, Y. H., and Sheen, J. (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2, 1565-1572
    • (2007) Nat. Protoc. , vol.2 , pp. 1565-1572
    • Yoo, S.D.1    Cho, Y.H.2    Sheen, J.3
  • 25
    • 1542285163 scopus 로고    scopus 로고
    • A concerted DNA methylation/ histone methylation switch regulates rRNA gene dosage control and nucleolar dominance
    • Lawrence, R. J., Earley, K., Pontes, O., Silva, M., Chen, Z. J., Neves, N., Viegas, W., and Pikaard, C. S. (2004) A concerted DNA methylation/ histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Mol. Cell 13, 599-609
    • (2004) Mol. Cell , vol.13 , pp. 599-609
    • Lawrence, R.J.1    Earley, K.2    Pontes, O.3    Silva, M.4    Chen, Z.J.5    Neves, N.6    Viegas, W.7    Pikaard, C.S.8
  • 26
    • 0000858588 scopus 로고
    • Soybean nodule-specific uricase (Nodulin-35) is expressed and assembled into a functional tetrameric holoenzyme in Escherichia coli
    • Suzuki, H., and Verma, D. P. (1991) Soybean nodule-specific uricase (Nodulin-35) is expressed and assembled into a functional tetrameric holoenzyme in Escherichia coli. Plant Physiol. 95, 384-389
    • (1991) Plant Physiol. , vol.95 , pp. 384-389
    • Suzuki, H.1    Verma, D.P.2
  • 27
    • 0038710729 scopus 로고    scopus 로고
    • Repression of gene expression by Arabidopsis HD2 histone deacetylases
    • Wu, K., Tian, L., Zhou, C., Brown, D., and Miki, B. (2003) Repression of gene expression by Arabidopsis HD2 histone deacetylases. Plant J. 34, 241-247
    • (2003) Plant J. , vol.34 , pp. 241-247
    • Wu, K.1    Tian, L.2    Zhou, C.3    Brown, D.4    Miki, B.5
  • 29
    • 34250619078 scopus 로고    scopus 로고
    • Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis
    • Ueno, Y., Ishikawa, T., Watanabe, K., Terakura, S., Iwakawa, H., Okada, K., Machida, C., and Machida, Y. (2007) Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis. Plant Cell 19, 445-457
    • (2007) Plant Cell , vol.19 , pp. 445-457
    • Ueno, Y.1    Ishikawa, T.2    Watanabe, K.3    Terakura, S.4    Iwakawa, H.5    Okada, K.6    Machida, C.7    Machida, Y.8
  • 31
    • 0020987439 scopus 로고
    • Expression of an mRNA coding gene under the control of an RNA polymerase i promoter
    • Fleischer, S., and Grummt, I. (1983) Expression of an mRNA coding gene under the control of an RNA polymerase I promoter. EMBO J. 2, 2319-2322
    • (1983) EMBO J. , vol.2 , pp. 2319-2322
    • Fleischer, S.1    Grummt, I.2
  • 32
    • 0029394808 scopus 로고
    • The minimal ribosomalRNAgene promoter of Arabidopsis thaliana includes a critical element at the transcription initiation site
    • Doelling, J. H., and Pikaard, C. S. (1995) The minimal ribosomalRNAgene promoter of Arabidopsis thaliana includes a critical element at the transcription initiation site. Plant J. 8, 683-692
    • (1995) Plant J. , vol.8 , pp. 683-692
    • Doelling, J.H.1    Pikaard, C.S.2
  • 33
    • 77953231817 scopus 로고    scopus 로고
    • The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent
    • Creff, A., Sormani, R., and Desnos, T. (2010) The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent. Plant Mol. Biol. 73, 533-546
    • (2010) Plant Mol. Biol. , vol.73 , pp. 533-546
    • Creff, A.1    Sormani, R.2    Desnos, T.3
  • 34
    • 77954814550 scopus 로고    scopus 로고
    • Nucleolar dominance and ribosomal RNA gene silencing
    • Tucker, S., Vitins, A., and Pikaard, C. S. (2010) Nucleolar dominance and ribosomal RNA gene silencing. Curr. Opin. Cell Biol. 22, 351-356
    • (2010) Curr. Opin. Cell Biol. , vol.22 , pp. 351-356
    • Tucker, S.1    Vitins, A.2    Pikaard, C.S.3
  • 35
    • 0042671307 scopus 로고    scopus 로고
    • Epigenetic silencing of RNA polymerase i transcription
    • Grummt, I., and Pikaard, C. S. (2003) Epigenetic silencing of RNA polymerase I transcription. Nat. Rev. Mol. Cell Biol. 4, 641-649
    • (2003) Nat. Rev. Mol. Cell Biol. , vol.4 , pp. 641-649
    • Grummt, I.1    Pikaard, C.S.2
  • 36
    • 15044362537 scopus 로고    scopus 로고
    • Epigenetic mechanism of rRNA gene silencing: Temporal order of NoRC-mediated histone modification, chromatin remodeling, and DNA methylation
    • Santoro, R., and Grummt, I. (2005) Epigenetic mechanism of rRNA gene silencing: temporal order of NoRC-mediated histone modification, chromatin remodeling, and DNA methylation. Mol. Cell. Biol. 25, 2539-2546
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 2539-2546
    • Santoro, R.1    Grummt, I.2
  • 37
    • 34249790257 scopus 로고    scopus 로고
    • RRNA gene silencing and nucleolar dominance: Insights into a chromosome-scale epigenetic on/off switch
    • Preuss, S., and Pikaard, C. S. (2007) rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch. Biochim. Biophys. Acta 1769, 383-392
    • (2007) Biochim. Biophys. Acta , vol.1769 , pp. 383-392
    • Preuss, S.1    Pikaard, C.S.2
  • 38
    • 0037011167 scopus 로고    scopus 로고
    • A role for nucleosome assembly protein 1 in the nuclear transport of histones H2A and H2B
    • Mosammaparast, N., Ewart, C. S., and Pemberton, L. F. (2002) A role for nucleosome assembly protein 1 in the nuclear transport of histones H2A and H2B. EMBO J. 21, 6527-6538
    • (2002) EMBO J. , vol.21 , pp. 6527-6538
    • Mosammaparast, N.1    Ewart, C.S.2    Pemberton, L.F.3
  • 39
    • 0030771898 scopus 로고    scopus 로고
    • Identification of maize histone deacetylase HD2 as an acidic nucleolar phosphoprotein
    • Lusser, A., Brosch, G., Loidl, A., Haas, H., and Loidl, P. (1997) Identification of maize histone deacetylase HD2 as an acidic nucleolar phosphoprotein. Science 277, 88-91
    • (1997) Science , vol.277 , pp. 88-91
    • Lusser, A.1    Brosch, G.2    Loidl, A.3    Haas, H.4    Loidl, P.5
  • 40
    • 84859445077 scopus 로고    scopus 로고
    • TORC2 signaling is antagonized by protein phosphatase 2A and the Far complex in Saccharomyces cerevisiae
    • Pracheil, T., Thornton, J., and Liu, Z. (2012) TORC2 signaling is antagonized by protein phosphatase 2A and the Far complex in Saccharomyces cerevisiae. Genetics 190, 1325-1339
    • (2012) Genetics , vol.190 , pp. 1325-1339
    • Pracheil, T.1    Thornton, J.2    Liu, Z.3
  • 41
    • 0001798492 scopus 로고    scopus 로고
    • Hershey, J. W., Mathews, M. B., Sonenberg, N., eds, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Fumagalli, S., and Thomas, G. (2000) Translational Control of Gene Expression (Hershey, J. W., Mathews, M. B., Sonenberg, N., eds) pp. 695-717, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • (2000) Translational Control of Gene Expression , pp. 695-717
    • Fumagalli, S.1    Thomas, G.2
  • 42
    • 0042510617 scopus 로고    scopus 로고
    • Regulated phosphorylation of 40 S ribosomal protein S6 in root tips of maize
    • Williams A. J., Werner-Fraczek, J., Chang, I.-F., and Bailey-Serres, J. (2003) Regulated phosphorylation of 40 S ribosomal protein S6 in root tips of maize. Plant Physiol. 132, 2086-2097
    • (2003) Plant Physiol. , vol.132 , pp. 2086-2097
    • Williams, A.J.1    Werner-Fraczek, J.2    Chang, I.-F.3    Bailey-Serres, J.4
  • 43
    • 84861418314 scopus 로고    scopus 로고
    • Specialized ribosomes: A new frontier in gene regulation and organismal biology
    • Xue, S., and Barna, M. (2012) Specialized ribosomes: a new frontier in gene regulation and organismal biology. Nat. Rev. Mol. Cell Biol. 13, 355-369
    • (2012) Nat. Rev. Mol. Cell Biol. , vol.13 , pp. 355-369
    • Xue, S.1    Barna, M.2
  • 44
    • 63649157049 scopus 로고    scopus 로고
    • How common are extraribosomal functions of ribosomal proteins?
    • Warner, J. R., and McIntosh, K. B. (2009) How common are extraribosomal functions of ribosomal proteins? Mol. Cell 34, 3-11
    • (2009) Mol. Cell , vol.34 , pp. 3-11
    • Warner, J.R.1    McIntosh, K.B.2
  • 45
    • 0025215702 scopus 로고
    • Hormonally inducible phosphorylation of a nuclear pool of ribosomal protein S6
    • Franco, R., and Rosenfeld, M. G. (1990) Hormonally inducible phosphorylation of a nuclear pool of ribosomal protein S6. J. Biol. Chem. 265, 4321-4325
    • (1990) J. Biol. Chem. , vol.265 , pp. 4321-4325
    • Franco, R.1    Rosenfeld, M.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.