-
1
-
-
35348962397
-
Kaposi's sarcoma-associated herpesvirus
-
In: Knipe DM, Howley PM, editors, 5 ed. Philadelphia: Wolters Kluwer/Lippincott Williams and Wilkins
-
Ganem D (2007) Kaposi's sarcoma-associated herpesvirus. In: Knipe DM, Howley PM, editors. Fields Virology. 5 ed. Philadelphia: Wolters Kluwer/Lippincott Williams and Wilkins. pp. 2847-2888.
-
(2007)
Fields Virology
, pp. 2847-2888
-
-
Ganem, D.1
-
2
-
-
70049086022
-
The Dynamics of EBV Shedding Implicate a Central Role for Epithelial Cells in Amplifying Viral Output
-
Hadinoto V, Shapiro M, Sun CC, Thorley-Lawson DA, (2009) The Dynamics of EBV Shedding Implicate a Central Role for Epithelial Cells in Amplifying Viral Output. PLoS Pathog 5: e1000496.
-
(2009)
PLoS Pathog
, vol.5
-
-
Hadinoto, V.1
Shapiro, M.2
Sun, C.C.3
Thorley-Lawson, D.A.4
-
3
-
-
70350312825
-
Long-term administration of valacyclovir reduces the number of Epstein-Barr virus (EBV)-infected B cells but not the number of EBV DNA copies per B cell in healthy volunteers
-
Hoshino Y, Katano H, Zou P, Hohman P, Marques A, et al. (2009) Long-term administration of valacyclovir reduces the number of Epstein-Barr virus (EBV)-infected B cells but not the number of EBV DNA copies per B cell in healthy volunteers. J Virol 83: 11857-11861.
-
(2009)
J Virol
, vol.83
, pp. 11857-11861
-
-
Hoshino, Y.1
Katano, H.2
Zou, P.3
Hohman, P.4
Marques, A.5
-
4
-
-
78650059562
-
A new model of Epstein-Barr virus infection reveals an important role for early lytic viral protein expression in the development of lymphomas
-
Ma SD, Hegde S, Young KH, Sullivan R, Rajesh D, et al. (2011) A new model of Epstein-Barr virus infection reveals an important role for early lytic viral protein expression in the development of lymphomas. J Virol 85: 165-177.
-
(2011)
J Virol
, vol.85
, pp. 165-177
-
-
Ma, S.D.1
Hegde, S.2
Young, K.H.3
Sullivan, R.4
Rajesh, D.5
-
5
-
-
84864386364
-
An Epstein-Barr Virus (EBV) Mutant with Enhanced BZLF1 Expression Causes Lymphomas with Abortive Lytic EBV Infection in a Humanized Mouse Model
-
Ma SD, Yu X, Mertz JE, Gumperz JE, Reinheim E, et al. (2012) An Epstein-Barr Virus (EBV) Mutant with Enhanced BZLF1 Expression Causes Lymphomas with Abortive Lytic EBV Infection in a Humanized Mouse Model. J Virol 86: 7976-7987.
-
(2012)
J Virol
, vol.86
, pp. 7976-7987
-
-
Ma, S.D.1
Yu, X.2
Mertz, J.E.3
Gumperz, J.E.4
Reinheim, E.5
-
6
-
-
0032899921
-
Cellular Tropism and Viral Interleukin-6 Expression Distinguish Human Herpesvirus 8†Involvement in Kaposi's Sarcoma, Primary Effusion Lymphoma, and Multicentric Castleman's Disease
-
Staskus KA, Sun R, Miller G, Racz P, Jaslowski A, et al. (1999) Cellular Tropism and Viral Interleukin-6 Expression Distinguish Human Herpesvirus 8†Involvement in Kaposi's Sarcoma, Primary Effusion Lymphoma, and Multicentric Castleman's Disease. J Virol 73: 4181-4187.
-
(1999)
J Virol
, vol.73
, pp. 4181-4187
-
-
Staskus, K.A.1
Sun, R.2
Miller, G.3
Racz, P.4
Jaslowski, A.5
-
7
-
-
0029837991
-
Molecular mimicry of human cytokine and cytokine response pathway genes by KSHV
-
Moore PS, Boshoff C, Weiss RA, Chang Y, (1996) Molecular mimicry of human cytokine and cytokine response pathway genes by KSHV. Science 274: 1739-1744.
-
(1996)
Science
, vol.274
, pp. 1739-1744
-
-
Moore, P.S.1
Boshoff, C.2
Weiss, R.A.3
Chang, Y.4
-
8
-
-
0034614893
-
Viral G protein-coupled receptor and Kaposi's sarcoma: a model of paracrine neoplasia?
-
Cesarman E, Mesri EA, Gershengorn MC, (2000) Viral G protein-coupled receptor and Kaposi's sarcoma: a model of paracrine neoplasia? J Exp Med 191: 417-422.
-
(2000)
J Exp Med
, vol.191
, pp. 417-422
-
-
Cesarman, E.1
Mesri, E.A.2
Gershengorn, M.C.3
-
9
-
-
0033535532
-
Oral ganciclovir for patients with cytomegalovirus retinitis treated with a ganciclovir implant. Roche Ganciclovir Study Group
-
Martin DF, Kuppermann BD, Wolitz RA, Palestine AG, Li H, et al. (1999) Oral ganciclovir for patients with cytomegalovirus retinitis treated with a ganciclovir implant. Roche Ganciclovir Study Group. N Engl J Med 340: 1063-1070.
-
(1999)
N Engl J Med
, vol.340
, pp. 1063-1070
-
-
Martin, D.F.1
Kuppermann, B.D.2
Wolitz, R.A.3
Palestine, A.G.4
Li, H.5
-
10
-
-
33144473613
-
A Chromatin Insulator-Like Element in the Herpes Simplex Virus Type 1 Latency-Associated Transcript Region Binds CCCTC-Binding Factor and Displays Enhancer-Blocking and Silencing Activities
-
Amelio AL, McAnany PK, Bloom DC, (2006) A Chromatin Insulator-Like Element in the Herpes Simplex Virus Type 1 Latency-Associated Transcript Region Binds CCCTC-Binding Factor and Displays Enhancer-Blocking and Silencing Activities. J Virol 80: 2358-2368.
-
(2006)
J Virol
, vol.80
, pp. 2358-2368
-
-
Amelio, A.L.1
McAnany, P.K.2
Bloom, D.C.3
-
11
-
-
79956191128
-
Occupancy of chromatin organizers in the Epstein-Barr virus genome
-
Holdorf MM, Cooper SB, Yamamoto KR, Miranda JJ, (2011) Occupancy of chromatin organizers in the Epstein-Barr virus genome. Virology 415: 1-5.
-
(2011)
Virology
, vol.415
, pp. 1-5
-
-
Holdorf, M.M.1
Cooper, S.B.2
Yamamoto, K.R.3
Miranda, J.J.4
-
12
-
-
80052336129
-
Coordination of KSHV latent and lytic gene control by CTCF-cohesin mediated chromosome conformation
-
Kang H, Wiedmer A, Yuan Y, Robertson E, Lieberman PM, (2011) Coordination of KSHV latent and lytic gene control by CTCF-cohesin mediated chromosome conformation. PLoS Pathog 7: e1002140.
-
(2011)
PLoS Pathog
, vol.7
-
-
Kang, H.1
Wiedmer, A.2
Yuan, Y.3
Robertson, E.4
Lieberman, P.M.5
-
13
-
-
77949274530
-
Chromatin organization of gammaherpesvirus latent genomes
-
Tempera I, Lieberman PM, (2010) Chromatin organization of gammaherpesvirus latent genomes. Biochim Biophys Acta 1799: 236-245.
-
(2010)
Biochim Biophys Acta
, vol.1799
, pp. 236-245
-
-
Tempera, I.1
Lieberman, P.M.2
-
14
-
-
48949085110
-
Cohesin and CTCF: cooperating to control chromosome conformation?
-
Gause M, Schaaf CA, Dorsett D, (2008) Cohesin and CTCF: cooperating to control chromosome conformation? BioEssays 30: 715-718.
-
(2008)
BioEssays
, vol.30
, pp. 715-718
-
-
Gause, M.1
Schaaf, C.A.2
Dorsett, D.3
-
15
-
-
67549119096
-
CTCF: master weaver of the genome
-
Phillips JE, Corces VG, (2009) CTCF: master weaver of the genome. Cell 137: 1194-1211.
-
(2009)
Cell
, vol.137
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
16
-
-
33947201809
-
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
-
Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, et al. (2007) Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128: 1231-1245.
-
(2007)
Cell
, vol.128
, pp. 1231-1245
-
-
Kim, T.H.1
Abdullaev, Z.K.2
Smith, A.D.3
Ching, K.A.4
Loukinov, D.I.5
-
17
-
-
52449127383
-
Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development
-
Wan LB, Pan H, Hannenhalli S, Cheng Y, Ma J, et al. (2008) Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. Development 135: 2729-2738.
-
(2008)
Development
, vol.135
, pp. 2729-2738
-
-
Wan, L.B.1
Pan, H.2
Hannenhalli, S.3
Cheng, Y.4
Ma, J.5
-
18
-
-
34249848791
-
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
-
Xie X, Mikkelsen TS, Gnirke A, Lindblad-Toh K, Kellis M, et al. (2007) Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proc Natl Acad Sci U S A 104: 7145-7150.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 7145-7150
-
-
Xie, X.1
Mikkelsen, T.S.2
Gnirke, A.3
Lindblad-Toh, K.4
Kellis, M.5
-
19
-
-
0029929793
-
An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes
-
Filippova GN, Fagerlie S, Klenova EM, Myers C, Dehner Y, et al. (1996) An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes. Mol Cell Biol 16: 2802-2813.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 2802-2813
-
-
Filippova, G.N.1
Fagerlie, S.2
Klenova, E.M.3
Myers, C.4
Dehner, Y.5
-
20
-
-
0033529654
-
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
-
Bell AC, West AG, Felsenfeld G, (1999) The protein CTCF is required for the enhancer blocking activity of vertebrate insulators. Cell 98: 387-396.
-
(1999)
Cell
, vol.98
, pp. 387-396
-
-
Bell, A.C.1
West, A.G.2
Felsenfeld, G.3
-
21
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, et al. (2009) Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 19: 24-32.
-
(2009)
Genome Res
, vol.19
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
Roh, T.Y.4
Cui, K.5
-
22
-
-
84879208137
-
Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans
-
Dorsett D, Merkenschlager M, (2013) Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans. Curr Opin Cell Biol 25: 327-333.
-
(2013)
Curr Opin Cell Biol
, vol.25
, pp. 327-333
-
-
Dorsett, D.1
Merkenschlager, M.2
-
23
-
-
84876010302
-
Genome-wide control of RNA polymerase II activity by cohesin
-
Schaaf CA, Kwak H, Koenig A, Misulovin Z, Gohara DW, et al. (2013) Genome-wide control of RNA polymerase II activity by cohesin. PLoS Genet 9: e1003382.
-
(2013)
PLoS Genet
, vol.9
-
-
Schaaf, C.A.1
Kwak, H.2
Koenig, A.3
Misulovin, Z.4
Gohara, D.W.5
-
24
-
-
84866183349
-
Cohesins Repress Kaposi's Sarcoma-Associated Herpesvirus Immediate Early Gene Transcription during Latency
-
Chen HS, Wikramasinghe P, Showe L, Lieberman PM, (2012) Cohesins Repress Kaposi's Sarcoma-Associated Herpesvirus Immediate Early Gene Transcription during Latency. J Virol 86: 9454-9464.
-
(2012)
J Virol
, vol.86
, pp. 9454-9464
-
-
Chen, H.S.1
Wikramasinghe, P.2
Showe, L.3
Lieberman, P.M.4
-
25
-
-
66149123638
-
Cell cycle control of Kaposi's sarcoma-associated herpesvirus latency transcription by CTCF-cohesin interactions
-
Kang H, Lieberman PM, (2009) Cell cycle control of Kaposi's sarcoma-associated herpesvirus latency transcription by CTCF-cohesin interactions. J Virol 83: 6199-6210.
-
(2009)
J Virol
, vol.83
, pp. 6199-6210
-
-
Kang, H.1
Lieberman, P.M.2
-
26
-
-
39449111307
-
Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
-
Stedman W, Kang H, Lin S, Kissil JL, Bartolomei MS, et al. (2008) Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators. EMBO J 27: 654-666.
-
(2008)
EMBO J
, vol.27
, pp. 654-666
-
-
Stedman, W.1
Kang, H.2
Lin, S.3
Kissil, J.L.4
Bartolomei, M.S.5
-
27
-
-
79955754014
-
Generation of a doxycycline-inducible KSHV producer cell line of endothelial origin: maintenance of tight latency with efficient reactivation upon induction
-
Myoung J, Ganem D, (2011) Generation of a doxycycline-inducible KSHV producer cell line of endothelial origin: maintenance of tight latency with efficient reactivation upon induction. J Virol Methods 174: 12-21.
-
(2011)
J Virol Methods
, vol.174
, pp. 12-21
-
-
Myoung, J.1
Ganem, D.2
-
28
-
-
84866184336
-
Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus bacterial artificial chromosome clone
-
Brulois KF, Chang H, Lee AS, Ensser A, Wong LY, et al. (2012) Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus bacterial artificial chromosome clone. J Virol 86: 9708-9720.
-
(2012)
J Virol
, vol.86
, pp. 9708-9720
-
-
Brulois, K.F.1
Chang, H.2
Lee, A.S.3
Ensser, A.4
Wong, L.Y.5
-
29
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
30
-
-
60849117520
-
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
-
Nix DA, Courdy SJ, Boucher KM, (2008) Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks. BMC Bioinformatics 9: 523.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 523
-
-
Nix, D.A.1
Courdy, S.J.2
Boucher, K.M.3
-
31
-
-
84875634162
-
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
-
Thorvaldsdottir H, Robinson JT, Mesirov JP, (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14: 178-192.
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
32
-
-
84863703084
-
KSHV PAN RNA associates with demethylases UTX and JMJD3 to activate lytic replication through a physical interaction with the virus genome
-
Rossetto CC, Pari G, (2012) KSHV PAN RNA associates with demethylases UTX and JMJD3 to activate lytic replication through a physical interaction with the virus genome. PLoS Pathog 8: e1002680.
-
(2012)
PLoS Pathog
, vol.8
-
-
Rossetto, C.C.1
Pari, G.2
-
33
-
-
84876568821
-
CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization
-
Ziebarth JD, Bhattacharya A, Cui Y, (2013) CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization. Nucleic Acids Res 41: D188-D194.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Ziebarth, J.D.1
Bhattacharya, A.2
Cui, Y.3
-
34
-
-
77951836691
-
A CTCF-independent role for cohesin in tissue-specific transcription
-
Schmidt D, Schwalie PC, Ross-Innes CS, Hurtado A, Brown GD, et al. (2010) A CTCF-independent role for cohesin in tissue-specific transcription. Genome Res 20: 578-588.
-
(2010)
Genome Res
, vol.20
, pp. 578-588
-
-
Schmidt, D.1
Schwalie, P.C.2
Ross-Innes, C.S.3
Hurtado, A.4
Brown, G.D.5
-
35
-
-
46149113242
-
CTCF physically links cohesin to chromatin
-
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, et al. (2008) CTCF physically links cohesin to chromatin. Proceedings of the National Academy of Sciences 105: 8309-8314.
-
(2008)
Proceedings of the National Academy of Sciences
, vol.105
, pp. 8309-8314
-
-
Rubio, E.D.1
Reiss, D.J.2
Welcsh, P.L.3
Disteche, C.M.4
Filippova, G.N.5
-
36
-
-
39149121436
-
Cohesin mediates transcriptional insulation by CCCTC-binding factor
-
Wendt KS, Yoshida K, Itoh T, Bando M, Koch B, et al. (2008) Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451: 796-801.
-
(2008)
Nature
, vol.451
, pp. 796-801
-
-
Wendt, K.S.1
Yoshida, K.2
Itoh, T.3
Bando, M.4
Koch, B.5
-
37
-
-
67149098194
-
Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes
-
Blencowe BJ, Ahmad S, Lee LJ, (2009) Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes. Genes Dev 23: 1379-1386.
-
(2009)
Genes Dev
, vol.23
, pp. 1379-1386
-
-
Blencowe, B.J.1
Ahmad, S.2
Lee, L.J.3
-
38
-
-
84859619817
-
The ancient and evolving roles of cohesin in gene expression and DNA repair
-
Dorsett D, Strom L, (2012) The ancient and evolving roles of cohesin in gene expression and DNA repair. Curr Biol 22: R240-250.
-
(2012)
Curr Biol
, vol.22
-
-
Dorsett, D.1
Strom, L.2
-
39
-
-
80053985777
-
Cohesin selectively binds and regulates genes with paused RNA polymerase
-
Fay A, Misulovin Z, Li J, Schaaf CA, Gause M, et al. (2011) Cohesin selectively binds and regulates genes with paused RNA polymerase. Curr Biol 21: 1624-1634.
-
(2011)
Curr Biol
, vol.21
, pp. 1624-1634
-
-
Fay, A.1
Misulovin, Z.2
Li, J.3
Schaaf, C.A.4
Gause, M.5
-
40
-
-
77955267029
-
Positive regulation of c-Myc by cohesin is direct, and evolutionarily conserved
-
Rhodes JM, Bentley FK, Print CG, Dorsett D, Misulovin Z, et al. (2010) Positive regulation of c-Myc by cohesin is direct, and evolutionarily conserved. Dev Biol 344: 637-649.
-
(2010)
Dev Biol
, vol.344
, pp. 637-649
-
-
Rhodes, J.M.1
Bentley, F.K.2
Print, C.G.3
Dorsett, D.4
Misulovin, Z.5
-
41
-
-
10044224905
-
Lytic cycle gene regulation of Epstein-Barr virus
-
Amon W, Binne UK, Bryant H, Jenkins PJ, Karstegl CE, et al. (2004) Lytic cycle gene regulation of Epstein-Barr virus. J Virol 78: 13460-13469.
-
(2004)
J Virol
, vol.78
, pp. 13460-13469
-
-
Amon, W.1
Binne, U.K.2
Bryant, H.3
Jenkins, P.J.4
Karstegl, C.E.5
-
42
-
-
0023511780
-
Activation of herpes simplex virus 1 gamma 2 genes by viral DNA replication
-
Mavromara-Nazos P, Roizman B, (1987) Activation of herpes simplex virus 1 gamma 2 genes by viral DNA replication. Virology 161: 593-598.
-
(1987)
Virology
, vol.161
, pp. 593-598
-
-
Mavromara-Nazos, P.1
Roizman, B.2
-
43
-
-
0033895224
-
On the control of late gene expression in Kaposi's sarcoma-associated herpesvirus (human herpesvirus-8)
-
Chang J, Ganem D, (2000) On the control of late gene expression in Kaposi's sarcoma-associated herpesvirus (human herpesvirus-8). J Gen Virol 81: 2039-2047.
-
(2000)
J Gen Virol
, vol.81
, pp. 2039-2047
-
-
Chang, J.1
Ganem, D.2
-
44
-
-
84866164089
-
Negative elongation factor-mediated suppression of RNA polymerase II elongation of Kaposi's sarcoma-associated herpesvirus lytic gene expression
-
Toth Z, Brulois KF, Wong LY, Lee HR, Chung B, et al. (2012) Negative elongation factor-mediated suppression of RNA polymerase II elongation of Kaposi's sarcoma-associated herpesvirus lytic gene expression. J Virol 86: 9696-9707.
-
(2012)
J Virol
, vol.86
, pp. 9696-9707
-
-
Toth, Z.1
Brulois, K.F.2
Wong, L.Y.3
Lee, H.R.4
Chung, B.5
|