Diversity of lactic acid bacteria associated with fresh coffee cherries in taiwan

Current Microbiology

Volumn 68, Issue 4, 2014, Pages 440-447

  Leong, Kun Hon ^a   Chen, Yi Sheng ^a   Pan, Shwu Fen ^a   Chen, Jen Jye ^a   Wu, Hui Chung ^a   Chang, Yu Chung ^a   Yanagida, Fujitoshi ^b  

^a MING CHUAN UNIVERSITY   (Taiwan)

^b UNIVERSITY OF YAMANASHI   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COFFEE; DNA, BACTERIAL; FRUIT; LACTOBACILLALES; PHYLOGENY; RNA, RIBOSOMAL, 16S; TAIWAN;

EID: 84893983438     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-013-0495-2     Document Type: Article

References (24)

1. Avallone S, Guyot B, Brillouet JM, Olguin E, Guiraud JP (2001) Microbiological and biochemical study of coffee fermentation. Curr Microbiol 42:252-256
2. Avallone S, Brillouet JM, Guyot B, Olguin E, Guiraud JP (2002) Involvement of pectolytic micro-organisms in coffee fermentation. Int J Food Sci Technol 37:191-198
3. Batista LR, Chalfoun SM, Prado G, Schwan RF, Wheals AE (2003) Toxigenic fungi associated with processed (green) coffee beans (Coffea arabica L.). Int J Food Microbiol 85:293-300
4. Chen YS, Wu HC, Pan SF, Lin BG, Lin YH, Tung WC, Li YL, Chiang CM, Yanagida F (2013) Isolation and characterization of lactic acid bacteria from yan-taozih (pickled peaches) in Taiwan. Ann Microbiol 63:607-614
5. Crowley S, Mahony J, van Sinderen D (2013) Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models. Folia Microbiol 58:291-299
6. De Bruyne K, Schillinger U, Caroline L, Boehringer B, Cleenwerck I, Vancanneyt M, De Vuyst L, Franz CM, Vandamme P (2007) Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee fermentation and assessment of sequence analysis of housekeeping genes for delineation of Leuconostoc species. Int J Syst Evol Microbiol 57:2952-2959
7. Djossou O, Perraud-Gaime I, Mirleau FL, Rodriguez-Serrano G, Karou G, Niamke S, Ouzari I, Boudabous A, Roussos S (2011) Robusta coffee beans post-harvest microflora: Lactobacillus plantarum sp. as potential antagonist of Aspergillus carbonarius. Anaerobe 17:267-272
8. Gamboa-Gaitán MÁ (2012) Presence of Aspergillus and other fungal symbionts in coffee beans from Colombia. Acta Biol Colomb 17:39-50
9. Guzmán-López O, Loera O, Parada JL, Castillo-Morales A, Martínez-Ramírez C, Augur C, Gaime-Perraud I, Saucedo- Castañeda G (2009) Microcultures of lactic acid bacteria: characterization and selection of strains, optimization of nutrients and gallic acid concentration. J Ind Microbiol Biotechnol 36:11-20
10. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
11. Kozaki M, Uchimura T, Okada S (1992) Experimental manual of lactic acid bacteria. Asakurasyoten, Tokyo, pp 29-72
12. Kumar S, Kunwar A, Gautam S, Sharma A (2012) Inactivation of A. ochraceus spores and detoxification of ochratoxin A in coffee beans by gamma irradiation. J Food Sci 77:T44-T51
13. Lan WT, Chen YS, Wu HC, Yanagida F (2012) Bio-protective potential of lactic acid bacteria isolated from fermented wax gourd. Folia Microbiol 57:99-105
14. Magnani M, Fernandes T, Prete CEC, Homechim M, Ono EYS, Vilas-Boas LA, Sartori D, Furlaneto MC, Fungaro MHP (2005) Molecular identification of Aspergillus spp. isolated from coffee beans. Sci Agric 62:45-49
15. Naser SM, Thompson FL, Hoste B, Gevers D, Dawyndt P, Vancanneyt M, Swings J (2005) Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151:2141-2150
16. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
17. Schillinger U, Boehringer B, Wallbaum S, Caroline L, Gonfa A, Kostinek MHN, Holzapfel WH, Franz CM (2008) A genus-specific PCR method for differentiation between Leuconostoc and Weissella and its application in identification of heterofermentative lactic acid bacteria from coffee fermentation. FEMS Microbiol Lett 286:222-226
18. Sheu DS, Wang YT, Lee CY (2000) Rapid detection of polyhydroxyalkanoate- accumulating bacteria isolated from the environment by colony PCR. Microbiology 146:2019-2025
19. Silva CF, Batista LR, Abreu LM, Dias ES, Schwan RF (2008) Succession of bacterial and fungal communities during natural coffee (Coffea arabica) fermentation. Food Microbiol 25:951-957
20. Su SW (2007) Tea or coffee: a study of the beverage choice pattern and its affecting factors at teatime in Kaohsiung, Taiwan. Asia Pac Manag Rev 12:245-257
21. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
22. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
23. Torriani S, Felis GE, Dellaglio F (2001) Differentiation of Lactobacillus plantarum, Lactobacillus pentosus, and Lactobacillus paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA gene-derived primers. Appl Environ Microbiol 67:3450-3454
24. Yanagida F, Chen Y, Onda T, Shinohara T (2005) Durancin L28-1A, a new bacteriocin from Enterococcus durans L28-1, isolated from soil. Lett Appl Microbiol 40:430-435