Expression and function of HD2-type histone deacetylases in Arabidopsis development

Plant Journal

Volumn 38, Issue 5, 2004, Pages 715-724

  Zhou, Changhe ^a   Labbe, Helene ^b   Sridha, Sunandini ^a   Wang, Li ^b   Tian, Lining ^c   Latoszek Green, Marysia ^c   Yang, Zhen ^a   Brown, Daniel ^c   Miki, Brian ^b   Wu, Keqiang ^a  

^a WEST VIRGINIA UNIVERSITY   (United States)

^b OTTAWA RESEARCH AND DEVELOPMENT CENTRE   (Canada)

^c AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

Arabidopsis; Development; Gene repression; HD2; Histone deacetylase

Indexed keywords

FLUORESCENCE; GENETIC ENGINEERING; MUTAGENESIS; PLANTS (BOTANY); SEED;

PLANT SPECIFIC HISTONES; TRANSCRIPTION;

PROTEINS;

ARABIDOPSIS PROTEIN; HISTONE DEACETYLASE; HISTONE DEACETYLASE 2; HISTONE DEACETYLASE-2; PRIMER DNA; REPRESSOR PROTEIN;

ARABIDOPSIS; ARTICLE; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; DNA PRIMERS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; HISTONE DEACETYLASES; REPRESSOR PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

ARABIDOPSIS; EUKARYOTA;

EID: 2542612271     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2004.02083.x     Document Type: Article

References (44)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Aravind, L. and Koonin, E.V. (1998) Second family of histone deacetylases. Science, 280, 1167a.
3. Bjerling, P., Silverstein, R.A., Thon, G., Caudy, A., Grewal, S. and Ekwall, K. (2002) Functional divergence between histone deacetylases in fission yeast by distinct cellular localization and in vivo specificity. Mol. Cell Biol. 22, 2170-2181.
4. Boutilier, K., Offringa, R., Sharma, V.K. et al. (2002) Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth. Plant Cell, 14, 1737-1749.
5. Brocard, I.M., Lynch, T.J. and Finkelstein, R.R. (2002) Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response. Plant Physiol. 129, 1533-1543.
6. Brown, D.C.W., Tian, L.-N., Buckley, D.J., Lefebvre, M., McGrath, A. and Webb, J. (1994) Development of a simple particle bombardment device for gene delivery into plant cells. Plant Cell Tissue Org. Cult. 37, 47-53.
7. Calikowski, T.T., Meulia, T. and Meier, I. (2003) A proteomic study of the Arabidopsis nuclear matrix. J. Cell Biochem. 90, 361-378.
8. Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
9. Dangl, M., Brosch, G., Haas, H., Loidl, P. and Lusser, A. (2001) Comparative analysis of HD2 type histone deacetylases in higher plants. Planta, 213, 280-285.
10. Dellaporta, S.L., Wood, J. and Hicks, J.B. (1983) A plant DNA minipreparation, version II. Plant Mol. Rep. 1, 19-21.
11. Devoto, A., Nieto-Rostro, M., Xie, D., Ellis, C., Harmston, R., Patrick, E., Davis, J., Sherratt, L., Coleman, M. and Turner, J.G. (2002) COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis. Plant J. 32, 457-466.
12. Eshed, Y., Baum, S.F. and Bowman, J.L. (1999) Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell. 99, 199-209.
13. Fujiwara, T., Nambara, E., Yamagishi, K., Goto, D.B. and Naito, S. (2002) Storage proteins. In The Arabidopsis Book (Somerville, C.R. and Meyerowitz, E.M., eds), Rockville, MD:, American Society of Plant Biologists (doi/10.1199/tab.0009, http://www. aspb.org/publications/arabidopsis/).
14. Gamborg, O.L., Miller, R.A. and Ojima, K. (1968) Nutrient requirement suspension cultures of soybean root cells. Exp. Cell Res. 50, 151-158.
15. Gijzen, M., Miller, S.S., Bowman, L.-A., Batchelor, A.K., Boutilier, K. and Miki, B.L.A. (1999) Localization of peroxidase mRNAs in soybean seeds by in situ hybridization. Plant Mol. Biol. 41, 57-63.
16. Haslekas, C., Viken, M.K., Grini, P.E., Nygaard, V., Nordgard, S.H., Meza, T.J. and Aalen, R.B. (2003) Seed 1-cysteine peroxiredoxin antioxidants are not involved in dormancy, but contribute to inhibition of germination during stress. Plant Physiol. 133, 1148-1157.
17. Hecht, V., Vielle-Calzada, J.-P., Hartog, M.V., Schmidt, E.D.L., Boutilier, K., Grossniklaus, U. and de Vries, S.C. (2001) The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Plant Physiol. 127, 803-816.
18. Hirschler-Laszkiewicz, I., Cavanaugh, A., Hu, Q., Catania, J., Avantaggiati, M.L. and Rothblum, L.I. (2001) The role of acetylation in rDNA transcription. Nucl. Acids Res. 29, 4114-4124.
19. Jefferson, R.A., Kavanagh, T.A. and Bevan, M.W. (1987) GUS fusion: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6, 3901-3907.
20. Kang, J.Y., Choi, H.I., Im, M.Y. and Kim, S.Y. (2002) Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. Plant Cell, 14, 343-357.
21. Kehle, J., Beuchle, E., Treuheit, S., Christen, B., Kennison, J.A., Bienz, M. and Muller, J. (1998) dMi-2, a hunchback-interacting protein that functions in Polycomb repression. Science, 282, 1897-1900.
22. Khochbin, S., Verdel, A., Lemercier, C. and Seigneurin-Berny, S. (2001) Functional significance of histone deacetylase diversity. Curr. Opin. Genet. Dev. 419, 157-160.
23. Lusser, A., Brosch, G., Loidl, A., Haas, H. and Loidl, P. (1997) Identification of maize histone deacetylase HD2 as an acidic nucleolar phosphoprotein. Science, 277, 88-91.
24. Mayer, K.F., Schoof, H., Haecker, A., Lenhard, M., Jurgens, G. and Laux, T. (1998) Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell, 95, 805-815.
25. Mordhorst, A.P., Hartog, M.V., El Tamer, M.K., Laux, T. and de Vries, S.C. (2002) Somatic embryogenesis from Arabidopsis shoot apical meristem mutants. Planta, 214, 829-836.
26. Murashige, T. and Skoog, F. (1962) A revised medium for rapid growth and bioassay with tobacco tissue cultures. Physiol. Plant. 15, 473-497.
27. Murfett, J., Wang, X., Hagen, G. and Guilfoyle, T.J. (2001) Identification of Arabidopsis histone deacetylase HDA6 mutants that affect transgene expression. Plant Cell, 13, 1047-1061.
28. Ogas, J., Kaufmann, S., Henderson, L. and Somerville, C. (1999) PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis. Proc. Natl. Acad. Sci. USA, 96, 13839-13844.
29. Pandey, R., Muller, A., Napoli, C.A., Selinger, D.A., Pikaard, C.S., Richards, E.J., Bender, J., Mount, D.W. and Jorgensen, R.A. (2002) Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucl. Acids Res. 30, 5036-5055.
30. Pederson, T. (1998) The plurifunctional nucleolus. Nucl. Acids Res. 26, 3871-3876.
31. Pipal, A., Goralik-Schramel, M., Lusser, A., Lanzanova, C., Sarg, B., Loidl, A., Lindner, H., Rossi, V. and Loidl, P. (2003) Regulation and processing of maize histone deacetylase Hda1 by limited proteolysis. Plant Cell, 15, 1904-1917.
32. Rossi, V., Locatelli, S., Lanzanova, C. et al. (2003) A maize histone deacetylase and retinoblastoma-related protein physically interact and cooperate in repressing gene transcription. Plant Mol. Biol. 51, 401-413.
33. Sambrook, J. and Russell, D.W. (2001) Molecular Cloning: a Laboratory Manual, edn. 3. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
34. Scherl, A., Coute, Y., Deon, C., Calle, A., Kindbeiter, K., Sanchez, J.C., Greco, A., Hochstrasser, D. and Diaz, J.J. (2003) Functional proteomic analysis of human nucleolus. Mol. Biol. Cell. 13, 4100-4109.
35. Shaw, C.H. (1995) Introduction of cloning plasmids into Agrobacterium tumefaciens. Meth. Mol. Biol. 49, 33-37.
36. Strommer, J., Gregerson, R. and Vayda, M. (1993) Isolation and characterization of plant mRNA. In Methods in Plant Molecular Biology and Biotechnology (Glik, B.R. and Thompson, J.E., eds). Boca Raton: CRC Press, pp. 49-66.
37. Tian, L. and Chen, Z.J. (2001) Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. Proc. Natl. Acad. Sci. USA, 98, 200-205.
38. Van Larebeke, N., Engler, G., Holsters, M., Van den Elscker, S., Zainen, I., Schilperoort, R.A. and Schell, J. (1974) Large plasmid in Agrobacterium tumefaciens essential for crown gall-inducing ability. Nature, 252, 169-170.
39. Weigel, D. and Glazebrook, J. (2002) Arabidopsis: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
40. Wu, K., Tian, L., Malik, K., Brown, D. and Miki, B. (2000a) Functional analysis of HD2 histone deacetylase homologues in Arabidopsis thaliana. Plant J. 22, 19-27.
41. Wu, K., Malik, K., Tian, L., Brown, D. and Miki, B. (2000b) Functional analysis of a RPD3 histone deacetylase homolog in Arabidopsis thaliana. Plant Mol. Biol. 44, 167-176.
42. Wu, K., Tian, L., Brown, D. and Miki, B. (2003) Repression of gene expression by Arabidopsis HD2 histone deacetylases. Plant J. 34, 241-247.
43. Yang, X. and Seto, E. (2003) Collaborative spirit of histone deacetylases in regulating chromatin structure and gene expression. Curr. Opin. Genet. Devel. 13, 143-153.
44. Zuo, J., Niu, Q.-Wm, Frugis, G. and Chua, N.-H. (2002) The WUSCHEL gene promotes vegetative-to-embryonic transition in Arabidopsis. Plant J. 30, 349-359.