-
1
-
-
0002094193
-
Bacteria, fungi and protozoa of the rumen
-
In: Mackie RI, White BA, Isaacson R, editors, New York, Chapman and Hall, Vol 2
-
Hespell RB, Akin DE, Dehority BA, (1997) Bacteria, fungi and protozoa of the rumen. In: Mackie RI, White BA, Isaacson R, editors. Gastrointestinal Microbiology New York Chapman and Hall pp. 59-186 Vol 2.
-
(1997)
Gastrointestinal Microbiology
, pp. 59-186
-
-
Hespell, R.B.1
Akin, D.E.2
Dehority, B.A.3
-
2
-
-
33747340215
-
Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen - Biochemical properties, structural analysis, and phylogenetic relationships
-
Beloqui A, Pita M, Polaina J, Martinez-Arias A, Golyshina OV, et al. (2006) Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen- Biochemical properties, structural analysis, and phylogenetic relationships. J Biol Chem 281: 22933-22942.
-
(2006)
J Biol Chem
, vol.281
, pp. 22933-22942
-
-
Beloqui, A.1
Pita, M.2
Polaina, J.3
Martinez-Arias, A.4
Golyshina, O.V.5
-
3
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, et al. (2009) Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci USA 106: 1948-1953.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Miller, M.E.3
Wilson, M.K.4
Yannarell, A.C.5
-
4
-
-
33644842119
-
Improved serial analysis of V1 ribosomal sequence tags (SARST-V1) provides a rapid, comprehensive, sequence-based characterization of bacterial diversity and community composition
-
Yu Z, Yu M, Morrison M, (2006) Improved serial analysis of V1 ribosomal sequence tags (SARST-V1) provides a rapid, comprehensive, sequence-based characterization of bacterial diversity and community composition. Environ Microbiol 8: 603-611.
-
(2006)
Environ Microbiol
, vol.8
, pp. 603-611
-
-
Yu, Z.1
Yu, M.2
Morrison, M.3
-
5
-
-
79953748339
-
Towards an evolutionary model of animal-associated microbiomes
-
Yeoman CJ, Chia N, Yilidrim S, Berg Miller ME, Kent A, et al. (2011) Towards an evolutionary model of animal-associated microbiomes. Entropy 13 (3): 570-594.
-
(2011)
Entropy
, vol.13
, Issue.3
, pp. 570-594
-
-
Yeoman, C.J.1
Chia, N.2
Yilidrim, S.3
Berg Miller, M.E.4
Kent, A.5
-
6
-
-
0032617899
-
Effect of diet on populations of three species of ruminal cellulolytic bacteria in lactating dairy cows
-
Weimer PJ, Waghorn GC, Odt CL, Mertens DR, (1999) Effect of diet on populations of three species of ruminal cellulolytic bacteria in lactating dairy cows. J Dairy Sci 82 (1): 122-134.
-
(1999)
J Dairy Sci
, vol.82
, Issue.1
, pp. 122-134
-
-
Weimer, P.J.1
Waghorn, G.C.2
Odt, C.L.3
Mertens, D.R.4
-
7
-
-
77951630910
-
Thermostable enzymes as biocatalysts in the biofuel industry
-
Yeoman CJ, Han Y, Dodd D, Schroeder CM, Mackie RI, et al. (2010) Thermostable enzymes as biocatalysts in the biofuel industry. Adv Appl Microbiol 70: 1-55.
-
(2010)
Adv Appl Microbiol
, vol.70
, pp. 1-55
-
-
Yeoman, C.J.1
Han, Y.2
Dodd, D.3
Schroeder, C.M.4
Mackie, R.I.5
-
8
-
-
0142123359
-
The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane excreting subjects
-
Robert C, Bernalier-Donadille A, (2003) The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane excreting subjects. FEMS Microbiol Ecol 46: 81-89.
-
(2003)
FEMS Microbiol Ecol
, vol.46
, pp. 81-89
-
-
Robert, C.1
Bernalier-Donadille, A.2
-
9
-
-
76949105792
-
Detection of fiber-digesting bacteria in the ceca of ostrich using specific primer sets
-
Matsui H, Ban-Tokuda T, Wakita M, (2010) Detection of fiber-digesting bacteria in the ceca of ostrich using specific primer sets. Curr Microbiol 60 (2): 112-116.
-
(2010)
Curr Microbiol
, vol.60
, Issue.2
, pp. 112-116
-
-
Matsui, H.1
Ban-Tokuda, T.2
Wakita, M.3
-
10
-
-
33751113567
-
Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens
-
Jindou S, Borovok I, Rincon MT, Flint HJ, Antonopoulos DA, et al. (2006) Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens. J Bacteriol 188: 7971-7976.
-
(2006)
J Bacteriol
, vol.188
, pp. 7971-7976
-
-
Jindou, S.1
Borovok, I.2
Rincon, M.T.3
Flint, H.J.4
Antonopoulos, D.A.5
-
11
-
-
47349130717
-
Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens
-
Jindou S, Brulc JM, Levy-Assaraf M, Rincon MT, Flint HJ, et al. (2008) Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens. FEMS Microbiol Lett 285: 188-194.
-
(2008)
FEMS Microbiol Lett
, vol.285
, pp. 188-194
-
-
Jindou, S.1
Brulc, J.M.2
Levy-Assaraf, M.3
Rincon, M.T.4
Flint, H.J.5
-
12
-
-
27744600973
-
Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface
-
Rincon MT, Cepeljnik T, Martin JC, Lamed R, Barak Y, et al. (2005) Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface. J Bacteriol 187: 7569-7578.
-
(2005)
J Bacteriol
, vol.187
, pp. 7569-7578
-
-
Rincon, M.T.1
Cepeljnik, T.2
Martin, J.C.3
Lamed, R.4
Barak, Y.5
-
13
-
-
4143139469
-
The Cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides
-
Bayer EA, Belaich JP, Shoham Y, Lamed R, (2004) The Cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides. Annu Rev Microbiol 58: 521-554.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 521-554
-
-
Bayer, E.A.1
Belaich, J.P.2
Shoham, Y.3
Lamed, R.4
-
14
-
-
27744600973
-
Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface
-
Rincon MT, Čepeljnik T, Martin JC, Lamed R, Barak Y, et al. (2005) Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface. J Bacteriol 187 (22): 7569-7578.
-
(2005)
J Bacteriol
, vol.187
, Issue.22
, pp. 7569-7578
-
-
Rincon, M.T.1
Čepeljnik, T.2
Martin, J.C.3
Lamed, R.4
Barak, Y.5
-
15
-
-
0034080081
-
Three multidomain esterases from the cellulolytic rumen anaerobe Ruminococcus flavefaciens 17 that carry divergent dockerin sequences
-
Aurilia V, Martin JC, McCrae SI, Scott KP, Rincon MT, et al. (2000) Three multidomain esterases from the cellulolytic rumen anaerobe Ruminococcus flavefaciens 17 that carry divergent dockerin sequences. Microbiology 146 (Pt 6): 1391-1397.
-
(2000)
Microbiology
, vol.146
, Issue.Pt 6
, pp. 1391-1397
-
-
Aurilia, V.1
Martin, J.C.2
McCrae, S.I.3
Scott, K.P.4
Rincon, M.T.5
-
16
-
-
85010253051
-
Extent of cellulose and hemicellulose digestion in various forages by pure cultures of cellulolytic rumen bacteria
-
Dehority BA, Scott HW, (1967) Extent of cellulose and hemicellulose digestion in various forages by pure cultures of cellulolytic rumen bacteria. J Dairy Sci 50: 1136-1141.
-
(1967)
J Dairy Sci
, vol.50
, pp. 1136-1141
-
-
Dehority, B.A.1
Scott, H.W.2
-
17
-
-
0033064371
-
Diversity of Ruminococcus strains: a survey of genetic polymorphisms and plant digestibility
-
Krause DO, Bunch RJ, Smith WJ, McSweeney CS, (1999) Diversity of Ruminococcus strains: a survey of genetic polymorphisms and plant digestibility. J Appl Microbiol 86: 487-495.
-
(1999)
J Appl Microbiol
, vol.86
, pp. 487-495
-
-
Krause, D.O.1
Bunch, R.J.2
Smith, W.J.3
McSweeney, C.S.4
-
18
-
-
1942539976
-
ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome
-
Rincon MT, Martin JC, Aurilia V, McCrae SI, Rucklidge G, et al. (2004) ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome. J Bacteriol 186: 2576-2585.
-
(2004)
J Bacteriol
, vol.186
, pp. 2576-2585
-
-
Rincon, M.T.1
Martin, J.C.2
Aurilia, V.3
McCrae, S.I.4
Rucklidge, G.5
-
19
-
-
0242657463
-
Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities
-
Kent AD, Smith DJ, Benson BJ, Triplett EW, (2003) Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl Environ Microbiol 69: 6768-6776.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6768-6776
-
-
Kent, A.D.1
Smith, D.J.2
Benson, B.J.3
Triplett, E.W.4
-
20
-
-
33644606606
-
FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries
-
Yu Y, Breitbart M, McNairnie P, Rohwer F, (2006) FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinformatics 7: 57.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 57
-
-
Yu, Y.1
Breitbart, M.2
McNairnie, P.3
Rohwer, F.4
-
21
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 21: 456-463.
-
(2006)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
-
22
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD, Handelsman J, (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology 71: 1501-1506.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
23
-
-
0028869891
-
Conservation of the genes for dissimilatory sulfite reductase from Desulfovibrio vulgaris and Archaeoglobus fulgidus allows their detection by PCR
-
Karkhoff-Schweizer RR, Huber DPW, Voordouw G, (1995) Conservation of the genes for dissimilatory sulfite reductase from Desulfovibrio vulgaris and Archaeoglobus fulgidus allows their detection by PCR. Appl Environ Microbiol 61: 290-296.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 290-296
-
-
Karkhoff-Schweizer, R.R.1
Huber, D.P.W.2
Voordouw, G.3
-
24
-
-
44649101925
-
Evaluation of the sulfate-reducing bacterial population associated with stored swine slurry
-
Cook KL, Whitehead TR, Spence C, Cotta MA, (2008) Evaluation of the sulfate-reducing bacterial population associated with stored swine slurry. Anaerobe 14: 172-180.
-
(2008)
Anaerobe
, vol.14
, pp. 172-180
-
-
Cook, K.L.1
Whitehead, T.R.2
Spence, C.3
Cotta, M.A.4
-
25
-
-
27644532467
-
Methyl-coenzyme M reductase genes: Unique functional markers for methanogenic and anaerobic methane-oxidizing Archaea
-
Friedrich MW, (2005) Methyl-coenzyme M reductase genes: Unique functional markers for methanogenic and anaerobic methane-oxidizing Archaea. Meth Enzymol 397: 428-442.
-
(2005)
Meth Enzymol
, vol.397
, pp. 428-442
-
-
Friedrich, M.W.1
-
26
-
-
0036856362
-
The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill
-
Luton PE, Wayne JM, Sharp RJ, Riley PW, (2002) The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148: 3521-3530.
-
(2002)
Microbiology
, vol.148
, pp. 3521-3530
-
-
Luton, P.E.1
Wayne, J.M.2
Sharp, R.J.3
Riley, P.W.4
-
27
-
-
4444355341
-
Phylogenetic analysis of methyl coenzyme-M reductase detected from the bovine rumen
-
Tatsuoka N, Mohammed N, Mitsumori M, Hara K, Kurihara M, et al. (2004) Phylogenetic analysis of methyl coenzyme-M reductase detected from the bovine rumen. Lett Appl Microbiol 39: 257-260.
-
(2004)
Lett Appl Microbiol
, vol.39
, pp. 257-260
-
-
Tatsuoka, N.1
Mohammed, N.2
Mitsumori, M.3
Hara, K.4
Kurihara, M.5
-
28
-
-
0030726657
-
Crystal structure of methyl-coenzyme M reductase: The key enzyme of biological methane formation
-
Ermler U, Grabarse W, Shima S, Goubeaud M, Thauer RK, (1997) Crystal structure of methyl-coenzyme M reductase: The key enzyme of biological methane formation. Science 278: 1457-1462.
-
(1997)
Science
, vol.278
, pp. 1457-1462
-
-
Ermler, U.1
Grabarse, W.2
Shima, S.3
Goubeaud, M.4
Thauer, R.K.5
-
29
-
-
15944371548
-
Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing
-
Larue R, Yu ZT, Parisi VA, Egan AR, Morrison M, (2005) Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environ Microbiol 7: 530-543.
-
(2005)
Environ Microbiol
, vol.7
, pp. 530-543
-
-
Larue, R.1
Yu, Z.T.2
Parisi, V.A.3
Egan, A.R.4
Morrison, M.5
-
30
-
-
0021016163
-
Characterization of a cellulose-binding, cellulase-containing complex in Clostridium thermocellum
-
Lamed R, Setter E, Bayer EA, (1983) Characterization of a cellulose-binding, cellulase-containing complex in Clostridium thermocellum. J Bacteriol 156: 828-836.
-
(1983)
J Bacteriol
, vol.156
, pp. 828-836
-
-
Lamed, R.1
Setter, E.2
Bayer, E.A.3
-
31
-
-
0020958567
-
The cellulosome - a discrete cell surface organelle of Clostridium thermocellum which exhibits separate antigenic, cellulose-binding and various cellulolytic activities
-
Lamed R, Setter E, Kenig R, Bayer EA, (1983) The cellulosome - a discrete cell surface organelle of Clostridium thermocellum which exhibits separate antigenic, cellulose-binding and various cellulolytic activities. Biotechnol Bioeng Symp 13: 163-181.
-
(1983)
Biotechnol Bioeng Symp
, vol.13
, pp. 163-181
-
-
Lamed, R.1
Setter, E.2
Kenig, R.3
Bayer, E.A.4
-
32
-
-
0347579849
-
Degradation of cellulose substrates by cellulosome chimeras: Substrate targeting versus proximity of enzyme components
-
Fierobe H-P, Bayer EA, Tardif C, Czjzek M, Mechaly A, et al. (2002) Degradation of cellulose substrates by cellulosome chimeras: Substrate targeting versus proximity of enzyme components. J Biol Chem 277: 49621-49630.
-
(2002)
J Biol Chem
, vol.277
, pp. 49621-49630
-
-
Fierobe, H.-P.1
Bayer, E.A.2
Tardif, C.3
Czjzek, M.4
Mechaly, A.5
-
34
-
-
2442510059
-
Improved extraction of PCR-quality community DNA from digesta and fecal samples
-
Yu Z, Morrison M, (2004) Improved extraction of PCR-quality community DNA from digesta and fecal samples. Biotechniques 36: 808-812.
-
(2004)
Biotechniques
, vol.36
, pp. 808-812
-
-
Yu, Z.1
Morrison, M.2
-
35
-
-
0008048504
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
-
Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, et al. (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci U S A 82: 6955-6959.
-
(1985)
Proc Natl Acad Sci U S A
, vol.82
, pp. 6955-6959
-
-
Lane, D.J.1
Pace, B.2
Olsen, G.J.3
Stahl, D.A.4
Sogin, M.L.5
-
36
-
-
0041654220
-
Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis
-
Kruskal JB, (1964) Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika 29: 1-27.
-
(1964)
Psychometrika
, vol.29
, pp. 1-27
-
-
Kruskal, J.B.1
-
37
-
-
50249150207
-
Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities
-
Schutte UM, Abdo Z, Bent SJ, Shyu C, Williams CJ, et al. (2008) Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities. Appl Microbiol Biotechnol 80: 365-380.
-
(2008)
Appl Microbiol Biotechnol
, vol.80
, pp. 365-380
-
-
Schutte, U.M.1
Abdo, Z.2
Bent, S.J.3
Shyu, C.4
Williams, C.J.5
-
40
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
-
41
-
-
71749099862
-
phyloXML: XML for evolutionary biology and comparative genomics
-
Han MV, Zmasek CM, (2009) phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics 10: 356.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 356
-
-
Han, M.V.1
Zmasek, C.M.2
-
42
-
-
1342288004
-
The Jalview Java alignment editor
-
Clamp M, Cuff J, Searle SM, Barton GJ, (2004) The Jalview Java alignment editor. Bioinformatics 20: 426-427.
-
(2004)
Bioinformatics
, vol.20
, pp. 426-427
-
-
Clamp, M.1
Cuff, J.2
Searle, S.M.3
Barton, G.J.4
|