Comparative biology and expression of TENP, an egg protein related to the bacterial permeability-increasing family of proteins

Gene

Volumn 538, Issue 1, 2014, Pages 99-108

  Whenham, Natasha ^a   Wilson, Peter W ^a   Bain, Maureen M ^b   Stevenson, Lynn ^b   Dunn, Ian C ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

Antimicrobial protein; Avian; Chicken; Oviduct; PLUNC

Indexed keywords

ANTIMICROBIAL PROTEIN; AVIAN; CHICKEN; OVIDUCT; PLUNC;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHICK EMBRYO; FEMALE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GONADAL STEROID HORMONES; MOLECULAR SEQUENCE DATA; NERVE TISSUE PROTEINS; ORGAN SPECIFICITY; OVIDUCTS; POULTRY; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

EID: 84893728741     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.12.065     Document Type: Article

References (47)

1. Beamer L.J., Fischer D., Eisenberg D. Detecting distant relatives of mammalian LPS-binding and lipid transport proteins. Protein Sci. 1998, 7(7):1643-1646.
2. Bedrani L., et al. Systemic administration of lipopolysaccharide in laying hens stimulates antimicrobial properties of egg white against Staphylococcus aureus. Vet. Immunol. Immunopathol. 2013, 152(3-4):225-236.
3. Bendtsen J.D., et al. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 2004, 340(4):783-795.
4. Bingle C.D., Craven C.J. PLUNC: a novel family of candidate host defence proteins expressed in the upper airways and nasopharynx. Hum. Mol. Genet. 2002, 11(8):937-943.
5. Bingle C.D., Craven C.J. Meet the relatives: a family of BPI- and LBP-related proteins. Trends Immunol. 2004, 25(2):53-55.
6. Cha R.S., Thilly W.G. Specificity, efficiency, and fidelity of PCR. PCR Methods Appl. 1993, 3(3):S18-S29.
7. Chiang S.C., et al. Identification and characterisation of the BPI/LBP/PLUNC-like gene repertoire in chickens reveals the absence of a LBP gene. Dev. Comp. Immunol. 2011, 35(3):285-295.
8. Chicken (Gallus gallus) Genome Browser Gateway (23/08/, Available from). http://genome.ucsc.edu/.
9. Cottrez F., et al. Quantitative PCR - validation of the use of a multispecific internal control. Nucleic Acids Res. 1994, 22(13):2712-2713.
10. D'Ambrosio C., et al. Exploring the chicken egg white proteome with combinatorial peptide ligand libraries. J. Proteome Res. 2008, 7(8):3461-3474.
11. Dunn I.C., et al. Regulation of chicken gonadotropin-releasing hormone-I mRNA in incubating, nest-deprived and laying Bantam hens. Neuroendocrinology 1996, 63(6):504-513.
12. Ensembl Genome Browser (23/08/, Available from). http://www.ensembl.org.
13. Ensembl Pre-release Genome Browser (23/08/, Available from). http://pre.ensembl.org.
14. Farinazzo A., et al. Chicken egg yolk cytoplasmic proteome, mined via combinatorial peptide ligand libraries. J. Chromatogr. A 2009, 1216(8):1241-1252.
15. Felsenstein J. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 1985, 39(4):783-791.
16. Gautron J., et al. Ovocalyxin-36 and other LBP/BPI/PLUNC-like proteins as molecular actors of the mechanisms of the avian egg natural defences. Biochem. Soc. Trans. 2011, 39:971-976.
17. Gong D., et al. Gallin; an antimicrobial peptide member of a new avian defensin family, the ovodefensins, has been subject to recent gene duplication. BMC Immunol. 2010, 11. (p. Article No.: 12).
18. Guerin-Dubiard C., et al. Proteomic analysis of hen egg white. J. Agric. Food Chem. 2006, 54(11):3901-3910.
19. Kent W.J. BLAT- the BLAST-like alignment tool. Genome Res. 2002, 12(4):656-664.
20. Kochetov A.V., et al. The role of alternative translation start sites in the generation of human protein diversity. Mol. Gen. Genomics. 2005, 273(6):491-496.
21. Kong Q., et al. Proteomic analysis of purified coronavirus infectious bronchitis virus particles. Proteome Sci. 2010, 8.
22. Kovacs-Nolan J., Phillips M., Mine Y. Advances in the value of eggs and egg components for human health. J. Agric. Food Chem. 2005, 53(22):8421-8431.
23. Kozak M. Initiation of translation in prokaryotes and eukaryotes. Gene 1999, 234(2):187-208.
24. Kunnas T.A., et al. Induction of avidin messenger-ribonucleic-acid in the chick oviduct by progesterone and other steroids. Endocrinology 1992, 130(6):3421-3426.
25. Longsworth L.G., Cannan R.K., MacInnes D.A. An electrophoretic study of the proteins of egg white. J. Am. Chem. Soc. 1940, 62:2580-2590.
26. Maehashi K., et al. Primary structure of potential allergenic proteins in emu (Dromaius novaehollandiae) egg white. J. Agric. Food Chem. 2010, 58(23):12530-12536.
27. Mann K. The chicken egg white proteome. Proteomics 2007, 7(19):3558-3568.
28. Mann K. Proteomic analysis of the chicken egg vitelline membrane. Proteomics 2008, 8(11):2322-2332.
29. Mann K., Mann M. The chicken egg yolk plasma and granule proteomes. Proteomics 2008, 8(1):178-191.
30. Mann K., Macek B., Olsen J.V. Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer. Proteomics 2006, 6(13):3801-3810.
31. Mann K., et al. Identification of new chicken egg proteins by mass spectrometry-based proteomic analysis. Worlds Poult. Sci. J. 2008, 64(2):209-218.
32. MATCH (23/08/, Available from). http://www.gene-regulation.com.
33. McDerment N.A., et al. Identification of novel candidate genes for follicle selection in the broiler breeder ovary. BMC Genomics 2012, 13.
34. McKnight G.S. Induction of ovalbumin and conalbumin messenger-RNA by estrogen and progesterone in chick oviduct explant cultures. Cell 1978, 14(2):403-413.
35. Mulero J.J., et al. Three new human members of the lipid transfer/lipopolysaccharide binding protein family (LT/LBP). Immunogenetics 2002, 54(5):293-300.
36. Muramatsu T., Hiramatsu H., Okumura J. Ovalbumin messenger-RNA in the magnum of laying hens changes during egg formation cycle. Br. Poult. Sci. 1994, 35(3):457-461.
37. Pelle R., Murphy N.B. Northern hybridization - rapid and simple electrophoretic conditions. Nucleic Acids Res. 1993, 21(11):2783-2784.
38. Primer3 (23/08/, Available from). http://frodo.wi.mit.edu/primer3/.
39. Reese M.G., et al. Improved splice site detection in Genie. J. Comput. Biol. 1997, 4(3):311-323.
40. Rogozin I.B., et al. Presence of ATG triplets in 5 ' untranslated regions of eukaryotic cDNAs correlates with 'weak' context of the start codon. Bioinformatics 2001, 17(10):890-900.
41. Saitou N., Nei M. The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4(4):406-425.
42. Schultz H., et al. The endotoxin-binding bactericidal/permeability-increasing protein (BPI): a target antigen of autoantibodies. J. Leukoc. Biol. 2001, 69(4):505-512.
43. Staden R. The Staden sequence analysis package. Mol. Biotechnol. 1996, 5(3):233-241.
44. Tamura K., et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28(10):2731-2739.
45. Wellman-Labadie O., Picman J., Hincke M.T. Avian antimicrobial proteins: structure, distribution and activity. Worlds Poult. Sci. J. 2007, 63(3):421-438.
46. Yan R.T., Wang S.Z. Identification and characterization of tenp, a gene transiently expressed before overt cell differentiation during neurogenesis. J. Neurobiol. 1998, 34(4):319-328.
47. Zuckerkandl E., Pauling L. Evolutionary Divergence and Convergence in Proteins 1965, 97-166.