-
1
-
-
0036217489
-
Investigating structural changes induced by nucleotide binding to RecA using difference FTIR
-
Butler BC, Hanchett RH, Rafailov H, MacDonald G. Investigating structural changes induced by nucleotide binding to RecA using difference FTIR. Biophys J 2002;82:2198-2210.
-
(2002)
Biophys J
, vol.82
, pp. 2198-2210
-
-
Butler, B.C.1
Hanchett, R.H.2
Rafailov, H.3
MacDonald, G.4
-
2
-
-
0023820498
-
Structural changes in the NH2-terminal domain of fibronectin upon interaction with heparin. Relationship to matrix-driven translocation
-
Khan MY, Jaikaria NS, Frenz DA, Villanueva G, Newman SA. Structural changes in the NH2-terminal domain of fibronectin upon interaction with heparin. Relationship to matrix-driven translocation. J Biol Chem 1988;263:11314-11318.
-
(1988)
J Biol Chem
, vol.263
, pp. 11314-11318
-
-
Khan, M.Y.1
Jaikaria, N.S.2
Frenz, D.A.3
Villanueva, G.4
Newman, S.A.5
-
3
-
-
0027470667
-
Conformational changes in chicken thyroid hormone receptor α1 induced by binding to ligand or to DNA
-
Toney JH, Wu L, Summerfield AE, Sanyal G, Forman BM, Zhu J, Samuels HH. Conformational changes in chicken thyroid hormone receptor α1 induced by binding to ligand or to DNA. Biochemistry 1993;32:2-6.
-
(1993)
Biochemistry
, vol.32
, pp. 2-6
-
-
Toney, J.H.1
Wu, L.2
Summerfield, A.E.3
Sanyal, G.4
Forman, B.M.5
Zhu, J.6
Samuels, H.H.7
-
4
-
-
0030967839
-
Cyclic nucleotide-gated channels: Structural basis of ligand efficacy and allosteric modulation
-
Li J, Zagotta WN, Lester HA. Cyclic nucleotide-gated channels: structural basis of ligand efficacy and allosteric modulation. Q Rev Biophys 1997;30:177-193.
-
(1997)
Q Rev Biophys
, vol.30
, pp. 177-193
-
-
Li, J.1
Zagotta, W.N.2
Lester, H.A.3
-
5
-
-
0242381351
-
Ligand binding-induced conformational changes in riboflavin kinase: Structural basis for the ordered mechanism
-
Karthikeyan S, Zhou Q, Osterman AL, Zhang H. Ligand binding-induced conformational changes in riboflavin kinase: structural basis for the ordered mechanism. Biochemistry 2003;42:12532-12538.
-
(2003)
Biochemistry
, vol.42
, pp. 12532-12538
-
-
Karthikeyan, S.1
Zhou, Q.2
Osterman, A.L.3
Zhang, H.4
-
6
-
-
0030802519
-
The co-crystal structure of unliganded bovine α-thrombin and prethrombin-2: Movement of the Tyr-Pro-Pro-Trp segment and active site residues upon ligand binding
-
Malkowski MG, Martin PD, Guzik JC, Edwards BF. The co-crystal structure of unliganded bovine α-thrombin and prethrombin-2: movement of the Tyr-Pro-Pro-Trp segment and active site residues upon ligand binding. Protein Sci 1997;6:1438-1448.
-
(1997)
Protein Sci
, vol.6
, pp. 1438-1448
-
-
Malkowski, M.G.1
Martin, P.D.2
Guzik, J.C.3
Edwards, B.F.4
-
7
-
-
15244353539
-
Side-chain flexibility in protein-ligand binding: The minimal rotation hypothesis
-
Zavodszky MI, Kuhn LA. Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis. Protein Sci 2005;14:1104-1114.
-
(2005)
Protein Sci
, vol.14
, pp. 1104-1114
-
-
Zavodszky, M.I.1
Kuhn, L.A.2
-
9
-
-
0033485716
-
Effects of ligand binding on the internal dynamics of maltose-binding protein
-
Doring K, Surrey T, Nollert P, Jahnig F. Effects of ligand binding on the internal dynamics of maltose-binding protein. Eur J Biochem 1999;266:477-483.
-
(1999)
Eur J Biochem
, vol.266
, pp. 477-483
-
-
Doring, K.1
Surrey, T.2
Nollert, P.3
Jahnig, F.4
-
10
-
-
0036040533
-
Conformational changes during the catalytic cycle of gluconate kinase as revealed by X-ray crystallography
-
Kraft L, Sprenger GA, Lindqvist Y. Conformational changes during the catalytic cycle of gluconate kinase as revealed by X-ray crystallography. J Mol Biol 2002;318:1057-1069.
-
(2002)
J Mol Biol
, vol.318
, pp. 1057-1069
-
-
Kraft, L.1
Sprenger, G.A.2
Lindqvist, Y.3
-
12
-
-
0035876277
-
Domain closure mechanism in transferrins: New viewpoints about the hinge structure and motion as deduced from high resolution crystal structures of ovotransferrin N-lobe
-
Mizutani K, Mikami B, Hirose M. Domain closure mechanism in transferrins: new viewpoints about the hinge structure and motion as deduced from high resolution crystal structures of ovotransferrin N-lobe. J Mol Biol 2001;309:937-947.
-
(2001)
J Mol Biol
, vol.309
, pp. 937-947
-
-
Mizutani, K.1
Mikami, B.2
Hirose, M.3
-
13
-
-
0024743903
-
Efficient expression and characterization of isolated structural domains of yeast phosphoglycerate kinase generated by site-directed mutagenesis
-
Minard P, Hall L, Betton JM, Missiakas D, Yon JM. Efficient expression and characterization of isolated structural domains of yeast phosphoglycerate kinase generated by site-directed mutagenesis. Protein Eng 1989;3:55-60.
-
(1989)
Protein Eng
, vol.3
, pp. 55-60
-
-
Minard, P.1
Hall, L.2
Betton, J.M.3
Missiakas, D.4
Yon, J.M.5
-
14
-
-
0030987203
-
An engineered amino-terminal domain of yeast phosphoglycerate kinase with native-like structure
-
Sherman MA, Chen Y, Mas MT. An engineered amino-terminal domain of yeast phosphoglycerate kinase with native-like structure. Protein Sci 1997;6:882-891.
-
(1997)
Protein Sci
, vol.6
, pp. 882-891
-
-
Sherman, M.A.1
Chen, Y.2
Mas, M.T.3
-
15
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
Gerstein M, Lesk AM, Chothia C. Structural mechanisms for domain movements in proteins. Biochemistry 1994;33:6739-6749.
-
(1994)
Biochemistry
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
16
-
-
0021604916
-
Mechanisms of domain closure in proteins
-
Lesk AM, Chothia C. Mechanisms of domain closure in proteins. J Mol Biol 1984;174:175-191.
-
(1984)
J Mol Biol
, vol.174
, pp. 175-191
-
-
Lesk, A.M.1
Chothia, C.2
-
17
-
-
0035102591
-
Probing conformational changes in the estrogen receptor: Evidence for a partially unfolded intermediate facilitating ligand binding and release
-
Gee AC, Katzenellenbogen JA. Probing conformational changes in the estrogen receptor: evidence for a partially unfolded intermediate facilitating ligand binding and release. Mol Endocrinol 2001;15:421-428.
-
(2001)
Mol Endocrinol
, vol.15
, pp. 421-428
-
-
Gee, A.C.1
Katzenellenbogen, J.A.2
-
18
-
-
0242268469
-
Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins
-
Miyashita O, Onuchic JN, Wolynes PG. Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins. Proc Natl Acad Sci USA 2003;100:12570-12575.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12570-12575
-
-
Miyashita, O.1
Onuchic, J.N.2
Wolynes, P.G.3
-
19
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
20
-
-
0037246863
-
MolMovDB: Analysis and visualization of conformational change and structural flexibility
-
Echols N, Milburn D, Gerstein M. MolMovDB: analysis and visualization of conformational change and structural flexibility. Nucleic Acids Res 2003;31:478-482.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 478-482
-
-
Echols, N.1
Milburn, D.2
Gerstein, M.3
-
21
-
-
0032530836
-
A database of macromolecular motions
-
Gerstein M, Krebs W. A database of macromolecular motions. Nucleic Acids Res 1998;26:4280-4290.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4280-4290
-
-
Gerstein, M.1
Krebs, W.2
-
22
-
-
0036721233
-
Normal mode analysis of macromolecular motions in a database framework: Developing mode concentration as a useful classifying statistic
-
Krebs WG, Alexandrov V, Wilson CA, Echols N, Yu H, Gerstein M. Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic. Proteins 2002;48:682-695.
-
(2002)
Proteins
, vol.48
, pp. 682-695
-
-
Krebs, W.G.1
Alexandrov, V.2
Wilson, C.A.3
Echols, N.4
Yu, H.5
Gerstein, M.6
-
23
-
-
0038156098
-
The DynDom database of protein domain motions
-
Lee RA, Razaz M, Hayward S. The DynDom database of protein domain motions. Bioinformatics 2003;19:1290-1291.
-
(2003)
Bioinformatics
, vol.19
, pp. 1290-1291
-
-
Lee, R.A.1
Razaz, M.2
Hayward, S.3
-
24
-
-
20844448232
-
A comprehensive and non-redundant database of protein domain movements
-
Qi G, Lee R, Hayward S. A comprehensive and non-redundant database of protein domain movements. Bioinformatics 2005;21:2832-2838.
-
(2005)
Bioinformatics
, vol.21
, pp. 2832-2838
-
-
Qi, G.1
Lee, R.2
Hayward, S.3
-
25
-
-
0037379786
-
Ligand-induced conformational changes: Improved predictions of ligand binding conformations and affinities
-
Frimurer TM, Peters GH, Iversen LF, Andersen HS, Moller NP, Olsen OH. Ligand-induced conformational changes: improved predictions of ligand binding conformations and affinities. Biophys J 2003;84:2273-2281.
-
(2003)
Biophys J
, vol.84
, pp. 2273-2281
-
-
Frimurer, T.M.1
Peters, G.H.2
Iversen, L.F.3
Andersen, H.S.4
Moller, N.P.5
Olsen, O.H.6
-
26
-
-
0032619001
-
An attempt to analyse progress in fold recognition from CASP1 to CASP3
-
Sippl MJ, Lackner P, Domingues FS, Koppensteiner WA. An attempt to analyse progress in fold recognition from CASP1 to CASP3. Proteins 1999;Suppl 3:226-230.
-
(1999)
Proteins
, Issue.SUPPL. 3
, pp. 226-230
-
-
Sippl, M.J.1
Lackner, P.2
Domingues, F.S.3
Koppensteiner, W.A.4
-
27
-
-
0242267499
-
Assessment of progress over the CASP experiments
-
Venclovas C, Zemla A, Fidelis K, Moult J. Assessment of progress over the CASP experiments. Proteins 2003;53 (Suppl 6):585-595.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 585-595
-
-
Venclovas, C.1
Zemla, A.2
Fidelis, K.3
Moult, J.4
-
28
-
-
0035703310
-
Processing and evaluation of predictions in CASP4
-
Zemla A, Venclovas C, Moult J, Fidelis K. Processing and evaluation of predictions in CASP4. Proteins 2001;Suppl 5:13-21.
-
(2001)
Proteins
, Issue.SUPPL. 5
, pp. 13-21
-
-
Zemla, A.1
Venclovas, C.2
Moult, J.3
Fidelis, K.4
-
29
-
-
0242362160
-
-
Kosinski J, Cymerman IA, Feder M, Kurowski MA, Sasin JM, Bujnicki JM. A FRankenstein's monster approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation. Proteins 2003;53 (Suppl 6):369-379.
-
Kosinski J, Cymerman IA, Feder M, Kurowski MA, Sasin JM, Bujnicki JM. A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation. Proteins 2003;53 (Suppl 6):369-379.
-
-
-
-
30
-
-
16644386061
-
Tertiary structure predictions on a comprehensive benchmark of medium to large size proteins
-
Zhang Y, Skolnick J. Tertiary structure predictions on a comprehensive benchmark of medium to large size proteins. Biophys J 2004;87:2647-2655.
-
(2004)
Biophys J
, vol.87
, pp. 2647-2655
-
-
Zhang, Y.1
Skolnick, J.2
-
31
-
-
30344483607
-
Free modeling with Rosetta in CASP6
-
Bradley P, Malmstrom L, Qian B, Schonbrun J, Chivian D, Kim DE, Meiler J, Misura KM, Baker D. Free modeling with Rosetta in CASP6. Proteins 2005;61 (Suppl 7):128-134.
-
(2005)
Proteins
, vol.61
, Issue.SUPPL. 7
, pp. 128-134
-
-
Bradley, P.1
Malmstrom, L.2
Qian, B.3
Schonbrun, J.4
Chivian, D.5
Kim, D.E.6
Meiler, J.7
Misura, K.M.8
Baker, D.9
-
32
-
-
0028915315
-
Modeling the quinone-B binding site of the photosystem-II reaction center using notions of complementarity and contact-surface between atoms
-
Sobolev V, Edelman M. Modeling the quinone-B binding site of the photosystem-II reaction center using notions of complementarity and contact-surface between atoms. Proteins 1995;21:214-225.
-
(1995)
Proteins
, vol.21
, pp. 214-225
-
-
Sobolev, V.1
Edelman, M.2
-
33
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev V, Sorokine A, Prilusky J, Abola EE, Edelman M. Automated analysis of interatomic contacts in proteins. Bioinformatics 1999;15:327-332.
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
35
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
36
-
-
0026482961
-
Tracking conformational states in allosteric transitions of phosphorylase
-
Browner MF, Fauman EB, Fletterick RJ. Tracking conformational states in allosteric transitions of phosphorylase. Biochemistry 1992;31:11297-11304.
-
(1992)
Biochemistry
, vol.31
, pp. 11297-11304
-
-
Browner, M.F.1
Fauman, E.B.2
Fletterick, R.J.3
-
37
-
-
0035838974
-
Extending the accuracy limits of prediction for side-chain conformations
-
Xiang Z, Honig B. Extending the accuracy limits of prediction for side-chain conformations. J Mol Biol 2001;311:421-430.
-
(2001)
J Mol Biol
, vol.311
, pp. 421-430
-
-
Xiang, Z.1
Honig, B.2
-
38
-
-
0028944876
-
Chemistry of sex attraction
-
Roelofs WL. Chemistry of sex attraction. Proc Natl Acad Sci USA 1995;92:44-49.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 44-49
-
-
Roelofs, W.L.1
-
39
-
-
0028789926
-
Olfaction in Lepidoptera
-
Hansson BS. Olfaction in Lepidoptera. Experientia 1995;51:1003-1027.
-
(1995)
Experientia
, vol.51
, pp. 1003-1027
-
-
Hansson, B.S.1
-
40
-
-
0019489601
-
Pheromone binding and inactivation by moth antennae
-
Vogt RG, Riddiford LM. Pheromone binding and inactivation by moth antennae. Nature 1981;293:161-163.
-
(1981)
Nature
, vol.293
, pp. 161-163
-
-
Vogt, R.G.1
Riddiford, L.M.2
-
41
-
-
0034141728
-
Sexual attraction in the silkworm moth: Structure of the pheromone-binding-protein-bombykol complex
-
Sandler BH, Nikonova L, Leal WS, Clardy J. Sexual attraction in the silkworm moth: structure of the pheromone-binding-protein-bombykol complex. Chem Biol 2000;7:143-151.
-
(2000)
Chem Biol
, vol.7
, pp. 143-151
-
-
Sandler, B.H.1
Nikonova, L.2
Leal, W.S.3
Clardy, J.4
-
42
-
-
24044469677
-
Coil-to-helix transition and ligand release of Bombyx mori pheromone-binding protein
-
Lautenschlager C, Leal WS, Clardy J. Coil-to-helix transition and ligand release of Bombyx mori pheromone-binding protein. Biochem Biophys Res Commun 2005;335:1044-1050.
-
(2005)
Biochem Biophys Res Commun
, vol.335
, pp. 1044-1050
-
-
Lautenschlager, C.1
Leal, W.S.2
Clardy, J.3
-
43
-
-
0025750805
-
Purification and partial characterization of 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase and 7,8-dihydropteroate synthase from Escherichia coli MC4100
-
Talarico TL, Dev IK, Dallas WS, Ferone R, Ray PH. Purification and partial characterization of 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase and 7,8-dihydropteroate synthase from Escherichia coli MC4100. J Bacteriol 1991;173:7029-7032.
-
(1991)
J Bacteriol
, vol.173
, pp. 7029-7032
-
-
Talarico, T.L.1
Dev, I.K.2
Dallas, W.S.3
Ferone, R.4
Ray, P.H.5
-
44
-
-
0013820394
-
Inhibition of folate biosynthesis and function as a basis for chemotherapy
-
Hitchings GH, Burchall JJ. Inhibition of folate biosynthesis and function as a basis for chemotherapy. Adv Enzymol Relat Areas Mol Biol 1965;27:417-468.
-
(1965)
Adv Enzymol Relat Areas Mol Biol
, vol.27
, pp. 417-468
-
-
Hitchings, G.H.1
Burchall, J.J.2
-
45
-
-
0347927707
-
Dynamic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: Crystallographic studies
-
Blaszczyk J, Li Y, Shi G, Yan H, Ji X. Dynamic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: crystallographic studies. Biochemistry 2003;42:1573-1580.
-
(2003)
Biochemistry
, vol.42
, pp. 1573-1580
-
-
Blaszczyk, J.1
Li, Y.2
Shi, G.3
Yan, H.4
Ji, X.5
-
46
-
-
1042299975
-
Essential roles of a dynamic loop in the catalysis of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
-
Blaszczyk J, Li Y, Wu Y, Shi G, Ji X, Yan H. Essential roles of a dynamic loop in the catalysis of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Biochemistry 2004;43:1469-1477.
-
(2004)
Biochemistry
, vol.43
, pp. 1469-1477
-
-
Blaszczyk, J.1
Li, Y.2
Wu, Y.3
Shi, G.4
Ji, X.5
Yan, H.6
-
47
-
-
0037452534
-
Catalytic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: Site-directed mutagenesis, and biochemical studies
-
Li Y, Wu Y, Blaszczyk J, Ji X, Yan H. Catalytic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: site-directed mutagenesis, and biochemical studies. Biochemistry 2003;42:1581-1588.
-
(2003)
Biochemistry
, vol.42
, pp. 1581-1588
-
-
Li, Y.1
Wu, Y.2
Blaszczyk, J.3
Ji, X.4
Yan, H.5
-
48
-
-
0035955664
-
Unusual conformational changes in 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase as revealed by X-ray crystallography and NMR
-
Xiao B, Shi G, Gao J, Blaszczyk J, Liu Q, Ji X, Yan H. Unusual conformational changes in 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase as revealed by X-ray crystallography and NMR. J Biol Chem 2001;276:40274-40281.
-
(2001)
J Biol Chem
, vol.276
, pp. 40274-40281
-
-
Xiao, B.1
Shi, G.2
Gao, J.3
Blaszczyk, J.4
Liu, Q.5
Ji, X.6
Yan, H.7
-
49
-
-
0034435395
-
Catalytic center assembly of HPPK as revealed by the crystal structure of a ternary complex at 1.25 A resolution
-
Blaszczyk J, Shi G, Yan H, Ji X. Catalytic center assembly of HPPK as revealed by the crystal structure of a ternary complex at 1.25 A resolution. Structure 2000;8:1049-1058.
-
(2000)
Structure
, vol.8
, pp. 1049-1058
-
-
Blaszczyk, J.1
Shi, G.2
Yan, H.3
Ji, X.4
-
50
-
-
0014028088
-
Purification and properties of guanylate kinase from Escherichia coli
-
Oeschger MP, Bessman MJ. Purification and properties of guanylate kinase from Escherichia coli. J Biol Chem 1966;241:5452-5460.
-
(1966)
J Biol Chem
, vol.241
, pp. 5452-5460
-
-
Oeschger, M.P.1
Bessman, M.J.2
-
51
-
-
0035896042
-
Crystal structure of unligated guanylate kinase from yeast reveals GMP-induced conformational changes
-
Blaszczyk J, Li Y, Yan H, Ji X. Crystal structure of unligated guanylate kinase from yeast reveals GMP-induced conformational changes. J Mol Biol 2001;307:247-257.
-
(2001)
J Mol Biol
, vol.307
, pp. 247-257
-
-
Blaszczyk, J.1
Li, Y.2
Yan, H.3
Ji, X.4
-
53
-
-
0013899456
-
Distribution and function of genes concerned with aromatic biosynthesis in Escherichia coli
-
Pittard J, Wallace BJ. Distribution and function of genes concerned with aromatic biosynthesis in Escherichia coli. J Bacteriol 1966;91:1494-1508.
-
(1966)
J Bacteriol
, vol.91
, pp. 1494-1508
-
-
Pittard, J.1
Wallace, B.J.2
-
54
-
-
1442349833
-
Structural studies of Streptococcus pneumoniae EPSP synthase in unliganded state, tetrahedral intermediate-bound state and S3P-GLP-bound state
-
Park H, Hilsenbeck JL, Kim HJ, Shuttleworth WA, Park YH, Evans JN, Kang C. Structural studies of Streptococcus pneumoniae EPSP synthase in unliganded state, tetrahedral intermediate-bound state and S3P-GLP-bound state. Mol Microbiol 2004;51:963-971.
-
(2004)
Mol Microbiol
, vol.51
, pp. 963-971
-
-
Park, H.1
Hilsenbeck, J.L.2
Kim, H.J.3
Shuttleworth, W.A.4
Park, Y.H.5
Evans, J.N.6
Kang, C.7
-
55
-
-
0035929237
-
Opening of the clamp: An intimate view of an ATP-driven biological machine
-
Ellison V, Stillman B. Opening of the clamp: an intimate view of an ATP-driven biological machine. Cell 2001;106:655-660.
-
(2001)
Cell
, vol.106
, pp. 655-660
-
-
Ellison, V.1
Stillman, B.2
-
57
-
-
0037334909
-
Nucleotide-induced conformational changes in an isolated Escherichia coli DNA polymerase III clamp loader subunit
-
Podobnik M, Weitze TF, O'Donnell M, Kuriyan J. Nucleotide-induced conformational changes in an isolated Escherichia coli DNA polymerase III clamp loader subunit. Structure 2003;11:253-263.
-
(2003)
Structure
, vol.11
, pp. 253-263
-
-
Podobnik, M.1
Weitze, T.F.2
O'Donnell, M.3
Kuriyan, J.4
-
59
-
-
33644967829
-
Ketopiperazine-based renin inhibitors: Optimization of the "C" ring
-
Holsworth DD, Cai C, Cheng XM, Cody WL, Downing DM, Erasga N, Lee C, Powell NA, Edmunds JJ, Stier M, Jalaie M, Zhang E, McConnell P, Ryan MJ, Bryant J, Li T, Kasani A, Hall E, Subedi R, Rahim M, Maiti S. Ketopiperazine-based renin inhibitors: optimization of the "C" ring. Bioorg Med Chem Lett 2006;16:2500-2504.
-
(2006)
Bioorg Med Chem Lett
, vol.16
, pp. 2500-2504
-
-
Holsworth, D.D.1
Cai, C.2
Cheng, X.M.3
Cody, W.L.4
Downing, D.M.5
Erasga, N.6
Lee, C.7
Powell, N.A.8
Edmunds, J.J.9
Stier, M.10
Jalaie, M.11
Zhang, E.12
McConnell, P.13
Ryan, M.J.14
Bryant, J.15
Li, T.16
Kasani, A.17
Hall, E.18
Subedi, R.19
Rahim, M.20
Maiti, S.21
more..
-
60
-
-
33749508861
-
The change of protein intradomain mobility on ligand binding: Is it a commonly observed phenomenon?
-
Yesylevskyy SO, Kharkyanen VN, Demchenko AP. The change of protein intradomain mobility on ligand binding: is it a commonly observed phenomenon? Biophys J 2006;91:3002-3013.
-
(2006)
Biophys J
, vol.91
, pp. 3002-3013
-
-
Yesylevskyy, S.O.1
Kharkyanen, V.N.2
Demchenko, A.P.3
-
61
-
-
0035979721
-
Allosteric activation of a spring-loaded natriuretic peptide receptor dimer by hormone
-
He X, Chow D, Martick MM, Garcia KC. Allosteric activation of a spring-loaded natriuretic peptide receptor dimer by hormone. Science 2001;293:1657-1662.
-
(2001)
Science
, vol.293
, pp. 1657-1662
-
-
He, X.1
Chow, D.2
Martick, M.M.3
Garcia, K.C.4
-
62
-
-
0030896261
-
The rational design of allosteric interactions in a monomeric protein and its applications to the construction of biosensors
-
Marvin JS, Corcoran EE, Hattangadi NA, Zhang JV, Gere SA, Hellinga HW. The rational design of allosteric interactions in a monomeric protein and its applications to the construction of biosensors. Proc Natl Acad Sci USA 1997;94:4366-4371.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 4366-4371
-
-
Marvin, J.S.1
Corcoran, E.E.2
Hattangadi, N.A.3
Zhang, J.V.4
Gere, S.A.5
Hellinga, H.W.6
-
63
-
-
0029834194
-
The mechanism of velocity modulated allosteric regulation in D-3-phosphoglycerate dehydrogenase. Site-directed mutagenesis of effector binding site residues
-
Al-Rabiee R, Zhang Y, Grant GA. The mechanism of velocity modulated allosteric regulation in D-3-phosphoglycerate dehydrogenase. Site-directed mutagenesis of effector binding site residues. J Biol Chem 1996;271:23235-23238.
-
(1996)
J Biol Chem
, vol.271
, pp. 23235-23238
-
-
Al-Rabiee, R.1
Zhang, Y.2
Grant, G.A.3
-
64
-
-
29344443515
-
Substrate-assisted movement of the catalytic Lys 215 during domain closure: Site-directed mutagenesis studies of human 3-phosphoglycerate kinase
-
Flachner B, Varga A, Szabo J, Barna L, Hajdu I, Gyimesi G, Zavodszky P, Vas M. Substrate-assisted movement of the catalytic Lys 215 during domain closure: site-directed mutagenesis studies of human 3-phosphoglycerate kinase. Biochemistry 2005;44:16853-16865.
-
(2005)
Biochemistry
, vol.44
, pp. 16853-16865
-
-
Flachner, B.1
Varga, A.2
Szabo, J.3
Barna, L.4
Hajdu, I.5
Gyimesi, G.6
Zavodszky, P.7
Vas, M.8
-
65
-
-
0036888353
-
-
Hayward S, Lee RA. Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50. J Mol Graph Model 2002;21:181-183
-
Hayward S, Lee RA. Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50. J Mol Graph Model 2002;21:181-183.
-
-
-
-
66
-
-
0030883755
-
Protein domain movements: Detection of rigid domains and visualization of hinges in comparisons of atomic coordinates
-
Wriggers W, Schulten K. Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates. Proteins 1997;29:1-14.
-
(1997)
Proteins
, vol.29
, pp. 1-14
-
-
Wriggers, W.1
Schulten, K.2
-
67
-
-
14144256567
-
Normal modes for predicting protein motions: A comprehensive database assessment and associated Web tool
-
Alexandrov V, Lehnert U, Echols N, Milburn D, Engelman D, Gerstein M. Normal modes for predicting protein motions: a comprehensive database assessment and associated Web tool. Protein Sci 2005;14:633-643.
-
(2005)
Protein Sci
, vol.14
, pp. 633-643
-
-
Alexandrov, V.1
Lehnert, U.2
Echols, N.3
Milburn, D.4
Engelman, D.5
Gerstein, M.6
-
68
-
-
0032769661
-
Structural principles governing domain motions in proteins
-
Hayward S. Structural principles governing domain motions in proteins. Proteins 1999;36:425-435.
-
(1999)
Proteins
, vol.36
, pp. 425-435
-
-
Hayward, S.1
-
69
-
-
0030590215
-
A functional role for protein cavities in domain: Domain motions
-
Hubbard SJ, Argos P. A functional role for protein cavities in domain: domain motions. J Mol Biol 1996;261:289-300.
-
(1996)
J Mol Biol
, vol.261
, pp. 289-300
-
-
Hubbard, S.J.1
Argos, P.2
-
70
-
-
12144281353
-
Conservation of orientation and sequence in protein domain - domain interactions
-
Littler SJ, Hubbard SJ. Conservation of orientation and sequence in protein domain - domain interactions. J Mol Biol 2005;345:1265-1279.
-
(2005)
J Mol Biol
, vol.345
, pp. 1265-1279
-
-
Littler, S.J.1
Hubbard, S.J.2
-
71
-
-
0242362175
-
Comparative modeling in CASP5: Progress is evident, but alignment errors remain a significant hindrance
-
Venclovas C. Comparative modeling in CASP5: progress is evident, but alignment errors remain a significant hindrance. Proteins 2003;53 (Suppl 6):380-388.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 380-388
-
-
Venclovas, C.1
|