-
1
-
-
20544444045
-
Microbiology: Diversity of the human intestinal microbial flora
-
DOI 10.1126/science.1110591
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, et al. (2005) Diversity of the human intestinal microbial flora. Science 308: 1635-1638. (Pubitemid 40807514)
-
(2005)
Science
, vol.308
, Issue.5728
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
2
-
-
37749031255
-
Next-generation sequencing transforms today's biology
-
Schuster SC (2008) Next-generation sequencing transforms today's biology. Nat Methods 5: 16-18.
-
(2008)
Nat Methods
, vol.5
, pp. 16-18
-
-
Schuster, S.C.1
-
3
-
-
34249723655
-
Advanced sequencing technologies and their wider impact in microbiology
-
Hall N (2007) Advanced sequencing technologies and their wider impact in microbiology. J Exp Biol 210: 1518-1525.
-
(2007)
J Exp Biol
, vol.210
, pp. 1518-1525
-
-
Hall, N.1
-
4
-
-
77952158672
-
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
-
Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, et al. (2010) Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A 107: 7503-7508.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 7503-7508
-
-
Turnbaugh, P.J.1
Quince, C.2
Faith, J.J.3
McHardy, A.C.4
Yatsunenko, T.5
-
5
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, et al. (2011) Enterotypes of the human gut microbiome. Nature 473: 174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
-
6
-
-
34547683600
-
Diversity of the human gastrointestinal tract microbiota revisited
-
DOI 10.1111/j.1462-2920.2007.01369.x
-
Rajilic-Stojanovic M, Smidt H, de Vos WM (2007) Diversity of the human gastrointestinal tract microbiota revisited. Environ Microbiol 9: 2125-2136. (Pubitemid 47222128)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.9
, pp. 2125-2136
-
-
Rajilic-Stojanovic, M.1
Smidt, H.2
De Vos, W.M.3
-
7
-
-
31144459030
-
RNA viral community in human feces: Prevalence of plant pathogenic viruses
-
Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, et al. (2006) RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol 4: e3.
-
(2006)
PLoS Biol
, vol.4
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.H.3
Run, J.Q.4
Wei, C.L.5
-
8
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
DOI 10.1128/JB.185.20.6220-6223.2003
-
Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, et al. (2003) Metagenomic analyses of an uncultured viral community from human feces. Journal of bacteriology 185: 6220-6223. (Pubitemid 37248478)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.20
, pp. 6220-6223
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
Rohwer, F.7
-
9
-
-
23344442120
-
Obesity alters gut microbial ecology
-
DOI 10.1073/pnas.0504978102
-
Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, et al. (2005) Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A 102: 11070-11075. (Pubitemid 41105994)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.31
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
10
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
DOI 10.1038/nature05414, PII NATURE05414
-
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031. (Pubitemid 46018515)
-
(2006)
Nature
, vol.444
, Issue.7122
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
11
-
-
77956310020
-
Effects of gut microbiota on obesity and atherosclerosis via modulation of inflammation and lipid metabolism
-
Caesar R, Fak F, Backhed F (2010) Effects of gut microbiota on obesity and atherosclerosis via modulation of inflammation and lipid metabolism. J Intern Med 268: 320-328.
-
(2010)
J Intern Med
, vol.268
, pp. 320-328
-
-
Caesar, R.1
Fak, F.2
Backhed, F.3
-
12
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
DOI 10.1038/4441022a, PII 4441022A
-
Ley RE, Turnbaugh PJ, Klein S, Gordon JI (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444: 1022-1023. (Pubitemid 46018512)
-
(2006)
Nature
, vol.444
, Issue.7122
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
13
-
-
67849119163
-
The microbiome and obesity: Is obesity linked to our gut flora?
-
Tsai F, Coyle WJ (2009) The microbiome and obesity: is obesity linked to our gut flora? Curr Gastroenterol Rep 11: 307-313.
-
(2009)
Curr Gastroenterol Rep
, vol.11
, pp. 307-313
-
-
Tsai, F.1
Coyle, W.J.2
-
14
-
-
78649908827
-
The role of the gut microbiota in nonalcoholic fatty liver disease
-
Abu-Shanab A, Quigley EM (2010) The role of the gut microbiota in nonalcoholic fatty liver disease. Nat Rev Gastroenterol Hepatol 7: 691-701.
-
(2010)
Nat Rev Gastroenterol Hepatol
, vol.7
, pp. 691-701
-
-
Abu-Shanab, A.1
Quigley, E.M.2
-
15
-
-
77949393654
-
Gut microbiota in human adults with type 2 diabetes differs from nondiabetic adults
-
Larsen N, Vogensen FK, van den Berg FW, Nielsen DS, Andreasen AS, et al. (2010) Gut microbiota in human adults with type 2 diabetes differs from nondiabetic adults. PLoS One 5: e9085.
-
(2010)
PLoS One
, vol.5
-
-
Larsen, N.1
Vogensen, F.K.2
Van Den Berg, F.W.3
Nielsen, D.S.4
Andreasen, A.S.5
-
16
-
-
70350310104
-
Products of the colonic microbiota mediate the effects of diet on colon cancer risk
-
O'Keefe SJ, Ou J, Aufreiter S, O'Connor D, Sharma S, et al. (2009) Products of the colonic microbiota mediate the effects of diet on colon cancer risk. J Nutr 139: 2044-2048.
-
(2009)
J Nutr
, vol.139
, pp. 2044-2048
-
-
O'Keefe, S.J.1
Ou, J.2
Aufreiter, S.3
O'Connor, D.4
Sharma, S.5
-
19
-
-
78649270064
-
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
-
Tasse L, Bercovici J, Pizzut-Serin S, Robe P, Tap J, et al. (2010) Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. Genome Res 20: 1605-1612.
-
(2010)
Genome Res
, vol.20
, pp. 1605-1612
-
-
Tasse, L.1
Bercovici, J.2
Pizzut-Serin, S.3
Robe, P.4
Tap, J.5
-
20
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, et al. (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: D233-238.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
-
21
-
-
84862200127
-
Complex carbohydrate utilization by the healthy human microbiome
-
Cantarel BL, Lombard V, Henrissat B (2012) Complex carbohydrate utilization by the healthy human microbiome. PLoS One 7: e28742.
-
(2012)
PLoS One
, vol.7
-
-
Cantarel, B.L.1
Lombard, V.2
Henrissat, B.3
-
22
-
-
0034076597
-
Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods
-
DOI 10.1097/00005176-200001000-00019
-
Harmsen HJ, Wildeboer-Veloo AC, Raangs GC, Wagendorp AA, Klijn N, et al. (2000) Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. J Pediatr Gastroenterol Nutr 30: 61-67. (Pubitemid 30349947)
-
(2000)
Journal of Pediatric Gastroenterology and Nutrition
, vol.30
, Issue.1
, pp. 61-67
-
-
Harmsen, H.J.M.1
Wildeboer-Veloo, A.C.M.2
Raangs, G.C.3
Wagendorp, A.A.4
Klijn, N.5
Bindels, J.G.6
Welling, G.W.7
-
23
-
-
79955783588
-
Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres
-
Fallani M, Amarri S, Uusijarvi A, Adam R, Khanna S, et al. (2011) Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres. Microbiology 157: 1385-1392.
-
(2011)
Microbiology
, vol.157
, pp. 1385-1392
-
-
Fallani, M.1
Amarri, S.2
Uusijarvi, A.3
Adam, R.4
Khanna, S.5
-
24
-
-
84879411201
-
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota
-
El Kaoutari A, Armougom F, Gordon JI, Raoult D, Henrissat B (2013) The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. Nature reviews Microbiology 11: 497-504.
-
(2013)
Nature Reviews Microbiology
, vol.11
, pp. 497-504
-
-
El Kaoutari, A.1
Armougom, F.2
Gordon, J.I.3
Raoult, D.4
Henrissat, B.5
-
25
-
-
84855173898
-
Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts
-
Martens EC, Lowe EC, Chiang H, Pudlo NA, Wu M, et al. (2011) Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol 9: e1001221.
-
(2011)
PLoS Biol
, vol.9
-
-
Martens, E.C.1
Lowe, E.C.2
Chiang, H.3
Pudlo, N.A.4
Wu, M.5
-
26
-
-
0021349077
-
The contribution of the large intestine to energy supplies in man
-
McNeil NI (1984) The contribution of the large intestine to energy supplies in man. Am J Clin Nutr 39: 338-342.
-
(1984)
Am J Clin Nutr
, vol.39
, pp. 338-342
-
-
McNeil, N.I.1
-
27
-
-
0038326912
-
On defining dietary fibre
-
DeVries JW (2003) On defining dietary fibre. Proc Nutr Soc 62: 37-43.
-
(2003)
Proc Nutr Soc
, vol.62
, pp. 37-43
-
-
DeVries, J.W.1
-
28
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457: 480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
-
29
-
-
51349161191
-
High-resolution metagenomics targets specific functional types in complex microbial communities
-
Kalyuzhnaya MG, Lapidus A, Ivanova N, Copeland AC, McHardy AC, et al. (2008) High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol 26: 1029-1034.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1029-1034
-
-
Kalyuzhnaya, M.G.1
Lapidus, A.2
Ivanova, N.3
Copeland, A.C.4
McHardy, A.C.5
-
30
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, et al. (2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331: 463-467.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.W.4
Chokhawala, H.5
-
31
-
-
80054750830
-
Cellulosomics, a gene-centric approach to investigating the intraspecific diversity and adaptation of Ruminococcus flavefaciens within the rumen
-
Brulc JM, Yeoman CJ, Wilson MK, Berg Miller ME, Jeraldo P, et al. (2011) Cellulosomics, a gene-centric approach to investigating the intraspecific diversity and adaptation of Ruminococcus flavefaciens within the rumen. PLoS One 6: e25329.
-
(2011)
PLoS One
, vol.6
-
-
Brulc, J.M.1
Yeoman, C.J.2
Wilson, M.K.3
Berg Miller, M.E.4
Jeraldo, P.5
-
32
-
-
78751584993
-
Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formation
-
Pope PB, Totsika M, Aguirre de Carcer D, Schembri MA, Morrison M (2011) Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell aggregation and biofilm formation. ISME J 5: 341-350.
-
(2011)
ISME J
, vol.5
, pp. 341-350
-
-
Pope, P.B.1
Totsika, M.2
Aguirre De Carcer, D.3
Schembri, M.A.4
Morrison, M.5
-
33
-
-
84862001111
-
Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci
-
Pope PB, Mackenzie AK, Gregor I, Smith W, Sundset MA, et al. (2012) Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci. PLoS One 7: e38571.
-
(2012)
PLoS One
, vol.7
-
-
Pope, P.B.1
Mackenzie, A.K.2
Gregor, I.3
Smith, W.4
Sundset, M.A.5
-
34
-
-
79956301905
-
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
-
Muegge BD, Kuczynski J, Knights D, Clemente JC, Gonzalez A, et al. (2011) Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332: 970-974.
-
(2011)
Science
, vol.332
, pp. 970-974
-
-
Muegge, B.D.1
Kuczynski, J.2
Knights, D.3
Clemente, J.C.4
Gonzalez, A.5
-
35
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
DOI 10.1038/nature06269
-
Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, et al. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450: 560-565. (Pubitemid 350190243)
-
(2007)
Nature
, vol.450
, Issue.7169
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
Cayouette, M.7
McHardy, A.C.8
Djordjevic, G.9
Aboushadi, N.10
Sorek, R.11
Tringe, S.G.12
Podar, M.13
Martin, H.G.14
Kunin, V.15
Dalevi, D.16
Madejska, J.17
Kirton, E.18
Platt, D.19
Szeto, E.20
Salamov, A.21
Barry, K.22
Mikhailova, N.23
Kyrpides, N.C.24
Matson, E.G.25
Ottesen, E.A.26
Zhang, X.27
Hernandez, M.28
Murillo, C.29
Acosta, L.G.30
Rigoutsos, I.31
Tamayo, G.32
Green, B.D.33
Chang, C.34
Rubin, E.M.35
Mathur, E.J.36
Robertson, D.E.37
Hugenholtz, P.38
Leadbetter, J.R.39
more..
-
36
-
-
78049420498
-
An insect herbivore microbiome with high plant biomass-degrading capacity
-
Suen G, Scott JJ, Aylward FO, Adams SM, Tringe SG, et al. (2010) An insect herbivore microbiome with high plant biomass-degrading capacity. PLoS Genet 6.
-
(2010)
PLoS Genet
, vol.6
-
-
Suen, G.1
Scott, J.J.2
Aylward, F.O.3
Adams, S.M.4
Tringe, S.G.5
-
37
-
-
84887849444
-
Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli
-
Lond
-
Million M, Angelakis E, Maraninchi M, Henry M, Giorgi R, et al. (2013) Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli. Int J Obes (Lond).
-
(2013)
Int J Obes
-
-
Million, M.1
Angelakis, E.2
Maraninchi, M.3
Henry, M.4
Giorgi, R.5
-
38
-
-
33847190449
-
Isolation of DNA from bacterial samples of the human gastrointestinal tract
-
Zoetendal EG, Heilig HG, Klaassens ES, Booijink CC, Kleerebezem M, et al. (2006) Isolation of DNA from bacterial samples of the human gastrointestinal tract. Nat Protoc 1: 870-873.
-
(2006)
Nat Protoc
, vol.1
, pp. 870-873
-
-
Zoetendal, E.G.1
Heilig, H.G.2
Klaassens, E.S.3
Booijink, C.C.4
Kleerebezem, M.5
-
39
-
-
61649122339
-
Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata)
-
Ferraresso S, Vitulo N, Mininni AN, Romualdi C, Cardazzo B, et al. (2008) Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata). BMC Genomics 9: 580.
-
(2008)
BMC Genomics
, vol.9
, pp. 580
-
-
Ferraresso, S.1
Vitulo, N.2
Mininni, A.N.3
Romualdi, C.4
Cardazzo, B.5
-
41
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
(2012) Structure, function and diversity of the healthy human microbiome. Nature 486: 207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
42
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
-
43
-
-
77953219138
-
The biochemistry and structural biology of plant cell wall deconstruction
-
Gilbert HJ (2010) The biochemistry and structural biology of plant cell wall deconstruction. Plant Physiol 153: 444-455.
-
(2010)
Plant Physiol
, vol.153
, pp. 444-455
-
-
Gilbert, H.J.1
|