Deep sequencing of the Camellia chekiangoleosa transcriptome revealed candidate genes for anthocyanin biosynthesis

Gene

Volumn 538, Issue 1, 2014, Pages 1-7

  Wang, Zhong wei ^a   Jiang, Cong ^a,b   Wen, Qiang ^c   Wang, Na ^a   Tao, Yuan yuan ^a   Xu, Li an ^a  

^a NANJING FORESTRY UNIVERSITY   (China)

^b NORTHWEST A F UNIVERSITY   (China)

^c Jiangxi Forestry Academy   (China)

Author keywords

Anthocyanin biosynthesis; Camellia chekiangoleosa; Transcriptome

Indexed keywords

ANTHOCYANIN; TITANIUM; TRANSCRIPTOME;

ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; CAMELLIA; CAMELLIA CHEKIANGOLEOSA; DNA LIBRARY; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION;

ARABIDOPSIS; CAMELLIA; CAMELLIA CHEKIANGOLEOSA;

ANTHOCYANIN BIOSYNTHESIS; CAMELLIA CHEKIANGOLEOSA; TRANSCRIPTOME;

ANTHOCYANINS; BASE SEQUENCE; CAMELLIA; EXPRESSED SEQUENCE TAGS; GENES, PLANT; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MOLECULAR SEQUENCE ANNOTATION; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS; TRANSCRIPTOME;

EID: 84893734515     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.01.035     Document Type: Article

References (45)

1. Aida R., Kishimoto S., Tanaka Y., Shibata M. Modification of flower color in torenia (Torenia fournieri Lind.) by genetic transformation. Plant Sci. 2000, 153:33-42.
2. Borevitz J.O., Xia Y., Blount J., Dixon R.A., Lamb C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell Online 2000, 12:2383-2393.
3. Boss P.K., Davies C., Robinson S.P. Expression of anthocyanin biosynthesis pathway genes in red and white grapes. Plant Mol. Biol. 1996, 32:565-569.
4. Broun P. Transcription factors as tools for metabolic engineering in plants. Curr. Opin. Plant Biol. 2004, 7:202.
5. Cone K.C., Cocciolone S.M., Burr F.A., Burr B. Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant. Plant Cell Online 1993, 5:1795-1805.
6. Conesa A., Götz S., García-Gómez J.M., Terol J., Talón M., Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676.
7. Farzad M., Griesbach R., Hammond J., Weiss M.R., Elmendorf H.G. Differential expression of three key anthocyanin biosynthetic genes in a color-changing flower, Viola cornuta cv. Yesterday, today and tomorrow. Plant Sci. 2003, 165:1333-1342.
8. Fukasawa-Akada T., Kung S., Watson J.C. Phenylalanine ammonia-lyase gene structure, expression, and evolution in Nicotiana. Plant Mol. Biol. 1996, 30:711-722.
9. Hasegawa H., Fukasawa-Akada T., Okuno T., Niizeki M., Suzuki M. Anthocyanin accumulation and related gene expression in Japanese parsley (Oenanthe stolonifera, DC.) induced by low temperature. J. Plant Physiol. 2001, 158:71-78.
10. Holton T.A., Cornish E.C. Genetics and biochemistry of anthocyanin biosynthesis. Plant Cell 1995, 7:1071.
11. Itoh Y., Higeta D., Suzuki A., Yoshida H., Ozeki Y. Excision of transposable elements from the chalcone isomerase and dihydroflavonol 4-reductase genes may contribute to the variegation of the yellow-flowered carnation (Dianthus caryophyllus). Plant Cell Physiol. 2002, 43:578-585.
12. Jiang C., Wen Q., Chen Y., Xu L., Huang M. Efficient extraction of RNA from various Camellia species rich in secondary metabolites for deep transcriptome sequencing and gene expression analysis. Afr. J. Biotechnol. 2011, 10:16769-16773.
13. Jin H., et al. Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis. EMBO J. 2000, 19:6150-6161.
14. Kim S.H., Lee J.R., Hong S.T., Yoo Y.K., An G., Kim S.R. Molecular cloning and analysis of anthocyanin biosynthesis genes preferentially expressed in apple skin. Plant Sci. 2003, 165:403-413.
15. Kobayashi H., Oikawa Y., Koiwa H., Yamamura S. Flower-specific gene expression directed by the promoter of a chalcone synthase gene from Gentiana triflora in Petunia hybrida. Plant Sci. 1998, 131:173-180.
16. Koes R.E., Quattrocchio F., Mol J.N. The flavonoid biosynthetic pathway in plants: function and evolution. BioEssays 1994, 16:123-132.
17. Lee C.-P., Yen G.-C. Antioxidant activity and bioactive compounds of tea seed (Camellia oleifera Abel.) oil. J. Agric. Food Chem. 2006, 54:779-784.
18. Lu Q.N., Yang Q. cDNA cloning and expression of anthocyanin biosynthetic genes in wild potato (Solanum pinnatisectum). Afr. J. Biotechnol. 2009, 5:811-818.
19. Ludwig S.R., Wessler S.R. Maize R gene family: tissue-specific helix-loop-helix proteins. Cell (Cambridge) 1990, 62:849-851.
20. Martin C., Prescott A., Mackay S., Bartlett J., Vrijlandt E. Control of anthocyanin biosynthesis in flowers of Antirrhinum majus. Plant J. 1991, 1:37-49.
21. McKhann H.I., Hirsch A.M. Isolation of chalcone synthase and chalcone isomerase cDNAs from alfalfa (Medicago sativa L.): highest transcript levels occur in young roots and root tips. Plant Mol. Biol. 1994, 24:767-777.
22. Mol J., Cornish E., Mason J., Koes R. Novel coloured flowers. Curr. Opin. Biotechnol. 1999, 10:198-201.
23. Mol J., Grotewold E., Koes R. How genes paint flowers and seeds. Trends Plant Sci. 1998, 3:212-217.
24. Mol J., Jenkins G., Schäfer E., Weiss D., Walbot D.V. Signal perception, transduction, and gene expression involved in anthocyanin biosynthesis. Crit. Rev. Plant Sci. 1996, 15:525-557.
25. Nakatsuka A., Mizuta D., Kii Y., Miyajima I., Kobayashi N. Isolation and expression analysis of flavonoid biosynthesis genes in evergreen azalea. Sci. Hortic. 2008, 118:314-320.
26. Nakatsuka A., Yamagishi M., Nakano M., Tasaki K., Kobayashi N. Light-induced expression of basic helix-loop-helix genes involved in anthocyanin biosynthesis in flowers and leaves of Asiatic hybrid lily. Sci. Hortic. 2009, 121:84-91.
27. Nakatsuka T., Nishihara M., Mishiba K., Yamamura S. Temporal expression of flavonoid biosynthesis-related genes regulates flower pigmentation in gentian plants. Plant Sci. 2005, 168:1309-1318.
28. Nakatsuka T., Nishihara M., Mishiba K., Yamamura S. Two different mutations are involved in the formation of white-flowered gentian plants. Plant Sci. 2005, 169:949-958.
29. Nishihara M., Nakatsuka T., Yamamura S. Flavonoid components and flower color change in transgenic tobacco plants by suppression of chalcone isomerase gene. FEBS Lett. 2005, 579:6074-6078.
30. Nyegaard Kristiansen K., Rohde W. Structure of the Hordeum vulgare gene encoding dihydroflavonol-4-reductase and molecular analysis of ant18 mutants blocked in flavonoid synthesis. Mol. Gen. Genet. 1991, 230:49-59.
31. Ogata H., Goto S., Sato K., Fujibuchi W., Bono H., Kanehisa M. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 1999, 27:29-34.
32. Palaniswamy S.K., James S., Sun H., Lamb R.S., Davuluri R.V., Grotewold E. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol. 2006, 140:818-829.
33. Pang Y., et al. Characterization and expression of chalcone synthase gene from Ginkgo biloba. Plant Sci. 2005, 168:1525-1531.
34. Rosati C., et al. Engineering of flower color in forsythia by expression of two independently-transformed dihydroflavonol 4-reductase and anthocyanidin synthase genes of flavonoid pathway. Mol. Breed. 2003, 12:197-208.
35. Shi C.Y., et al. Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics 2011, 12:131.
36. Takeuchi A., Matsumoto S., Hayatsu M. Chalcone synthase from Camellia sinensis: isolation of the cDNAs and the organ-specific and sugar-responsive expression of the genes. Plant Cell Physiol. 1994, 35:1011.
37. Tanaka Y., Tsuda S., Kusumi T. Metabolic engineering to modify flower color. Plant Cell Physiol. 1998, 39:1119.
38. Van der Krol A.R., et al. An anti-sense chalcone synthase gene in transgenic plants inhibits flower pigmentation. Nature 1988, 333:866-869.
39. van Tunen A.J., Mur L.A., Recourt K., Gerats A., Mol J. Regulation and manipulation of flavonoid gene expression in anthers of petunia: the molecular basis of the Po mutation. Plant Cell Online 1991, 3:39-48.
40. Walter M.H. The induction of phenylpropanoid biosynthetic enzymes by ultraviolet light or fungal elicitor in cultured parsley cells is overriden by a heat-shock treatment. Planta 1989, 177:1-8.
41. Wang Y., Gao L., Shan Y., Liu Y., Tian Y., Xia T. Influence of shade on flavonoid biosynthesis in tea (Camellia sinensis (L.) O. Kuntze). Sci. Hortic. 2012, 141:7-16.
42. Winkel-Shirley B. Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 2001, 126:485-493.
43. Ye J., et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 2006, 34:W293-W297.
44. Yang J.B., Tian X., Li D.Z., Guo Z.H. Molecular composition and evolution of the chalcone synthase (CHS) gene family in five species of Camellia (Theaceae). Acta Bot. Sin. 2003, 45(006):659-666.
45. Zheng W.J. Angiospermae. China Sylva 2004, vol. 1:3034-3060. China Forestry Publishing House, Beijing, China. 4th ed. H.C. Zhang, X.Y. Liu (Eds.).