A new method for stranded whole transcriptome RNA-seq

Methods

Volumn 63, Issue 2, 2013, Pages 126-134

  Miller, David F B ^a   Yan, Pearlly S ^b   Buechlein, Aaron ^c   Rodriguez, Benjamin A ^b   Yilmaz, Ayse S ^b   Goel, Shokhi ^a   Lin, Hai ^d   Collins Burow, Bridgette ^e   Rhodes, Lyndsay V ^e   Braun, Chris ^f   Pradeep, Sunila ^g   Rupaimoole, Rajesha ^g   Dalkilic, Mehmet ^f   Sood, Anil K ^g   Burow, Matthew E ^e   Tang, Haixu ^h   Huang, Tim H ⁱ   Liu, Yunlong ^d   Rusch, Douglas B ^c   Nephew, Kenneth P ^a  

^a Indiana University School of Medicine   (United States)

^b OSUCCC Illumina Core ^*  (United States)

^c INDIANA UNIVERSITY   (United States)

^d INDIANA UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^f INDIANA UNIVERSITY   (United States)

^g UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

^h Indiana University   (United States)

ⁱ UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

Author keywords

Duplex specific nuclease; Gene expression; RNA seq; Transcriptome

Indexed keywords

CISPLATIN; COMPLEMENTARY DNA; DUPLEX SPECIFIC NUCLEASE; LONG UNTRANSLATED RNA; MESSENGER RNA; MICRORNA; MITOCHONDRIAL RNA; NUCLEASE; PIWI INTERACTING RNA; RIBOSOME RNA; SMALL NUCLEOLAR RNA; TRANSCRIPTOME; UNCLASSIFIED DRUG;

ARTICLE; CANCER CELL CULTURE; GENE EXPRESSION; HUMAN; HUMAN CELL; METHODOLOGY; MOLECULAR BIOLOGY; MOLECULAR LIBRARY; NEXT GENERATION SEQUENCING; OVARY CANCER; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; RNA SPLICING; SINGLE NUCLEOTIDE POLYMORPHISM; TECHNOLOGY; TRANSCRIPTOMICS;

DSN; DUPLEX-SPECIFIC NUCLEASE; FLGRNA; FRAGMENTED LGRNA; GENE EXPRESSION; LARGE TOTAL RNA >200 NT; LGRNA; RNA-SEQ; SMALL TOTAL RNA <200 NT; SMRNA; TRANSCRIPTOME;

CELL LINE, TUMOR; GENE EXPRESSION PROFILING; GENE LIBRARY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MOLECULAR SEQUENCE ANNOTATION; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEIN ISOFORMS; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RIBONUCLEASES; RNA, MESSENGER; RNA, RIBOSOMAL; SEQUENCE ANALYSIS, RNA;

EID: 84885171004     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2013.03.023     Document Type: Article

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