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Volumn 538, Issue 2, 2014, Pages 366-372

Novel transcriptome data analysis implicates circulating microRNAs in epigenetic inheritance in mammals

Author keywords

Extracellular microRNA; Transcriptomic; Transgenerational inheritance

Indexed keywords

EXTRACELLULAR MICRORNA; TRANSCRIPTOMIC; TRANSGENERATIONAL INHERITANCE;

EID: 84893979511     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.01.051     Document Type: Article
Times cited : (27)

References (64)
  • 1
    • 39849111033 scopus 로고    scopus 로고
    • MiRNAminer: a tool for homologous microRNA gene search
    • Artzi S., Kiezun A., Shomron N. miRNAminer: a tool for homologous microRNA gene search. BMC Bioinforma. 2008, 9:39.
    • (2008) BMC Bioinforma. , vol.9 , pp. 39
    • Artzi, S.1    Kiezun, A.2    Shomron, N.3
  • 2
    • 84863611417 scopus 로고    scopus 로고
    • PiRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans
    • Ashe A., et al. piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans. Cell 2012, 150:88-99.
    • (2012) Cell , vol.150 , pp. 88-99
    • Ashe, A.1
  • 3
    • 84878022987 scopus 로고    scopus 로고
    • ShortStack: comprehensive annotation and quantification of small RNA genes
    • Axtell M.J. ShortStack: comprehensive annotation and quantification of small RNA genes. RNA 2013, 19:740-751.
    • (2013) RNA , vol.19 , pp. 740-751
    • Axtell, M.J.1
  • 4
    • 84872849505 scopus 로고    scopus 로고
    • Transgenerational epigenetic effects on brain functions
    • Bohacek J., Gapp K., Saab B.J., Mansuy I.M. Transgenerational epigenetic effects on brain functions. Biol. Psychiatry 2013, 73:313-320.
    • (2013) Biol. Psychiatry , vol.73 , pp. 313-320
    • Bohacek, J.1    Gapp, K.2    Saab, B.J.3    Mansuy, I.M.4
  • 5
    • 84878007848 scopus 로고    scopus 로고
    • Epigenetics and transgenerational inheritance
    • Brasset E., Chambeyron S. Epigenetics and transgenerational inheritance. Genome Biol. 2013, 14:306.
    • (2013) Genome Biol. , vol.14 , pp. 306
    • Brasset, E.1    Chambeyron, S.2
  • 6
    • 84866516239 scopus 로고    scopus 로고
    • A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality
    • Buckley B.A., et al. A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality. Nature 2012, 489:447-451.
    • (2012) Nature , vol.489 , pp. 447-451
    • Buckley, B.A.1
  • 7
    • 83755183247 scopus 로고    scopus 로고
    • Nuclear RNAi maintains heritable gene silencing in Caenorhabditis elegans
    • (19683-16988)
    • Burton N.O., Burkhart K.B., Kennedy S. Nuclear RNAi maintains heritable gene silencing in Caenorhabditis elegans. Proc. Natl. Acad. Sci. U. S. A. 2011, 108. (19683-16988).
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108
    • Burton, N.O.1    Burkhart, K.B.2    Kennedy, S.3
  • 8
    • 77957153139 scopus 로고    scopus 로고
    • Small RNAs are on the move
    • Chitwood D.H., Timmermans M.C. Small RNAs are on the move. Nature 2010, 467:415-419.
    • (2010) Nature , vol.467 , pp. 415-419
    • Chitwood, D.H.1    Timmermans, M.C.2
  • 10
    • 84857189974 scopus 로고    scopus 로고
    • Understanding transgenerational epigenetic inheritance via the gametes in mammals
    • Daxinger L., Whitelaw E. Understanding transgenerational epigenetic inheritance via the gametes in mammals. Nat. Rev. Genet. 2012, 13:153-162.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 153-162
    • Daxinger, L.1    Whitelaw, E.2
  • 12
    • 84874953395 scopus 로고    scopus 로고
    • Deep sequencing identifies circulating mouse miRNAs that are functionally implicated in manifestations of aging and responsive to calorie restriction
    • Dhahbi J.M., et al. Deep sequencing identifies circulating mouse miRNAs that are functionally implicated in manifestations of aging and responsive to calorie restriction. Aging (Albany NY) 2013, 5:130-141.
    • (2013) Aging (Albany NY) , vol.5 , pp. 130-141
    • Dhahbi, J.M.1
  • 13
    • 84871413568 scopus 로고    scopus 로고
    • The curious case of miRNAs in circulation: potential diagnostic biomarkers?
    • Duttagupta R., Jones K.W. The curious case of miRNAs in circulation: potential diagnostic biomarkers?. Wiley Interdiscip. Rev. RNA 2013, 4:129-138.
    • (2013) Wiley Interdiscip. Rev. RNA , vol.4 , pp. 129-138
    • Duttagupta, R.1    Jones, K.W.2
  • 14
    • 79959805164 scopus 로고    scopus 로고
    • MiRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes
    • Dweep H., Sticht C., Pandey P., Gretz N. miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes. J. Biomed. Inform. 2011, 44(2011):839-847.
    • (2011) J. Biomed. Inform. , vol.44 , Issue.2011 , pp. 839-847
    • Dweep, H.1    Sticht, C.2    Pandey, P.3    Gretz, N.4
  • 16
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A., Xu S., Montgomery M.K., Kostas S.A., Driver S.E., Mello C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391:806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 18
    • 84924842661 scopus 로고    scopus 로고
    • Nanopore single-molecule detection of circulating microRNAs
    • Gu L.Q., Wang Y. Nanopore single-molecule detection of circulating microRNAs. Methods Mol. Biol. 2013, 1024:255-268.
    • (2013) Methods Mol. Biol. , vol.1024 , pp. 255-268
    • Gu, L.Q.1    Wang, Y.2
  • 19
    • 84856239588 scopus 로고    scopus 로고
    • Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint
    • Gu S.G., Pak J., Guang S., Maniar J.M., Kennedy S., Fire A. Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint. Nat. Genet. 2012, 44:157-164.
    • (2012) Nat. Genet. , vol.44 , pp. 157-164
    • Gu, S.G.1    Pak, J.2    Guang, S.3    Maniar, J.M.4    Kennedy, S.5    Fire, A.6
  • 21
    • 84866953427 scopus 로고    scopus 로고
    • CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification
    • Hashimshony T., Wagner F., Sher N., Yanai I. CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. Cell Rep. 2012, 2:666-673.
    • (2012) Cell Rep. , vol.2 , pp. 666-673
    • Hashimshony, T.1    Wagner, F.2    Sher, N.3    Yanai, I.4
  • 22
    • 84867193062 scopus 로고    scopus 로고
    • Transgenerational defense induction and epigenetic inheritance in plants
    • Holeski L.M., Jander G., Agrawal A.A. Transgenerational defense induction and epigenetic inheritance in plants. Trends Ecol. Evol. 2012, 27:618-626.
    • (2012) Trends Ecol. Evol. , vol.27 , pp. 618-626
    • Holeski, L.M.1    Jander, G.2    Agrawal, A.A.3
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang da W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37:1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 25
    • 84886246973 scopus 로고    scopus 로고
    • The presence, role and clinical use of spermatozoal RNAs
    • Jodar M., et al. The presence, role and clinical use of spermatozoal RNAs. Hum. Reprod. Update 2013, 19:604-624.
    • (2013) Hum. Reprod. Update , vol.19 , pp. 604-624
    • Jodar, M.1
  • 26
    • 34250781054 scopus 로고    scopus 로고
    • Transgenerational response to nutrition, early life circumstances and longevity
    • Kaati G., Bygren L.O., Pembrey M., Sjöström M. Transgenerational response to nutrition, early life circumstances and longevity. Eur. J. Hum. Genet. 2007, 15:784-790.
    • (2007) Eur. J. Hum. Genet. , vol.15 , pp. 784-790
    • Kaati, G.1    Bygren, L.O.2    Pembrey, M.3    Sjöström, M.4
  • 27
  • 29
    • 84924846435 scopus 로고    scopus 로고
    • Functional analysis of exosomal microRNA in cell - cell communication research
    • Kosaka N., Yoshioka Y., Hagiwara K., Tominaga N., Ochiya T. Functional analysis of exosomal microRNA in cell - cell communication research. Methods Mol. Biol. 2013, 1024:1-10.
    • (2013) Methods Mol. Biol. , vol.1024 , pp. 1-10
    • Kosaka, N.1    Yoshioka, Y.2    Hagiwara, K.3    Tominaga, N.4    Ochiya, T.5
  • 30
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A., Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011, 39:D152-D157.
    • (2011) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 31
    • 84924839639 scopus 로고    scopus 로고
    • Identification and analysis of circulating exosomal microRNA in human body fluids
    • Lässer C. Identification and analysis of circulating exosomal microRNA in human body fluids. Methods Mol. Biol. 2013, 1024:109-128.
    • (2013) Methods Mol. Biol. , vol.1024 , pp. 109-128
    • Lässer, C.1
  • 32
    • 84883102590 scopus 로고    scopus 로고
    • NIH effort gambles on mysterious extracellular RNAs
    • Leslie M. NIH effort gambles on mysterious extracellular RNAs. Science 2013, 341:947.
    • (2013) Science , vol.341 , pp. 947
    • Leslie, M.1
  • 33
    • 84874988293 scopus 로고    scopus 로고
    • New roles for microRNAs in cross-species communication
    • Liang H., Zen K., Zhang J., Zhang C.Y., Chen X. New roles for microRNAs in cross-species communication. RNA Biol. 2013, 10:367-370.
    • (2013) RNA Biol. , vol.10 , pp. 367-370
    • Liang, H.1    Zen, K.2    Zhang, J.3    Zhang, C.Y.4    Chen, X.5
  • 34
    • 84875235105 scopus 로고    scopus 로고
    • Bridging the transgenerational gap with epigenetic memory
    • Lim J.P., Brunet A. Bridging the transgenerational gap with epigenetic memory. Trends Genet. 2013, 29:176-186.
    • (2013) Trends Genet. , vol.29 , pp. 176-186
    • Lim, J.P.1    Brunet, A.2
  • 35
    • 35548931470 scopus 로고    scopus 로고
    • Like father like son. A fresh review of the inheritance of acquired characteristics
    • Liu Y. Like father like son. A fresh review of the inheritance of acquired characteristics. EMBO Rep. 2007, 8:798-803.
    • (2007) EMBO Rep. , vol.8 , pp. 798-803
    • Liu, Y.1
  • 36
    • 84865608774 scopus 로고    scopus 로고
    • Darwin's Pangenesis and molecular medicine
    • Liu Y., Li X. Darwin's Pangenesis and molecular medicine. Trends Mol. Med. 2012, 18:506-508.
    • (2012) Trends Mol. Med. , vol.18 , pp. 506-508
    • Liu, Y.1    Li, X.2
  • 37
    • 84859199684 scopus 로고    scopus 로고
    • Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA
    • McCue A.D., Nuthikattu S., Reeder S.H., Slotkin R.K. Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet. 2012, 8:e1002474.
    • (2012) PLoS Genet. , vol.8
    • McCue, A.D.1    Nuthikattu, S.2    Reeder, S.H.3    Slotkin, R.K.4
  • 38
    • 84885171004 scopus 로고    scopus 로고
    • A new method for stranded whole transcriptome RNA-seq
    • Miller D.F., et al. A new method for stranded whole transcriptome RNA-seq. Methods 2013, 63:126-134.
    • (2013) Methods , vol.63 , pp. 126-134
    • Miller, D.F.1
  • 39
    • 84893959985 scopus 로고    scopus 로고
    • miRandola, (Last accessed on 15th, 2013)
    • miRandola Extracellular circulating microRNAs database (Last accessed on 15th, 2013). http://atlas.dmi.unict.it/mirandola/index.php.
    • Extracellular circulating microRNAs database
  • 40
    • 84893972229 scopus 로고    scopus 로고
    • miRBase, (Last accessed on 15th, 2013)
    • miRBase (Last accessed on 15th, 2013). http://www.mirbase.org.
  • 42
    • 84924845177 scopus 로고    scopus 로고
    • Analyzing the circulating microRNAs in exosomes/extracellular vesicles from serum or plasma by qRT-PCR
    • Moldovan L., Batte K., Wang Y., Wisler J., Piper M. Analyzing the circulating microRNAs in exosomes/extracellular vesicles from serum or plasma by qRT-PCR. Methods Mol. Biol. 2013, 1024:129-145.
    • (2013) Methods Mol. Biol. , vol.1024 , pp. 129-145
    • Moldovan, L.1    Batte, K.2    Wang, Y.3    Wisler, J.4    Piper, M.5
  • 43
    • 84880699689 scopus 로고    scopus 로고
    • Physiology is rocking the foundations of evolutionary biology
    • Noble D. Physiology is rocking the foundations of evolutionary biology. Exp. Physiol. 2013, 98:1235-1243.
    • (2013) Exp. Physiol. , vol.98 , pp. 1235-1243
    • Noble, D.1
  • 44
    • 84924847836 scopus 로고    scopus 로고
    • Analysis of microRNA niches: techniques to measure extracellular microRNA and intracellular microRNA in situ
    • Parikh V.N., Chan S.Y. Analysis of microRNA niches: techniques to measure extracellular microRNA and intracellular microRNA in situ. Methods Mol. Biol. 2013, 1024:157-172.
    • (2013) Methods Mol. Biol. , vol.1024 , pp. 157-172
    • Parikh, V.N.1    Chan, S.Y.2
  • 45
    • 78649929055 scopus 로고    scopus 로고
    • Male-line transgenerational responses in humans
    • Pembrey M.E. Male-line transgenerational responses in humans. Hum. Fertil. (Camb). 2010, 13:268-271.
    • (2010) Hum. Fertil. (Camb). , vol.13 , pp. 268-271
    • Pembrey, M.E.1
  • 46
    • 31344434726 scopus 로고    scopus 로고
    • Sex-specific, male-line transgenerational responses in humans
    • Pembrey M.E., et al. Sex-specific, male-line transgenerational responses in humans. Eur. J. Hum. Genet. 2006, 14:159-166.
    • (2006) Eur. J. Hum. Genet. , vol.14 , pp. 159-166
    • Pembrey, M.E.1
  • 47
    • 84869993173 scopus 로고    scopus 로고
    • Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data
    • Ragan C., Mowry B.J., Bauer D.C. Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data. Nucleic Acids Res. 2012, 40:7633-7643.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 7633-7643
    • Ragan, C.1    Mowry, B.J.2    Bauer, D.C.3
  • 48
    • 84863011341 scopus 로고    scopus 로고
    • Herbivory in the previous generation primes plants for enhanced insect resistance
    • Rasmann S., et al. Herbivory in the previous generation primes plants for enhanced insect resistance. Plant Physiol. 2012, 158:854-863.
    • (2012) Plant Physiol. , vol.158 , pp. 854-863
    • Rasmann, S.1
  • 50
    • 84867666610 scopus 로고    scopus 로고
    • MiRandola: extracellular circulating microRNAs database
    • Russo F., et al. miRandola: extracellular circulating microRNAs database. PLoS One 2012, 7:e47786.
    • (2012) PLoS One , vol.7
    • Russo, F.1
  • 51
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview - extensible visualization of microarray data
    • Saldanha A.J. Java Treeview - extensible visualization of microarray data. Bioinformatics 2004, 20:3246-3248.
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 52
    • 84881050679 scopus 로고    scopus 로고
    • Molecular biology. Is there social RNA?
    • Sarkies P., Miska E.A. Molecular biology. Is there social RNA?. Science 2013, 341:467-468.
    • (2013) Science , vol.341 , pp. 467-468
    • Sarkies, P.1    Miska, E.A.2
  • 53
    • 84867911356 scopus 로고    scopus 로고
    • Transgenerational inheritance of induced changes in the epigenetic state of chromatin in plants
    • Saze H. Transgenerational inheritance of induced changes in the epigenetic state of chromatin in plants. Genes Genet. Syst. 2012, 87:145-152.
    • (2012) Genes Genet. Syst. , vol.87 , pp. 145-152
    • Saze, H.1
  • 54
    • 84876102849 scopus 로고    scopus 로고
    • Serum-mediated transgenerational effects on sperm: evidence for lamarckian inheritance?
    • Seki Y. Serum-mediated transgenerational effects on sperm: evidence for lamarckian inheritance?. Hepatology 2013, 57:1663-1665.
    • (2013) Hepatology , vol.57 , pp. 1663-1665
    • Seki, Y.1
  • 55
    • 84861538794 scopus 로고    scopus 로고
    • Discovery of circulating microRNAs associated with human prostate cancer using a mouse model of disease
    • Selth L.A., et al. Discovery of circulating microRNAs associated with human prostate cancer using a mouse model of disease. Int. J. Cancer 2012, 131:652-661.
    • (2012) Int. J. Cancer , vol.131 , pp. 652-661
    • Selth, L.A.1
  • 56
    • 84876548498 scopus 로고    scopus 로고
    • Stability, delivery and functions of human sperm RNAs at fertilization
    • Sendler E., et al. Stability, delivery and functions of human sperm RNAs at fertilization. Nucleic Acids Res. 2013, 41:4104-4117.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 4104-4117
    • Sendler, E.1
  • 57
    • 84888865520 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance: focus on soma to germline information transfer
    • Sharma A. Transgenerational epigenetic inheritance: focus on soma to germline information transfer. Prog. Biophys. Mol. Biol. 2012, 113:439-446.
    • (2012) Prog. Biophys. Mol. Biol. , vol.113 , pp. 439-446
    • Sharma, A.1
  • 58
    • 84867915488 scopus 로고    scopus 로고
    • Extracellular miRNAs: the mystery of their origin and function
    • Turchinovich A., Weiz L., Burwinkel B. Extracellular miRNAs: the mystery of their origin and function. Trends Biochem. Sci. 2012, 37:460-465.
    • (2012) Trends Biochem. Sci. , vol.37 , pp. 460-465
    • Turchinovich, A.1    Weiz, L.2    Burwinkel, B.3
  • 60
    • 44449141843 scopus 로고    scopus 로고
    • RNA induction and inheritance of epigenetic cardiac hypertrophy in the mouse
    • Wagner K.D., et al. RNA induction and inheritance of epigenetic cardiac hypertrophy in the mouse. Dev. Cell 2008, 14:962-969.
    • (2008) Dev. Cell , vol.14 , pp. 962-969
    • Wagner, K.D.1
  • 61
    • 79953075510 scopus 로고    scopus 로고
    • Transgenerational neuroendocrine disruption of reproduction
    • Walker D.M., Gore A.C. Transgenerational neuroendocrine disruption of reproduction. Nat. Rev. Endocrinol. 2011, 7:197-207.
    • (2011) Nat. Rev. Endocrinol. , vol.7 , pp. 197-207
    • Walker, D.M.1    Gore, A.C.2
  • 62
    • 84870593063 scopus 로고    scopus 로고
    • Defining a new role of GW182 in maintaining miRNA stability
    • Yao B., La L.B., Chen Y.C., Chang L.J., Chan E.K. Defining a new role of GW182 in maintaining miRNA stability. EMBO Rep. 2012, 13:1102-1108.
    • (2012) EMBO Rep. , vol.13 , pp. 1102-1108
    • Yao, B.1    La, L.B.2    Chen, Y.C.3    Chang, L.J.4    Chan, E.K.5
  • 63
    • 84868646303 scopus 로고    scopus 로고
    • Multigenerational epigenetic adaptation of the hepatic wound-healing response
    • Zeybel M., et al. Multigenerational epigenetic adaptation of the hepatic wound-healing response. Nat. Med. 2012, 18:1369-1377.
    • (2012) Nat. Med. , vol.18 , pp. 1369-1377
    • Zeybel, M.1
  • 64
    • 84855502918 scopus 로고    scopus 로고
    • Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA
    • Zhang L., et al. Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell Res. 2011, 22:107-126.
    • (2011) Cell Res. , vol.22 , pp. 107-126
    • Zhang, L.1


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