Gene expression and DNA methylation alterations in chemically induced male sterility anthers in wheat (Triticum aestivum L.)

Acta Physiologiae Plantarum

Volumn 36, Issue 2, 2014, Pages 503-512

  Ba, Qingsong ^a   Zhang, Gaisheng ^a   Wang, Junsheng ^a   Niu, Na ^a   Ma, Shoucai ^a   Wang, Junwei ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

Chemical hybridizing agent; DNA methylation; Male sterility; Wheat

Indexed keywords

EID: 84893936298     PISSN: 01375881     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11738-013-1431-6     Document Type: Article

References (50)

1. Adugna A, Nanda GS, Singh K, Bains NS (2004) A comparison of cytoplasmic and chemically-induced male sterility systems for hybrid seed production in wheat (Triticum aestivum L.). Euphytica 135: 297-304.
2. Aubry C, Paven MCML, Chateigner-Boutin AL, Teulat-Merah B, Ricoult C, Peltier D, Jalouzot R, Limami AM (2003) A gene encoding a germin-like protein, identified by a cDNA-AFLP approach, is specifically expressed during germination of Phaseolus vulgaris. Planta 217: 466-475.
3. Bachem CWB, van der Hoeven RS, de Bruijn SM, Vreugdenhil D, Zabeau M, Visser RGF (1996) Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development. Plant J 9: 745-753.
4. Baisakh N, Subudhi PK, Parami NP (2006) cDNA-AFLP analysis reveals differential gene expression in response to salt stress in a halophyte Spartina alterniflora Loisel. Plant Sci 170: 1141-1149.
5. Baurens FC, Causse S, Legavre T (2008) Methylation-sensitive amplification polymorphism (MSAP) protocol to assess CpG and CpNpG methylation in the banana genome. Fruits 63: 117-123.
6. Cantu D, Vanzetti LS, Sumner A, Dubcovsky M, Matvienko M, Distelfeld A, Michelmore RW, Dubcovsky J (2010) Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics 11: 408.
7. Chakraborty K, Devakumar C (2006) Evaluation of chemical compounds for induction of male sterility in wheat (Triticum aestivum L.). Euphytica 147: 329-335.
8. Chen XQ, Ma Y, Chen F, Song WQ, Zhang L (2009) Analysis of DNA methylation patterns of PLBs derived from Cymbidium hybridium based on MSAP. Plant Cell Tiss Org 98: 67-77.
9. Ding J, Shen J, Mao H, Xie W, Li X, Zhang Q (2012a) RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice. Mol Plant 6: 1210-1216.
10. Ding JH, Lu Q, Ouyang YD, Mao HL, Zhang PB, Yao JL, Xu CG, Li XH, Xiao JH, Zhang QF (2012b) A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice. Proc Natl Acad Sci USA 109: 2654-2659.
11. Durrant WE, Rowland O, Piedras P, Hammond-Kosack KE, Jones JDG (2000) cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell 12: 963-977.
12. Fedoroff N (2000) Transposons and genome evolution in plants. Proc Natl Acad Sci USA 97: 7002-7007.
13. Finnegan EJ, Peacock WJ, Dennis ES (1996) Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc Natl Acad Sci USA 93: 8449-8454.
14. Forino LMC, Andreucci AC, Del Tredici I, Felici C, Giraldi E, Tagliasacchi AM (2003) DNA methylation of tapetum cells during microsporogenesis in Malus domestica Borkh. Israel J Plant Sci 51: 91-100.
15. Garcia-Aguilar M, Michaud C, Leblanc O, Grimanelli D (2010) Inactivation of a DNA methylation pathway in maize reproductive organs results in apomixis-like phenotypes. Plant Cell 22: 3249-3267.
16. Hanai LR, Floh EIS, Fungaro MHP, Santa-Catarina C, de Paula FM, Viana AM, Vieira MLC (2010) Methylation patterns revealed by MSAP profiling in genetically stable somatic embryogenic cultures of Ocotea catharinensis (Lauraceae). In Vitro Cell Dev Pl 46: 368-377.
17. Honys D, Twell D (2004) Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol 5(11): R85.
18. Hsu TW, Tsai WC, Wang DP, Lin S, Hsiao YY, Chen WH, Chen HH (2008) Differential gene expression analysis by cDNA-AFLP between flower buds of Phalaenopsis Hsiang Fei cv. H. F. and its somaclonal variant. Plant Sci 175: 415-422.
19. Ingelbrecht I, Vanhoudt H, Vanmontagu M, Depicker A (1994) Posttranscriptional silencing of reporter transgenes in tobacco correlates with DNA methylation. Proc Natl Acad Sci USA 91: 10502-10506.
20. Ishimaru K, Takada K, Watanabe S, Kamada H, Ezura H (2006) Stable male sterility induced by the expression of mutated melon ethylene receptor genes in Nicotiana tabacum. Plant Sci 171: 355-359.
21. Klindworth DL, Williams ND, Maan SS (2002) Chromosomal location of genetic male sterility genes in four mutants of hexaploid wheat. Crop Sci 42: 1447-1450.
22. Levterova V, Panaiotov S, Brankova N, Tankova K (2010) Typing of genetic markers involved in stress response by fluorescent cDNA-amplified fragment length polymorphism technique. Mol Biotechnol 45: 34-38.
23. Liu HL, Cui P, Zhan KH, Lin Q, Zhuo GY, Guo XL, Ding F, Yang WL, Liu DC, Hu SN, Yu J, Zhang AM (2011) Comparative analysis of mitochondrial genomes between a wheat K-type cytoplasmic male sterility (CMS) line and its maintainer line. BMC Genomics 12: 163-177.
24. Liu BS, Sun QX, Sun LZ, Gao QR, Xie CJ, Dou BD, Ni ZF, Wei YL, Zhang YC (2002) RAPD and ISSR markers of fertility restoring gene for Aegilops kotschyi cytoplasmic male sterility in wheat. Acta Bot Sin 44: 446-450.
25. Lu YL, Liu YX, Wang J, Cao MJ, Rong TZ (2010) Variation and patterns of DNA methylation in maize C-type CMS lines and their maintainers. J Plant Biochem Biotechnol 19: 43-50.
26. Mondego JMC, Simoes-Araujo JL, de Oliveira DE, Alves-Ferreira M (2003) A gene similar to bacterial translocase I identified by cDNA-AFLP is expressed during flower bud development of Arabidopsis thaliana. Plant Sci 164: 323-331.
27. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
28. Paris R, Dondini L, Zannini G, Bastia D, Marasco E, Gualdi V, Rizzi V, Piffanelli P, Mantovani V, Tartarini S (2012) dHPLC efficiency for semi-automated cDNA-AFLP analyses and fragment collection in the apple scab-resistance gene model. Planta 235: 1065-1080.
29. Parodi PC, Gaju MD (2009) Male sterility induced by the chemical hybridizing agent clofencet on wheat, Triticum aestivum and T. turgidum var. durum. Cienc Investig Agrar 36: 267-276.
30. Pickett AA, Galwey NW (1997) A further evaluation of hybrid wheat. Plant Var Seeds 10: 15-32.
31. Portis E, Acquadro A, Comino C, Lanteri S (2004) Analysis of DNA methylation during germination of pepper (Capsicum annuum L.) seeds using methylation-sensitive amplification polymorphism (MSAP). Plant Sci 166: 169-178.
32. Rao NVPRG, Mahajan V, Nagarajan S (2000) Effect of chemical hybridizing agent on floret opening and seed set in wheat (Triticum aestivum). Indian J Agric Sci 70: 689-690.
33. Ronemus MJ, Galbiati M, Ticknor C, Chen JC, Dellaporta SL (1996) Demethylation-induced developmental pleiotropy in Arabidopsis. Science 273: 654-657.
34. Sasakuma T, Ahmed TA, Tsujimoto H (2001) QTL analysis of fertility-restoration against cytoplasmic male sterility in wheat. Genes Genet Syst 76: 33-38.
35. Saze H, Scheid OM, Paszkowski J (2003) Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat Genet 34: 65-69.
36. Shan XH, Li YD, Liu XM, Wu Y, Zhang MZ, Guo WL, Liu B, Yuan YP (2012) Comparative analyses of genetic/epigenetic diversities and structures in a wild barley species (Hordeum brevisubulatum) using MSAP, SSAP and AFLP. Genet Mol Res 11: 2749-2759.
37. Singh SK, Chatrath R, Mishra B (2010) Perspective of hybrid wheat research: a review. Indian J Agric Sci 80: 1013-1027.
38. Song YP, Ma KF, Bo WH, Zhang ZY, Zhang DQ (2012) Sex-specific DNA methylation and gene expression in andromonoecious poplar. Plant Cell Rep 31: 1393-1405.
39. Takeda S, Paszkowski J (2006) DNA methylation and epigenetic inheritance during plant gametogenesis. Chromosoma 115: 27-35.
40. Wang L, Zhou BR, Wu LL, Guo BZ, Jiang TB (2011) Differentially expressed genes in Populus simonii × Populus nigra in response to NaCl stress using cDNA-AFLP. Plant Sci 180: 796-801.
41. Wu C, Sayos J, Nguyen K, Wang N, Coyle A, Biron C, Terhorst C (2000) Genomic organization and characterization of msap: the murine homologue of human XLP gene. FASEB J 14: 926.
42. Xiong LZ, Xu CG, Maroof MAS, Zhang QF (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261: 439-446.
43. Yan HH, Kikuchi S, Neumann P, Zhang WL, Wu YF, Chen F, Jiang JM (2010) Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice. Plant J 63: 353-365.
44. Zhang AM, Nie XL, Liu DC, Guo XL (2001) Advances of hybrid wheat breeding in China. Cereal Res Commun 29: 343-350.
45. Zhang GS, Chen RH, Ye JX, Wang JS, Niu N, Ma SC, Zhao JX, Zhu JC (2009) Differential proteomic analysis of anther proteins between cytoplasmic-nuclear male sterility line and its maintainer in wheat (Triticum aestivum L.). Progress Biochem Biophys 36: 431-440.
46. Zhang DS, Liang WQ, Yin CS, Zong J, Gu FW, Zhang DB (2010a) OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol 154: 149-162.
47. Zhang GS, Chen RH, Liu W, Ye JX (2010b) Mitochondrial proteomic analysis of cytoplasmic male sterility line and its maintainer in wheat (Triticum aestivum L.). Agric Sci China 9: 771-782.
48. Zhang ZH, Chen H, Huang XH, Xia R, Zhao QZ, Lai JB, Teng KL, Li Y, Liang LM, Du QS, Zhou XP, Guo HS, Xie Q (2011) BSCTVC2 attenuates the degradation of SAMDC1 to suppress DNA methylation-mediated gene silencing in Arabidopsis. Plant Cell 23: 273-288.
49. Zhou H, Liu QJ, Li J, Jiang DG, Zhou LY, Wu P, Lu S, Li F, Zhu LY, Liu ZL, Chen LT, Liu YG, Zhuang CX (2012) Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA. Cell Res 22: 649-660.
50. Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S (2007) Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 39: 61-69.