메뉴 건너뛰기




Volumn 415, Issue 1, 2011, Pages 1-5

Occupancy of chromatin organizers in the Epstein-Barr virus genome

Author keywords

Chromatin; Cohesin; CTCF; Epstein Barr virus; RNA Polymerase II; Transcription

Indexed keywords

COHESIN; DOUBLE STRANDED DNA; RNA POLYMERASE II; TRANSCRIPTION FACTOR CTCF;

EID: 79956191128     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2011.04.004     Document Type: Article
Times cited : (36)

References (51)
  • 1
    • 0024296735 scopus 로고
    • Prediction and demonstration of a novel Epstein-Barr virus nuclear antigen
    • Allday M.J., Crawford D.H., Griffin B.E. Prediction and demonstration of a novel Epstein-Barr virus nuclear antigen. Nucleic Acids Res. 1988, 16:4353-4367.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 4353-4367
    • Allday, M.J.1    Crawford, D.H.2    Griffin, B.E.3
  • 3
    • 0023235414 scopus 로고
    • Epstein-Barr virus gene expression in P3HR1-superinfected Raji cells
    • Biggin M., Bodescot M., Perricaudet M., Farrell P. Epstein-Barr virus gene expression in P3HR1-superinfected Raji cells. J. Virol. 1987, 61:3120-3132.
    • (1987) J. Virol. , vol.61 , pp. 3120-3132
    • Biggin, M.1    Bodescot, M.2    Perricaudet, M.3    Farrell, P.4
  • 4
    • 78049519411 scopus 로고    scopus 로고
    • Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide
    • Botta M., Haider S., Leung I.X., Lio P., Mozziconacci J. Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide. Mol. Syst. Biol. 2010, 6:426.
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 426
    • Botta, M.1    Haider, S.2    Leung, I.X.3    Lio, P.4    Mozziconacci, J.5
  • 6
    • 33744933185 scopus 로고    scopus 로고
    • Regulation of Epstein-Barr virus latency type by the chromatin boundary factor CTCF
    • Chau C.M., Zhang X.Y., McMahon S.B., Lieberman P.M. Regulation of Epstein-Barr virus latency type by the chromatin boundary factor CTCF. J. Virol. 2006, 80:5723-5732.
    • (2006) J. Virol. , vol.80 , pp. 5723-5732
    • Chau, C.M.1    Zhang, X.Y.2    McMahon, S.B.3    Lieberman, P.M.4
  • 7
    • 0026802153 scopus 로고
    • Transcription of BamHI-A region of the EBV genome in NPC tissues and B cells
    • Chen H.L., Lung M.M., Sham J.S., Choy D.T., Griffin B.E., Ng M.H. Transcription of BamHI-A region of the EBV genome in NPC tissues and B cells. Virology 1992, 191:193-201.
    • (1992) Virology , vol.191 , pp. 193-201
    • Chen, H.L.1    Lung, M.M.2    Sham, J.S.3    Choy, D.T.4    Griffin, B.E.5    Ng, M.H.6
  • 8
    • 34248347841 scopus 로고    scopus 로고
    • CTCF-dependent chromatin boundary element between the latency-associated transcript and ICP0 promoters in the herpes simplex virus type 1 genome
    • Chen Q., Lin L., Smith S., Huang J., Berger S.L., Zhou J. CTCF-dependent chromatin boundary element between the latency-associated transcript and ICP0 promoters in the herpes simplex virus type 1 genome. J. Virol. 2007, 81:5192-5201.
    • (2007) J. Virol. , vol.81 , pp. 5192-5201
    • Chen, Q.1    Lin, L.2    Smith, S.3    Huang, J.4    Berger, S.L.5    Zhou, J.6
  • 10
    • 0026331999 scopus 로고
    • B cell phenotype-dependent expression of the Epstein-Barr virus nuclear antigens EBNA-2 to EBNA-6: studies with somatic cell hybrids
    • Contreras-Brodin B.A., Anvret M., Imreh S., Altiok E., Klein G., Masucci M.G. B cell phenotype-dependent expression of the Epstein-Barr virus nuclear antigens EBNA-2 to EBNA-6: studies with somatic cell hybrids. J. Gen. Virol. 1991, 72(Pt 12):3025-3033.
    • (1991) J. Gen. Virol. , vol.72 , Issue.PART 12 , pp. 3025-3033
    • Contreras-Brodin, B.A.1    Anvret, M.2    Imreh, S.3    Altiok, E.4    Klein, G.5    Masucci, M.G.6
  • 13
    • 0029929793 scopus 로고    scopus 로고
    • An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes
    • Filippova G.N., Fagerlie S., Klenova E.M., Myers C., Dehner Y., Goodwin G., Neiman P.E., Collins S.J., Lobanenkov V.V. An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes. Mol. Cell. Biol. 1996, 16:2802-2813.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 2802-2813
    • Filippova, G.N.1    Fagerlie, S.2    Klenova, E.M.3    Myers, C.4    Dehner, Y.5    Goodwin, G.6    Neiman, P.E.7    Collins, S.J.8    Lobanenkov, V.V.9
  • 14
    • 0028932082 scopus 로고
    • An EBNA-1-dependent enhancer acts from a distance of 10 kilobase pairs to increase expression of the Epstein-Barr virus LMP gene
    • Gahn T.A., Sugden B. An EBNA-1-dependent enhancer acts from a distance of 10 kilobase pairs to increase expression of the Epstein-Barr virus LMP gene. J. Virol. 1995, 69:2633-2636.
    • (1995) J. Virol. , vol.69 , pp. 2633-2636
    • Gahn, T.A.1    Sugden, B.2
  • 17
    • 77649261872 scopus 로고    scopus 로고
    • Cell type specificity of chromatin organization mediated by CTCF and cohesin
    • Hou C., Dale R., Dean A. Cell type specificity of chromatin organization mediated by CTCF and cohesin. Proc. Natl. Acad. Sci. USA 2010, 107:3651-3656.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 3651-3656
    • Hou, C.1    Dale, R.2    Dean, A.3
  • 19
    • 34250010253 scopus 로고    scopus 로고
    • Epstein-Barr virus and its replication
    • Lippincott Williams & Wilkins, Philadelphia, D.M. Knipe, P.M. Howley (Eds.)
    • Kieff E.D., Rickinson A.B. Epstein-Barr virus and its replication. Fields Virology 2007, 2603-2654. Lippincott Williams & Wilkins, Philadelphia. fifth ed. D.M. Knipe, P.M. Howley (Eds.).
    • (2007) Fields Virology , pp. 2603-2654
    • Kieff, E.D.1    Rickinson, A.B.2
  • 21
    • 0026050432 scopus 로고
    • Transcriptional activity across the Epstein-Barr virus genome in Raji cells during latency and after induction of an abortive lytic cycle
    • Kirchner E.A., Bornkamm G.W., Polack A. Transcriptional activity across the Epstein-Barr virus genome in Raji cells during latency and after induction of an abortive lytic cycle. J. Gen. Virol. 1991, 72:2391-2398.
    • (1991) J. Gen. Virol. , vol.72 , pp. 2391-2398
    • Kirchner, E.A.1    Bornkamm, G.W.2    Polack, A.3
  • 22
    • 0019444924 scopus 로고
    • Two small RNAs encoded by Epstein-Barr virus and complexed with protein are precipitated by antibodies from patients with systemic lupus erythematosus
    • Lerner M.R., Andrews N.C., Miller G., Steitz J.A. Two small RNAs encoded by Epstein-Barr virus and complexed with protein are precipitated by antibodies from patients with systemic lupus erythematosus. Proc. Natl. Acad. Sci. USA 1981, 78:805-809.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 805-809
    • Lerner, M.R.1    Andrews, N.C.2    Miller, G.3    Steitz, J.A.4
  • 24
    • 77956645612 scopus 로고    scopus 로고
    • CTCF controls expression and chromatin architecture of the human major histocompatibility complex class II locus
    • Majumder P., Boss J.M. CTCF controls expression and chromatin architecture of the human major histocompatibility complex class II locus. Mol. Cell. Biol. 2010, 30:4211-4223.
    • (2010) Mol. Cell. Biol. , vol.30 , pp. 4211-4223
    • Majumder, P.1    Boss, J.M.2
  • 25
    • 42249105007 scopus 로고    scopus 로고
    • The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions
    • Majumder P., Gomez J.A., Chadwick B.P., Boss J.M. The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions. J. Exp. Med. 2008, 205:785-798.
    • (2008) J. Exp. Med. , vol.205 , pp. 785-798
    • Majumder, P.1    Gomez, J.A.2    Chadwick, B.P.3    Boss, J.M.4
  • 26
    • 77953021564 scopus 로고    scopus 로고
    • CTCF terminal segments are unstructured
    • Martinez S.R., Miranda J.L. CTCF terminal segments are unstructured. Protein Sci. 2010, 19:1110-1116.
    • (2010) Protein Sci. , vol.19 , pp. 1110-1116
    • Martinez, S.R.1    Miranda, J.L.2
  • 30
    • 0023867390 scopus 로고
    • A fifth Epstein-Barr virus nuclear protein (EBNA3C) is expressed in latently infected growth-transformed lymphocytes
    • Petti L., Sample J., Wang F., Kieff E. A fifth Epstein-Barr virus nuclear protein (EBNA3C) is expressed in latently infected growth-transformed lymphocytes. J. Virol. 1988, 62:1330-1338.
    • (1988) J. Virol. , vol.62 , pp. 1330-1338
    • Petti, L.1    Sample, J.2    Wang, F.3    Kieff, E.4
  • 31
    • 50549195640 scopus 로고
    • Cytology of Burkitt's tumour (African Lymphoma)
    • Pulvertaft J.V. Cytology of Burkitt's tumour (African Lymphoma). Lancet 1964, 1:238-240.
    • (1964) Lancet , vol.1 , pp. 238-240
    • Pulvertaft, J.V.1
  • 32
    • 0022818246 scopus 로고
    • Trans activation of an Epstein-Barr viral transcriptional enhancer by the Epstein-Barr viral nuclear antigen 1
    • Reisman D., Sugden B. trans activation of an Epstein-Barr viral transcriptional enhancer by the Epstein-Barr viral nuclear antigen 1. Mol. Cell. Biol. 1986, 6:3838-3846.
    • (1986) Mol. Cell. Biol. , vol.6 , pp. 3838-3846
    • Reisman, D.1    Sugden, B.2
  • 33
    • 0021887852 scopus 로고
    • A putative origin of replication of plasmids derived from Epstein-Barr virus is composed of two cis-acting components
    • Reisman D., Yates J., Sugden B. A putative origin of replication of plasmids derived from Epstein-Barr virus is composed of two cis-acting components. Mol. Cell. Biol. 1985, 5:1822-1832.
    • (1985) Mol. Cell. Biol. , vol.5 , pp. 1822-1832
    • Reisman, D.1    Yates, J.2    Sugden, B.3
  • 35
    • 0019770963 scopus 로고
    • Striking similarities are exhibited by two small Epstein-Barr virus-encoded ribonucleic acids and the adenovirus-associated ribonucleic acids VAI and VAII
    • Rosa M.D., Gottlieb E., Lerner M.R., Steitz J.A. Striking similarities are exhibited by two small Epstein-Barr virus-encoded ribonucleic acids and the adenovirus-associated ribonucleic acids VAI and VAII. Mol. Cell. Biol. 1981, 1:785-796.
    • (1981) Mol. Cell. Biol. , vol.1 , pp. 785-796
    • Rosa, M.D.1    Gottlieb, E.2    Lerner, M.R.3    Steitz, J.A.4
  • 36
    • 0028890514 scopus 로고
    • Structural analyses of the Epstein-Barr virus BamHI A transcripts
    • Sadler R.H., Raab-Traub N. Structural analyses of the Epstein-Barr virus BamHI A transcripts. J. Virol. 1995, 69:1132-1141.
    • (1995) J. Virol. , vol.69 , pp. 1132-1141
    • Sadler, R.H.1    Raab-Traub, N.2
  • 38
    • 0024535280 scopus 로고
    • Two related Epstein-Barr virus membrane proteins are encoded by separate genes
    • Sample J., Liebowitz D., Kieff E. Two related Epstein-Barr virus membrane proteins are encoded by separate genes. J. Virol. 1989, 63:933-937.
    • (1989) J. Virol. , vol.63 , pp. 933-937
    • Sample, J.1    Liebowitz, D.2    Kieff, E.3
  • 39
    • 0027308765 scopus 로고
    • Complex nature of the major viral polyadenylated transcripts in Epstein-Barr virus-associated tumors
    • Smith P.R., Gao Y., Karran L., Jones M.D., Snudden D., Griffin B.E. Complex nature of the major viral polyadenylated transcripts in Epstein-Barr virus-associated tumors. J. Virol. 1993, 67:3217-3225.
    • (1993) J. Virol. , vol.67 , pp. 3217-3225
    • Smith, P.R.1    Gao, Y.2    Karran, L.3    Jones, M.D.4    Snudden, D.5    Griffin, B.E.6
  • 40
    • 39449111307 scopus 로고    scopus 로고
    • Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
    • Stedman W., Kang H., Lin S., Kissil J.L., Bartolomei M.S., Lieberman P.M. Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators. EMBO J. 2008, 27:654-666.
    • (2008) EMBO J. , vol.27 , pp. 654-666
    • Stedman, W.1    Kang, H.2    Lin, S.3    Kissil, J.L.4    Bartolomei, M.S.5    Lieberman, P.M.6
  • 41
    • 0025271061 scopus 로고
    • The average number of molecules of Epstein-Barr nuclear antigen 1 per cell does not correlate with the average number of Epstein-Barr virus (EBV) DNA molecules per cell among different clones of EBV-immortalized cells
    • Sternas L., Middleton T., Sugden B. The average number of molecules of Epstein-Barr nuclear antigen 1 per cell does not correlate with the average number of Epstein-Barr virus (EBV) DNA molecules per cell among different clones of EBV-immortalized cells. J. Virol. 1990, 64:2407-2410.
    • (1990) J. Virol. , vol.64 , pp. 2407-2410
    • Sternas, L.1    Middleton, T.2    Sugden, B.3
  • 43
    • 0031870242 scopus 로고    scopus 로고
    • The Epstein-Barr virus major latent promoter Qp is constitutively active, hypomethylated, and methylation sensitive
    • Tao Q., Robertson K.D., Manns A., Hildesheim A., Ambinder R.F. The Epstein-Barr virus major latent promoter Qp is constitutively active, hypomethylated, and methylation sensitive. J. Virol. 1998, 72:7075-7083.
    • (1998) J. Virol. , vol.72 , pp. 7075-7083
    • Tao, Q.1    Robertson, K.D.2    Manns, A.3    Hildesheim, A.4    Ambinder, R.F.5
  • 46
    • 35548990188 scopus 로고    scopus 로고
    • We gather together: insulators and genome organization
    • Wallace J.A., Felsenfeld G. We gather together: insulators and genome organization. Curr. Opin. Genet. Dev. 2007, 17:400-407.
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 400-407
    • Wallace, J.A.1    Felsenfeld, G.2
  • 47
    • 0023130891 scopus 로고
    • A bicistronic Epstein-Barr virus mRNA encodes two nuclear proteins in latently infected, growth-transformed lymphocytes
    • Wang F., Petti L., Braun D., Seung S., Kieff E. A bicistronic Epstein-Barr virus mRNA encodes two nuclear proteins in latently infected, growth-transformed lymphocytes. J. Virol. 1987, 61:945-954.
    • (1987) J. Virol. , vol.61 , pp. 945-954
    • Wang, F.1    Petti, L.2    Braun, D.3    Seung, S.4    Kieff, E.5
  • 50
    • 0344622126 scopus 로고
    • A cis-acting element from the Epstein-Barr viral genome that permits stable replication of recombinant plasmids in latently infected cells
    • Yates J., Warren N., Reisman D., Sugden B. A cis-acting element from the Epstein-Barr viral genome that permits stable replication of recombinant plasmids in latently infected cells. Proc. Natl. Acad. Sci. USA 1984, 81:3806-3810.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 3806-3810
    • Yates, J.1    Warren, N.2    Reisman, D.3    Sugden, B.4
  • 51
    • 65649115253 scopus 로고    scopus 로고
    • CTCF and its protein partners: divide and rule?
    • Zlatanova J., Caiafa P. CTCF and its protein partners: divide and rule?. J. Cell Sci. 2009, 122:1275-1284.
    • (2009) J. Cell Sci. , vol.122 , pp. 1275-1284
    • Zlatanova, J.1    Caiafa, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.