-
1
-
-
0021314461
-
Structural and functional aspects of domain motions in proteins
-
Bennet WS, Huber R (1984) Structural and functional aspects of domain motions in proteins. Critical Review in Biochemistry 15: 291-384.
-
(1984)
Critical Review in Biochemistry
, vol.15
, pp. 291-384
-
-
Bennet, W.S.1
Huber, R.2
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Research 28: 235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
4
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
DOI 10.1021/bi00188a001
-
Gerstein M, Lesk AM, Chothia C (1994) Structural mechanisms for domain movements in proteins. Biochemistry 33: 6739-6749. (Pubitemid 24190795)
-
(1994)
Biochemistry
, vol.33
, Issue.22
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
5
-
-
0032530836
-
A database of macromolecular motions
-
DOI 10.1093/nar/26.18.4280
-
Gerstein M, Krebs W (1998) A database of macromolecular motions. Nucleic Acids Research 26: 4280-4290. (Pubitemid 28418388)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.18
, pp. 4280-4290
-
-
Gerstein, M.1
Krebs, W.2
-
6
-
-
12344307441
-
Conformational changes observed in enzyme crystal structures upon substrate binding
-
DOI 10.1016/j.jmb.2004.11.013, PII S0022283604014391
-
Gutteridge A, Thornton J (2005) Conformational changes observed in enzyme crystal structures upon substrate binding. Journal of Molecular Biology 346: 21-28. (Pubitemid 40128303)
-
(2005)
Journal of Molecular Biology
, vol.346
, Issue.1
, pp. 21-28
-
-
Gutteridge, A.1
Thornton, J.2
-
7
-
-
43449099725
-
Protein structural change upon ligand binding correlates with enzymatic reaction mechanism
-
Koike R, Amemiya T, Ota M, Kidera A (2008) Protein structural change upon ligand binding correlates with enzymatic reaction mechanism. Journal of Molecular Biology 379: 397-401.
-
(2008)
Journal of Molecular Biology
, vol.379
, pp. 397-401
-
-
Koike, R.1
Amemiya, T.2
Ota, M.3
Kidera, A.4
-
8
-
-
0032006209
-
Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme
-
DOI 10.1002/(SICI)1097-0134(19980201)30:2<144::AID
-
Hayward S, Berendsen HJC (1998) Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme. Proteins 30: 144-154. (Pubitemid 28080149)
-
(1998)
Proteins: Structure, Function and Genetics
, vol.30
, Issue.2
, pp. 144-154
-
-
Hayward, S.1
Berendsen, H.J.C.2
-
9
-
-
0036888353
-
Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50
-
DOI 10.1016/S1093-3263(02)00140-7, PII S1093326302001407
-
Hayward S, Lee RA (2002) Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50. Journal of Molecular Graphics and Modelling 21: 181-183. (Pubitemid 35279848)
-
(2002)
Journal of Molecular Graphics and Modelling
, vol.21
, Issue.3
, pp. 181-183
-
-
Hayward, S.1
Lee, R.A.2
-
10
-
-
0032769661
-
Structural principles governing domain motions in proteins
-
Hayward S (1999) Structural principles governing domain motions in proteins. Proteins 36: 425-435.
-
(1999)
Proteins
, vol.36
, pp. 425-435
-
-
Hayward, S.1
-
11
-
-
20844448232
-
A comprehensive and non-redundant database of protein domain movements
-
DOI 10.1093/bioinformatics/bti420
-
Qi G, Lee RA, Hayward S (2005) A comprehensive and non-redundant database of protein domain movements. Bioinformatics 21: 2832-2838. (Pubitemid 40862280)
-
(2005)
Bioinformatics
, vol.21
, Issue.12
, pp. 2832-2838
-
-
Qi, G.1
Lee, R.2
Hayward, S.3
-
12
-
-
65349173946
-
Database of ligand-induced domain movements in enzymes
-
Qi GY, Hayward S (2009) Database of ligand-induced domain movements in enzymes. BMC Structural Biology 9.
-
(2009)
BMC Structural Biology
, vol.9
-
-
Qi, G.Y.1
Hayward, S.2
-
13
-
-
79953905577
-
Classification and Annotation of the Relationship between Protein Structural Change and Ligand Binding
-
Amemiya T, Koike R, Fuchigami S, Ikeguchi M, Kidera A (2011) Classification and Annotation of the Relationship between Protein Structural Change and Ligand Binding. Journal of Molecular Biology 408: 568-584.
-
(2011)
Journal of Molecular Biology
, vol.408
, pp. 568-584
-
-
Amemiya, T.1
Koike, R.2
Fuchigami, S.3
Ikeguchi, M.4
Kidera, A.5
-
15
-
-
37849035176
-
What is the relationship between the global structures of apo and holo proteins?
-
Brylinski M, Skolnick J (2008) What is the relationship between the global structures of apo and holo proteins? Proteins-Structure Function and Bioinformatics 70: 363-377.
-
(2008)
Proteins-Structure Function and Bioinformatics
, vol.70
, pp. 363-377
-
-
Brylinski, M.1
Skolnick, J.2
-
16
-
-
0035659482
-
Interdomain interactions in hinge-bending transitions
-
DOI 10.1016/S0969-2126(01)00687-6, PII S0969212601006876
-
Sinha N, Kumar S, Nussinov R (2001) Interdomain interactions in hinge-bending transitions. Structure 9: 1165-1181. (Pubitemid 34025051)
-
(2001)
Structure
, vol.9
, Issue.12
, pp. 1165-1181
-
-
Sinha, N.1
Kumar, S.2
Nussinov, R.3
-
17
-
-
0030888546
-
Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme
-
DOI 10.1002/(SICI)1097-0134(199703)27:3<425::AID-P
-
Hayward S, Kitao A, Berendsen HJC (1997) Model free methods to analyze domain motions in proteins from simulation. A comparison of a normal mode analysis and a molecular dynamics simulation of lysozyme. Proteins 27: 425-437. (Pubitemid 27149294)
-
(1997)
Proteins: Structure, Function and Genetics
, vol.27
, Issue.3
, pp. 425-437
-
-
Hayward, S.1
Kitao, A.2
Berendsen, H.J.C.3
-
18
-
-
0027438949
-
Domain closure in lactoferrin. Two hinges produce a see-saw motion between alternative close-packed interfaces
-
DOI 10.1006/jmbi.1993.1592
-
Gerstein M, Lesk AM, Baker EN, Anderson B, Norris G, et al. (1993) Domain closure in lactoferrin: Two hinges produce a see-saw motion between alternative close-packed interfaces. Journal of Molecular Biology 234: 357-372. (Pubitemid 23361207)
-
(1993)
Journal of Molecular Biology
, vol.234
, Issue.2
, pp. 357-372
-
-
Gerstein, M.1
Anderson, B.F.2
Norris, G.E.3
Baker, E.N.4
Lesk, A.M.5
Chothia, C.6
-
19
-
-
0036878154
-
An analysis of protein domain linkers: Their classification and role in protein folding
-
George RA, Heringa J (2002) An analysis of protein domain linkers: their classification and role in protein folding. Protein Engineering 15: 871-879. (Pubitemid 36172724)
-
(2002)
Protein Engineering
, vol.15
, Issue.11
, pp. 871-879
-
-
George, R.A.1
Heringa, J.2
-
20
-
-
66249128912
-
A method for the analysis of domain movements in large biomolecular complexes
-
Poornam GP, Matsumoto A, Ishida H, Hayward S (2009) A method for the analysis of domain movements in large biomolecular complexes. Proteins 76: 201-212.
-
(2009)
Proteins
, vol.76
, pp. 201-212
-
-
Poornam, G.P.1
Matsumoto, A.2
Ishida, H.3
Hayward, S.4
|