메뉴 건너뛰기




Volumn 14, Issue 1, 2014, Pages

A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement

Author keywords

Disease resistance; Invasive species; Metabolomics; Proteomics; Rhizome; Rice; Rice blast; Transcriptomics

Indexed keywords

TRANSCRIPTOME;

EID: 84893701507     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-14-46     Document Type: Article
Times cited : (39)

References (104)
  • 1
    • 0242268049 scopus 로고    scopus 로고
    • Productivity improvements in rice
    • Khush G. Productivity improvements in rice. Nutr Rev 2003, 61(6 Pt 2):S114-S116.
    • (2003) Nutr Rev , vol.61 , Issue.6 PART 2
    • Khush, G.1
  • 2
    • 0031239602 scopus 로고    scopus 로고
    • Alien introgression in rice
    • Brar DS, Khush GS. Alien introgression in rice. Plant Mol Biol 1997, 35(1-2):35-47.
    • (1997) Plant Mol Biol , vol.35 , Issue.1-2 , pp. 35-47
    • Brar, D.S.1    Khush, G.S.2
  • 3
    • 24344439443 scopus 로고    scopus 로고
    • The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species
    • 10.1007/s11103-004-6237-x, 16217601
    • Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, et al. The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol 2005, 59(1):53-62. 10.1007/s11103-004-6237-x, 16217601.
    • (2005) Plant Mol Biol , vol.59 , Issue.1 , pp. 53-62
    • Wing, R.A.1    Ammiraju, J.S.2    Luo, M.3    Kim, H.4    Yu, Y.5    Kudrna, D.6    Goicoechea, J.L.7    Wang, W.8    Nelson, W.9    Rao, K.10
  • 4
    • 0003047987 scopus 로고    scopus 로고
    • Inheritance of the rhizomatous trait in hybrids of Oryza longistaminata Chev. et Roehr. and O. sativa L
    • Maekawa M, Inukai T, Rikiishi K, Matsuura T, Noda K. Inheritance of the rhizomatous trait in hybrids of Oryza longistaminata Chev. et Roehr. and O. sativa L. SABRAO J Breed Genet 1998, 30:69-72.
    • (1998) SABRAO J Breed Genet , vol.30 , pp. 69-72
    • Maekawa, M.1    Inukai, T.2    Rikiishi, K.3    Matsuura, T.4    Noda, K.5
  • 6
    • 78650038997 scopus 로고    scopus 로고
    • Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing
    • 10.1186/1471-2164-11-705, 3016420, 21159186
    • Yang H, Hu L, Hurek T, Reinhold-Hurek B. Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing. BMC Genomics 2010, 11:705. 10.1186/1471-2164-11-705, 3016420, 21159186.
    • (2010) BMC Genomics , vol.11 , pp. 705
    • Yang, H.1    Hu, L.2    Hurek, T.3    Reinhold-Hurek, B.4
  • 7
    • 0007263597 scopus 로고
    • A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21
    • 10.1126/science.270.5243.1804, 8525370
    • Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, Gardner J, Wang B, Zhai WX, Zhu LH, et al. A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 1995, 270(5243):1804-1806. 10.1126/science.270.5243.1804, 8525370.
    • (1995) Science , vol.270 , Issue.5243 , pp. 1804-1806
    • Song, W.Y.1    Wang, G.L.2    Chen, L.L.3    Kim, H.S.4    Pi, L.Y.5    Holsten, T.6    Gardner, J.7    Wang, B.8    Zhai, W.X.9    Zhu, L.H.10
  • 8
    • 11244313848 scopus 로고    scopus 로고
    • Quantitative trait loci controlling phenotypes related to the perennial versus annual habit in wild relatives of maize
    • 10.1007/s00122-004-1778-6, 15338134
    • Westerbergh A, Doebley J. Quantitative trait loci controlling phenotypes related to the perennial versus annual habit in wild relatives of maize. Theor Appl Genet 2004, 109(7):1544-1553. 10.1007/s00122-004-1778-6, 15338134.
    • (2004) Theor Appl Genet , vol.109 , Issue.7 , pp. 1544-1553
    • Westerbergh, A.1    Doebley, J.2
  • 10
    • 72449187566 scopus 로고    scopus 로고
    • QTL analysis for hybrid sterility and plant height in interspecific populations derived from a wild rice relative, Oryza longistaminata
    • Chen ZW, Hu FY, Xu P, Li J, Deng XN, Zhou JW, Li F, Chen SN, Tao DY. QTL analysis for hybrid sterility and plant height in interspecific populations derived from a wild rice relative, Oryza longistaminata. Breed Sci 2009, 59(4):441-445.
    • (2009) Breed Sci , vol.59 , Issue.4 , pp. 441-445
    • Chen, Z.W.1    Hu, F.Y.2    Xu, P.3    Li, J.4    Deng, X.N.5    Zhou, J.W.6    Li, F.7    Chen, S.N.8    Tao, D.Y.9
  • 11
    • 84866104936 scopus 로고    scopus 로고
    • A new gene controlling hybrid sterility between Oryza sativa and Oryza longistaminata
    • Zhao JY, Li J, Xu P, Zhou JW, Hu FY, Deng XN, Deng W, Tao DY. A new gene controlling hybrid sterility between Oryza sativa and Oryza longistaminata. Euphytica 2012, 187(3):339-344.
    • (2012) Euphytica , vol.187 , Issue.3 , pp. 339-344
    • Zhao, J.Y.1    Li, J.2    Xu, P.3    Zhou, J.W.4    Hu, F.Y.5    Deng, X.N.6    Deng, W.7    Tao, D.Y.8
  • 12
    • 0029072741 scopus 로고
    • The weediness of wild plants - molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum-Halepense (L) Pers
    • 10.1073/pnas.92.13.6127, 41655, 11607551
    • Paterson AH, Schertz KF, Lin YR, Liu SC, Chang YL. The weediness of wild plants - molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum-Halepense (L) Pers. Proc Natl Acad Sci U S A 1995, 92(13):6127-6131. 10.1073/pnas.92.13.6127, 41655, 11607551.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , Issue.13 , pp. 6127-6131
    • Paterson, A.H.1    Schertz, K.F.2    Lin, Y.R.3    Liu, S.C.4    Chang, Y.L.5
  • 13
    • 33751114156 scopus 로고    scopus 로고
    • Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expression
    • 10.1104/pp.106.082891, 1630734, 16998090
    • Jang CS, Kamps TL, Skinner DN, Schulze SR, Vencill WK, Paterson AH. Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expression. Plant Physiol 2006, 142(3):1148-1159. 10.1104/pp.106.082891, 1630734, 16998090.
    • (2006) Plant Physiol , vol.142 , Issue.3 , pp. 1148-1159
    • Jang, C.S.1    Kamps, T.L.2    Skinner, D.N.3    Schulze, S.R.4    Vencill, W.K.5    Paterson, A.H.6
  • 14
    • 60549108881 scopus 로고    scopus 로고
    • Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype
    • 10.1038/hdy.2008.119, 19002204
    • Jang CS, Kamps TL, Tang H, Bowers JE, Lemke C, Paterson AH. Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype. Heredity (Edinb) 2009, 102(3):266-273. 10.1038/hdy.2008.119, 19002204.
    • (2009) Heredity (Edinb) , vol.102 , Issue.3 , pp. 266-273
    • Jang, C.S.1    Kamps, T.L.2    Tang, H.3    Bowers, J.E.4    Lemke, C.5    Paterson, A.H.6
  • 15
    • 74249103956 scopus 로고    scopus 로고
    • Identification of genes related to the development of bamboo rhizome bud
    • 10.1093/jxb/erp334, 2803224, 19965904
    • Wang KH, Peng HZ, Lin EP, Jin QY, Hua XQ, Yao S, Bian HW, Han N, Pan JW, Wang JH, et al. Identification of genes related to the development of bamboo rhizome bud. J Exp Bot 2010, 61(2):551-561. 10.1093/jxb/erp334, 2803224, 19965904.
    • (2010) J Exp Bot , vol.61 , Issue.2 , pp. 551-561
    • Wang, K.H.1    Peng, H.Z.2    Lin, E.P.3    Jin, Q.Y.4    Hua, X.Q.5    Yao, S.6    Bian, H.W.7    Han, N.8    Pan, J.W.9    Wang, J.H.10
  • 17
    • 78751644164 scopus 로고    scopus 로고
    • Identification of rhizome-specific genes by genome-wide differential expression analysis in Oryza longistaminata
    • 10.1186/1471-2229-11-18, 3036607, 21261937
    • Hu F, Wang D, Zhao X, Zhang T, Sun H, Zhu L, Zhang F, Li L, Li Q, Tao D, et al. Identification of rhizome-specific genes by genome-wide differential expression analysis in Oryza longistaminata. BMC Plant Biol 2011, 11:18. 10.1186/1471-2229-11-18, 3036607, 21261937.
    • (2011) BMC Plant Biol , vol.11 , pp. 18
    • Hu, F.1    Wang, D.2    Zhao, X.3    Zhang, T.4    Sun, H.5    Zhu, L.6    Zhang, F.7    Li, L.8    Li, Q.9    Tao, D.10
  • 18
    • 80054733932 scopus 로고    scopus 로고
    • Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
    • 10.1038/nbt.1976, 21964414
    • Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, et al. Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Nat Biotechnol 2011, 29(10):922-927. 10.1038/nbt.1976, 21964414.
    • (2011) Nat Biotechnol , vol.29 , Issue.10 , pp. 922-927
    • Berka, R.M.1    Grigoriev, I.V.2    Otillar, R.3    Salamov, A.4    Grimwood, J.5    Reid, I.6    Ishmael, N.7    John, T.8    Darmond, C.9    Moisan, M.C.10
  • 19
    • 27444432786 scopus 로고    scopus 로고
    • Antifungal activity against plant pathogenic fungi of chaetoviridins isolated from Chaetomium globosum
    • 10.1016/j.femsle.2005.09.013, 16209910
    • Park JH, Choi GJ, Jang KS, Lim HK, Kim HT, Cho KY, Kim JC. Antifungal activity against plant pathogenic fungi of chaetoviridins isolated from Chaetomium globosum. FEMS Microbiol Lett 2005, 252(2):309-313. 10.1016/j.femsle.2005.09.013, 16209910.
    • (2005) FEMS Microbiol Lett , vol.252 , Issue.2 , pp. 309-313
    • Park, J.H.1    Choi, G.J.2    Jang, K.S.3    Lim, H.K.4    Kim, H.T.5    Cho, K.Y.6    Kim, J.C.7
  • 21
    • 84870248765 scopus 로고    scopus 로고
    • Efficacy assessment of antifungal metabolites from Chaetomium globosum No.05, a new biocontrol agent, against Setosphaeria turcica
    • Zhang GZ, Wang FT, Qin JC, Wang D, Zhang JY, Zhang YH, Zhang SH, Pan HY. Efficacy assessment of antifungal metabolites from Chaetomium globosum No.05, a new biocontrol agent, against Setosphaeria turcica. Biol Control 2013, 64(1):90-98.
    • (2013) Biol Control , vol.64 , Issue.1 , pp. 90-98
    • Zhang, G.Z.1    Wang, F.T.2    Qin, J.C.3    Wang, D.4    Zhang, J.Y.5    Zhang, Y.H.6    Zhang, S.H.7    Pan, H.Y.8
  • 22
    • 1842591134 scopus 로고    scopus 로고
    • Trichoderma species - Opportunistic, avirulent plant symbionts
    • 10.1038/nrmicro797, 15035008
    • Harman GE, Howell CR, Viterbo A, Chet I, Lorito M. Trichoderma species - Opportunistic, avirulent plant symbionts. Nat Rev Microbiol 2004, 2(1):43-56. 10.1038/nrmicro797, 15035008.
    • (2004) Nat Rev Microbiol , vol.2 , Issue.1 , pp. 43-56
    • Harman, G.E.1    Howell, C.R.2    Viterbo, A.3    Chet, I.4    Lorito, M.5
  • 24
    • 84863034400 scopus 로고    scopus 로고
    • Unveiling the biosynthetic puzzle of destruxins in Metarhizium species
    • 10.1073/pnas.1115983109, 3268274, 22232661
    • Wang B, Kang QJ, Lu YZ, Bai LQ, Wang CS. Unveiling the biosynthetic puzzle of destruxins in Metarhizium species. Proc Natl Acad Sci U S A 2012, 109(4):1287-1292. 10.1073/pnas.1115983109, 3268274, 22232661.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , Issue.4 , pp. 1287-1292
    • Wang, B.1    Kang, Q.J.2    Lu, Y.Z.3    Bai, L.Q.4    Wang, C.S.5
  • 25
    • 79851472311 scopus 로고    scopus 로고
    • Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum
    • 10.1371/journal.pgen.1001264, 3017113, 21253567
    • Gao QA, Jin K, Ying SH, Zhang YJ, Xiao GH, Shang YF, Duan ZB, Hu XA, Xie XQ, Zhou G, et al. Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum. Plos Genet 2011, 7(1):e1001264. 10.1371/journal.pgen.1001264, 3017113, 21253567.
    • (2011) Plos Genet , vol.7 , Issue.1
    • Gao, Q.A.1    Jin, K.2    Ying, S.H.3    Zhang, Y.J.4    Xiao, G.H.5    Shang, Y.F.6    Duan, Z.B.7    Hu, X.A.8    Xie, X.Q.9    Zhou, G.10
  • 26
    • 61849133540 scopus 로고    scopus 로고
    • Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants
    • Huang WY, Cai YZ, Hyde KD, Corke H, Sun M. Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants. Fungal Divers 2008, 33:61-75.
    • (2008) Fungal Divers , vol.33 , pp. 61-75
    • Huang, W.Y.1    Cai, Y.Z.2    Hyde, K.D.3    Corke, H.4    Sun, M.5
  • 27
    • 19444378703 scopus 로고    scopus 로고
    • Morphological and molecular characterization of Colletotrichum species from herbaceous plants in Thailand
    • Photita W, Taylor PWJ, Ford R, Hyde KD, Lumyong S. Morphological and molecular characterization of Colletotrichum species from herbaceous plants in Thailand. Fungal Divers 2005, 18:117-133.
    • (2005) Fungal Divers , vol.18 , pp. 117-133
    • Photita, W.1    Taylor, P.W.J.2    Ford, R.3    Hyde, K.D.4    Lumyong, S.5
  • 29
    • 0025527672 scopus 로고
    • Fungal Endophytes of Grasses
    • Clay K. Fungal Endophytes of Grasses. Annu Rev Ecol Syst 1990, 21:275-297.
    • (1990) Annu Rev Ecol Syst , vol.21 , pp. 275-297
    • Clay, K.1
  • 30
    • 80051773280 scopus 로고    scopus 로고
    • Hidden fungi, emergent properties: endophytes and microbiomes
    • 10.1146/annurev-phyto-080508-081831, 19400639
    • Porras-Alfaro A, Bayman P. Hidden fungi, emergent properties: endophytes and microbiomes. Annu Rev Phytopathol 2011, 49:291-315. 10.1146/annurev-phyto-080508-081831, 19400639.
    • (2011) Annu Rev Phytopathol , vol.49 , pp. 291-315
    • Porras-Alfaro, A.1    Bayman, P.2
  • 31
    • 79956226364 scopus 로고    scopus 로고
    • Unraveling the role of fungal symbionts in plant abiotic stress tolerance
    • 10.4161/psb.6.2.14146, 3121976, 21512319
    • Singh LP, Gill SS, Tuteja N. Unraveling the role of fungal symbionts in plant abiotic stress tolerance. Plant Signal Behav 2011, 6(2):175-191. 10.4161/psb.6.2.14146, 3121976, 21512319.
    • (2011) Plant Signal Behav , vol.6 , Issue.2 , pp. 175-191
    • Singh, L.P.1    Gill, S.S.2    Tuteja, N.3
  • 32
    • 84879429119 scopus 로고    scopus 로고
    • A fungal endophyte induces transcription of genes encoding a redundant fungicide pathway in its host plant
    • 10.1186/1471-2229-13-93, 3700885, 23802696
    • Soliman SSM, Trobacher CP, Tsao R, Greenwood JS, Raizada MN. A fungal endophyte induces transcription of genes encoding a redundant fungicide pathway in its host plant. BMC Plant Biol 2013, 13:93. 10.1186/1471-2229-13-93, 3700885, 23802696.
    • (2013) BMC Plant Biol , vol.13 , pp. 93
    • Soliman, S.S.M.1    Trobacher, C.P.2    Tsao, R.3    Greenwood, J.S.4    Raizada, M.N.5
  • 33
    • 84874772540 scopus 로고    scopus 로고
    • Plant-symbiotic fungi as chemical engineers: Multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid Loci
    • 10.1371/journal.pgen.1003323, 3585121, 23468653
    • Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, et al. Plant-symbiotic fungi as chemical engineers: Multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid Loci. Plos Genet 2013, 9(2):e1003323. 10.1371/journal.pgen.1003323, 3585121, 23468653.
    • (2013) Plos Genet , vol.9 , Issue.2
    • Schardl, C.L.1    Young, C.A.2    Hesse, U.3    Amyotte, S.G.4    Andreeva, K.5    Calie, P.J.6    Fleetwood, D.J.7    Haws, D.C.8    Moore, N.9    Oeser, B.10
  • 34
    • 84884197279 scopus 로고    scopus 로고
    • Bacterial endophytes enhance competition by invasive plants
    • 10.3732/ajb.1200577, 23935109
    • Rout ME, Chrzanowski TH, Westlie TK, DeLuca TH, Callaway RM, Holben WE. Bacterial endophytes enhance competition by invasive plants. Am J Bot 2013, 100(9):1726-1737. 10.3732/ajb.1200577, 23935109.
    • (2013) Am J Bot , vol.100 , Issue.9 , pp. 1726-1737
    • Rout, M.E.1    Chrzanowski, T.H.2    Westlie, T.K.3    DeLuca, T.H.4    Callaway, R.M.5    Holben, W.E.6
  • 35
    • 51349166778 scopus 로고    scopus 로고
    • Hidden diversity of endophytic fungi in an invasive plant
    • 10.3732/ajb.0800024, 21632429
    • Shipunov A, Newcombe G, Raghavendra AKH, Anderson CL. Hidden diversity of endophytic fungi in an invasive plant. Am J Bot 2008, 95(9):1096-1108. 10.3732/ajb.0800024, 21632429.
    • (2008) Am J Bot , vol.95 , Issue.9 , pp. 1096-1108
    • Shipunov, A.1    Newcombe, G.2    Raghavendra, A.K.H.3    Anderson, C.L.4
  • 36
    • 0033543675 scopus 로고    scopus 로고
    • Fungal endophyte symbiosis and plant diversity in successional fields
    • 10.1126/science.285.5434.1742, 10481011
    • Clay K, Holah J. Fungal endophyte symbiosis and plant diversity in successional fields. Science 1999, 285(5434):1742-1744. 10.1126/science.285.5434.1742, 10481011.
    • (1999) Science , vol.285 , Issue.5434 , pp. 1742-1744
    • Clay, K.1    Holah, J.2
  • 37
    • 84876691031 scopus 로고    scopus 로고
    • Pathogen accumulation and long-term dynamics of plant invasions
    • Flory SL, Clay K. Pathogen accumulation and long-term dynamics of plant invasions. J Ecol 2013, 101(3):607-613.
    • (2013) J Ecol , vol.101 , Issue.3 , pp. 607-613
    • Flory, S.L.1    Clay, K.2
  • 38
    • 15744366634 scopus 로고    scopus 로고
    • Identification of mature appressorium-enriched transcripts in Magnaporthe grisea, the rice blast fungus, using suppression subtractive hybridization
    • 10.1016/j.femsle.2005.02.032, 15796990
    • Lu JP, Liu TB, Lin FC. Identification of mature appressorium-enriched transcripts in Magnaporthe grisea, the rice blast fungus, using suppression subtractive hybridization. FEMS Microbiol Lett 2005, 245(1):131-137. 10.1016/j.femsle.2005.02.032, 15796990.
    • (2005) FEMS Microbiol Lett , vol.245 , Issue.1 , pp. 131-137
    • Lu, J.P.1    Liu, T.B.2    Lin, F.C.3
  • 39
    • 0035111498 scopus 로고    scopus 로고
    • Alcohol oxidase is a novel pathogenicity factor for Cladosporium fulvum, but aldehyde dehydrogenase is dispensable
    • 10.1094/MPMI.2001.14.3.367, 11277434
    • Segers G, Bradshaw N, Archer D, Blissett K, Oliver RP. Alcohol oxidase is a novel pathogenicity factor for Cladosporium fulvum, but aldehyde dehydrogenase is dispensable. Mol Plant Microbe Interact 2001, 14(3):367-377. 10.1094/MPMI.2001.14.3.367, 11277434.
    • (2001) Mol Plant Microbe Interact , vol.14 , Issue.3 , pp. 367-377
    • Segers, G.1    Bradshaw, N.2    Archer, D.3    Blissett, K.4    Oliver, R.P.5
  • 41
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • 10.1093/bioinformatics/btp616, 2796818, 19910308
    • Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26(1):139-140. 10.1093/bioinformatics/btp616, 2796818, 19910308.
    • (2010) Bioinformatics , vol.26 , Issue.1 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 42
    • 77953212372 scopus 로고    scopus 로고
    • Gene ontology analysis for RNA-seq: accounting for selection bias
    • 10.1186/gb-2010-11-2-r14, 2872874, 20132535
    • Young MD, Wakefield MJ, Smyth GK, Oshlack A. Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol 2010, 11(2):R14. 10.1186/gb-2010-11-2-r14, 2872874, 20132535.
    • (2010) Genome Biol , vol.11 , Issue.2
    • Young, M.D.1    Wakefield, M.J.2    Smyth, G.K.3    Oshlack, A.4
  • 43
    • 84894385814 scopus 로고    scopus 로고
    • A dynamic model for phytohormone control of rhizome growth and development
    • McDowell ET, Gang DR. A dynamic model for phytohormone control of rhizome growth and development. Recent Adv Phytochem 2012, 42:143-165.
    • (2012) Recent Adv Phytochem , vol.42 , pp. 143-165
    • McDowell, E.T.1    Gang, D.R.2
  • 44
    • 0034771551 scopus 로고    scopus 로고
    • Expression of beta -Expansins Is Correlated with Internodal Elongation in Deepwater Rice
    • 10.1104/pp.010345, 125099, 11598238
    • Lee Y, Kende H. Expression of beta -Expansins Is Correlated with Internodal Elongation in Deepwater Rice. Plant Physiol 2001, 127(2):645-654. 10.1104/pp.010345, 125099, 11598238.
    • (2001) Plant Physiol , vol.127 , Issue.2 , pp. 645-654
    • Lee, Y.1    Kende, H.2
  • 46
    • 0033150292 scopus 로고    scopus 로고
    • Expression of a gibberellin-induced leucine-rich repeat receptor-like protein kinase in deepwater rice and its interaction with kinase-associated protein phosphatase
    • 10.1104/pp.120.2.559, 59295, 10364408
    • van der Knaap E, Song WY, Ruan DL, Sauter M, Ronald PC, Kende H. Expression of a gibberellin-induced leucine-rich repeat receptor-like protein kinase in deepwater rice and its interaction with kinase-associated protein phosphatase. Plant Physiol 1999, 120(2):559-570. 10.1104/pp.120.2.559, 59295, 10364408.
    • (1999) Plant Physiol , vol.120 , Issue.2 , pp. 559-570
    • van der Knaap, E.1    Song, W.Y.2    Ruan, D.L.3    Sauter, M.4    Ronald, P.C.5    Kende, H.6
  • 47
    • 77956270429 scopus 로고    scopus 로고
    • The role and regulation of receptor-like kinases in plant defense
    • Goff KE, Ramonell KM. The role and regulation of receptor-like kinases in plant defense. Gene Regul Syst Biol 2007, 1:167-175.
    • (2007) Gene Regul Syst Biol , vol.1 , pp. 167-175
    • Goff, K.E.1    Ramonell, K.M.2
  • 49
    • 0031907592 scopus 로고    scopus 로고
    • A flavonoid 7-O-methyltransferase is expressed in barley leaves in response to pathogen attack
    • 10.1023/A:1005985609313, 9484434
    • Christensen AB, Gregersen PL, Olsen CE, Collinge DB. A flavonoid 7-O-methyltransferase is expressed in barley leaves in response to pathogen attack. Plant Mol Biol 1998, 36(2):219-227. 10.1023/A:1005985609313, 9484434.
    • (1998) Plant Mol Biol , vol.36 , Issue.2 , pp. 219-227
    • Christensen, A.B.1    Gregersen, P.L.2    Olsen, C.E.3    Collinge, D.B.4
  • 50
    • 72149094323 scopus 로고    scopus 로고
    • OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance
    • Gothandam KM, Nalini E, Karthikeyan S, Shin JS. OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance. Plant Mol Biol 2010, 72(1-2):125-135.
    • (2010) Plant Mol Biol , vol.72 , Issue.1-2 , pp. 125-135
    • Gothandam, K.M.1    Nalini, E.2    Karthikeyan, S.3    Shin, J.S.4
  • 51
    • 69249101630 scopus 로고    scopus 로고
    • Loss of function of a proline-containing protein confers durable disease resistance in rice
    • 10.1126/science.1175550, 19696351
    • Fukuoka S, Saka N, Koga H, Ono K, Shimizu T, Ebana K, Hayashi N, Takahashi A, Hirochika H, Okuno K, et al. Loss of function of a proline-containing protein confers durable disease resistance in rice. Science 2009, 325(5943):998-1001. 10.1126/science.1175550, 19696351.
    • (2009) Science , vol.325 , Issue.5943 , pp. 998-1001
    • Fukuoka, S.1    Saka, N.2    Koga, H.3    Ono, K.4    Shimizu, T.5    Ebana, K.6    Hayashi, N.7    Takahashi, A.8    Hirochika, H.9    Okuno, K.10
  • 52
    • 37349092681 scopus 로고    scopus 로고
    • Papain-like cysteine proteases: key players at molecular battlefields employed by both plants and their invaders
    • Shindo T, Van Der Hoorn RAL. Papain-like cysteine proteases: key players at molecular battlefields employed by both plants and their invaders. Mol Plant Pathol 2008, 9(1):119-125.
    • (2008) Mol Plant Pathol , vol.9 , Issue.1 , pp. 119-125
    • Shindo, T.1    Van Der Hoorn, R.A.L.2
  • 53
    • 78651337578 scopus 로고    scopus 로고
    • PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
    • Database issue, 3013715, 21097470
    • Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, Luo J. PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res 2011, 39(Database issue):D1114-D1117. 3013715, 21097470.
    • (2011) Nucleic Acids Res , vol.39
    • Zhang, H.1    Jin, J.2    Tang, L.3    Zhao, Y.4    Gu, X.5    Gao, G.6    Luo, J.7
  • 54
    • 33750916729 scopus 로고    scopus 로고
    • The FEATHERED gene is required for polarity establishment in lateral organs especially flowers of the Japanese morning glory (I pomoea nil)
    • 10.1007/s11103-006-9066-2, 16972166
    • Iwasaki M, Nitasaka E. The FEATHERED gene is required for polarity establishment in lateral organs especially flowers of the Japanese morning glory (I pomoea nil). Plant Mol Biol 2006, 62(6):913-925. 10.1007/s11103-006-9066-2, 16972166.
    • (2006) Plant Mol Biol , vol.62 , Issue.6 , pp. 913-925
    • Iwasaki, M.1    Nitasaka, E.2
  • 55
    • 44349107589 scopus 로고    scopus 로고
    • Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication
    • 10.1038/ng.144, 18469814
    • Cong B, Barrero LS, Tanksley SD. Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nat Genet 2008, 40(6):800-804. 10.1038/ng.144, 18469814.
    • (2008) Nat Genet , vol.40 , Issue.6 , pp. 800-804
    • Cong, B.1    Barrero, L.S.2    Tanksley, S.D.3
  • 56
    • 78751657776 scopus 로고    scopus 로고
    • Control of arabidopsis leaf morphogenesis through regulation of the YABBY and KNOX families of transcription factors
    • 10.1534/genetics.110.118703, 2940287, 20610407
    • Ha CM, Jun JH, Fletcher JC. Control of arabidopsis leaf morphogenesis through regulation of the YABBY and KNOX families of transcription factors. Genetics 2010, 186(1):197-U335. 10.1534/genetics.110.118703, 2940287, 20610407.
    • (2010) Genetics , vol.186 , Issue.1
    • Ha, C.M.1    Jun, J.H.2    Fletcher, J.C.3
  • 57
    • 34250678845 scopus 로고    scopus 로고
    • The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism
    • 10.1104/pp.107.096586, 1913802, 17369428
    • Dai MQ, Zhao Y, Ma QF, Hu Y, Hedden PF, Zhang Q, Zhou DX. The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol 2007, 144(1):121-133. 10.1104/pp.107.096586, 1913802, 17369428.
    • (2007) Plant Physiol , vol.144 , Issue.1 , pp. 121-133
    • Dai, M.Q.1    Zhao, Y.2    Ma, Q.F.3    Hu, Y.4    Hedden, P.F.5    Zhang, Q.6    Zhou, D.X.7
  • 58
    • 46749110463 scopus 로고    scopus 로고
    • The TTG1-bHLH-MYB complex controls trichome cell fate and patterning through direct targeting of regulatory loci
    • 10.1242/dev.016873, 18434419
    • Zhao M, Morohashi K, Hatlestad G, Grotewold E, Lloyd A. The TTG1-bHLH-MYB complex controls trichome cell fate and patterning through direct targeting of regulatory loci. Development 2008, 135(11):1991-1999. 10.1242/dev.016873, 18434419.
    • (2008) Development , vol.135 , Issue.11 , pp. 1991-1999
    • Zhao, M.1    Morohashi, K.2    Hatlestad, G.3    Grotewold, E.4    Lloyd, A.5
  • 59
    • 78149489254 scopus 로고    scopus 로고
    • Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root
    • 10.1016/j.cell.2010.10.020, 21074051
    • Tsukagoshi H, Busch W, Benfey PN. Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell 2010, 143(4):606-616. 10.1016/j.cell.2010.10.020, 21074051.
    • (2010) Cell , vol.143 , Issue.4 , pp. 606-616
    • Tsukagoshi, H.1    Busch, W.2    Benfey, P.N.3
  • 60
    • 0036961425 scopus 로고    scopus 로고
    • Expression patterns and mutant phenotype of teosinte branched1 correlate with growth suppression in maize and teosinte
    • 1462370, 12524360
    • Hubbard L, McSteen P, Doebley J, Hake S. Expression patterns and mutant phenotype of teosinte branched1 correlate with growth suppression in maize and teosinte. Genetics 2002, 162(4):1927-1935. 1462370, 12524360.
    • (2002) Genetics , vol.162 , Issue.4 , pp. 1927-1935
    • Hubbard, L.1    McSteen, P.2    Doebley, J.3    Hake, S.4
  • 61
    • 0037324657 scopus 로고    scopus 로고
    • The OsTB1 gene negatively regulates lateral branching in rice
    • 10.1046/j.1365-313X.2003.01648.x, 12581309
    • Takeda T, Suwa Y, Suzuki M, Kitano H, Ueguchi-Tanaka M, Ashikari M, Matsuoka M, Ueguchi C. The OsTB1 gene negatively regulates lateral branching in rice. Plant J 2003, 33(3):513-520. 10.1046/j.1365-313X.2003.01648.x, 12581309.
    • (2003) Plant J , vol.33 , Issue.3 , pp. 513-520
    • Takeda, T.1    Suwa, Y.2    Suzuki, M.3    Kitano, H.4    Ueguchi-Tanaka, M.5    Ashikari, M.6    Matsuoka, M.7    Ueguchi, C.8
  • 62
    • 77953172055 scopus 로고    scopus 로고
    • Plant volatiles
    • 10.1016/j.cub.2010.02.052, 20462477
    • Baldwin IT. Plant volatiles. Curr Biol 2010, 20(9):R392-R397. 10.1016/j.cub.2010.02.052, 20462477.
    • (2010) Curr Biol , vol.20 , Issue.9
    • Baldwin, I.T.1
  • 63
    • 0034687818 scopus 로고    scopus 로고
    • A maize sesquiterpene cyclase gene induced by insect herbivory and volicitin: characterization of wild-type and mutant alleles
    • 10.1073/pnas.240284097, 19000, 11106370
    • Shen B, Zheng Z, Dooner HK. A maize sesquiterpene cyclase gene induced by insect herbivory and volicitin: characterization of wild-type and mutant alleles. Proc Natl Acad Sci U S A 2000, 97(26):14807-14812. 10.1073/pnas.240284097, 19000, 11106370.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , Issue.26 , pp. 14807-14812
    • Shen, B.1    Zheng, Z.2    Dooner, H.K.3
  • 64
    • 32244431790 scopus 로고    scopus 로고
    • The products of a single maize sesquiterpene synthase form a volatile defense signal that attracts natural enemies of maize herbivores
    • 10.1073/pnas.0508027103, 1347987, 16418295
    • Schnee C, Kollner TG, Held M, Turlings TC, Gershenzon J, Degenhardt J. The products of a single maize sesquiterpene synthase form a volatile defense signal that attracts natural enemies of maize herbivores. Proc Natl Acad Sci U S A 2006, 103(4):1129-1134. 10.1073/pnas.0508027103, 1347987, 16418295.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.4 , pp. 1129-1134
    • Schnee, C.1    Kollner, T.G.2    Held, M.3    Turlings, T.C.4    Gershenzon, J.5    Degenhardt, J.6
  • 66
    • 18044391639 scopus 로고    scopus 로고
    • Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers
    • 10.1111/j.1365-313X.2005.02417.x, 15918888
    • Tholl D, Chen F, Petri J, Gershenzon J, Pichersky E. Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers. Plant J 2005, 42(5):757-771. 10.1111/j.1365-313X.2005.02417.x, 15918888.
    • (2005) Plant J , vol.42 , Issue.5 , pp. 757-771
    • Tholl, D.1    Chen, F.2    Petri, J.3    Gershenzon, J.4    Pichersky, E.5
  • 67
    • 0036011085 scopus 로고    scopus 로고
    • The formation and function of plant volatiles: perfumes for pollinator attraction and defense
    • 10.1016/S1369-5266(02)00251-0, 11960742
    • Pichersky E, Gershenzon J. The formation and function of plant volatiles: perfumes for pollinator attraction and defense. Curr Opin Plant Biol 2002, 5(3):237-243. 10.1016/S1369-5266(02)00251-0, 11960742.
    • (2002) Curr Opin Plant Biol , vol.5 , Issue.3 , pp. 237-243
    • Pichersky, E.1    Gershenzon, J.2
  • 68
    • 84864430319 scopus 로고    scopus 로고
    • Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression
    • 10.1105/tpc.112.098749, 3406894, 22669881
    • Hong GJ, Xue XY, Mao YB, Wang LJ, Chen XY. Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression. Plant Cell 2012, 24(6):2635-2648. 10.1105/tpc.112.098749, 3406894, 22669881.
    • (2012) Plant Cell , vol.24 , Issue.6 , pp. 2635-2648
    • Hong, G.J.1    Xue, X.Y.2    Mao, Y.B.3    Wang, L.J.4    Chen, X.Y.5
  • 69
    • 0141920354 scopus 로고    scopus 로고
    • Comparing protein abundance and mRNA expression levels on a genomic scale
    • 10.1186/gb-2003-4-9-117, 193646, 12952525
    • Greenbaum D, Colangelo C, Williams K, Gerstein M. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 2003, 4(9):117. 10.1186/gb-2003-4-9-117, 193646, 12952525.
    • (2003) Genome Biol , vol.4 , Issue.9 , pp. 117
    • Greenbaum, D.1    Colangelo, C.2    Williams, K.3    Gerstein, M.4
  • 70
    • 77954247251 scopus 로고    scopus 로고
    • Studies of a biochemical factory: tomato trichome deep expressed sequence tag sequencing and proteomics
    • 10.1104/pp.110.157214, 2899918, 20431087
    • Schilmiller AL, Miner DP, Larson M, McDowell E, Gang DR, Wilkerson C, Last RL. Studies of a biochemical factory: tomato trichome deep expressed sequence tag sequencing and proteomics. Plant Physiol 2010, 153(3):1212-1223. 10.1104/pp.110.157214, 2899918, 20431087.
    • (2010) Plant Physiol , vol.153 , Issue.3 , pp. 1212-1223
    • Schilmiller, A.L.1    Miner, D.P.2    Larson, M.3    McDowell, E.4    Gang, D.R.5    Wilkerson, C.6    Last, R.L.7
  • 72
    • 77950524249 scopus 로고    scopus 로고
    • Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression
    • 10.1104/pp.109.152413, 2850034, 20118269
    • Hajduch M, Hearne LB, Miernyk JA, Casteel JE, Joshi T, Agrawal GK, Song Z, Zhou MY, Xu D, Thelen JJ. Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. Plant Physiol 2010, 152(4):2078-2087. 10.1104/pp.109.152413, 2850034, 20118269.
    • (2010) Plant Physiol , vol.152 , Issue.4 , pp. 2078-2087
    • Hajduch, M.1    Hearne, L.B.2    Miernyk, J.A.3    Casteel, J.E.4    Joshi, T.5    Agrawal, G.K.6    Song, Z.7    Zhou, M.Y.8    Xu, D.9    Thelen, J.J.10
  • 73
    • 80053337795 scopus 로고    scopus 로고
    • Genetic Variation Shapes Protein Networks Mainly through Non-transcriptional Mechanisms
    • 10.1371/journal.pbio.1001144, 3167781, 21909241
    • Foss EJ, Radulovic D, Shaffer SA, Goodlett DR, Kruglyak L, Bedalov A. Genetic Variation Shapes Protein Networks Mainly through Non-transcriptional Mechanisms. Plos Biol 2011, 9(9):e1001144. 10.1371/journal.pbio.1001144, 3167781, 21909241.
    • (2011) Plos Biol , vol.9 , Issue.9
    • Foss, E.J.1    Radulovic, D.2    Shaffer, S.A.3    Goodlett, D.R.4    Kruglyak, L.5    Bedalov, A.6
  • 75
    • 0037324989 scopus 로고    scopus 로고
    • Mutations in a gene for plastid ribosomal protein S6-like protein reveal a novel developmental process required for the correct organization of lateral root meristem in Arabidopsis
    • 10.1046/j.1365-313X.2003.01651.x, 12581310
    • Horiguchi G, Kodama H, Iba K. Mutations in a gene for plastid ribosomal protein S6-like protein reveal a novel developmental process required for the correct organization of lateral root meristem in Arabidopsis. Plant J 2003, 33(3):521-529. 10.1046/j.1365-313X.2003.01651.x, 12581310.
    • (2003) Plant J , vol.33 , Issue.3 , pp. 521-529
    • Horiguchi, G.1    Kodama, H.2    Iba, K.3
  • 76
    • 84867579813 scopus 로고    scopus 로고
    • Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant equisetum hyemale
    • 3382741, 22740841
    • Balbuena TS, He R, Salvato F, Gang DR, Thelen JJ. Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant equisetum hyemale. Front Plant Sci 2012, 3:131. 3382741, 22740841.
    • (2012) Front Plant Sci , vol.3 , pp. 131
    • Balbuena, T.S.1    He, R.2    Salvato, F.3    Gang, D.R.4    Thelen, J.J.5
  • 77
    • 33750219419 scopus 로고    scopus 로고
    • EBP1 regulates organ size through cell growth and proliferation in plants
    • 10.1038/sj.emboj.7601362, 1618091, 17024182
    • Horvath BM, Magyar Z, Zhang YX, Hamburger AW, Bako L, Visser RG, Bachem CW, Bogre L. EBP1 regulates organ size through cell growth and proliferation in plants. Embo J 2006, 25(20):4909-4920. 10.1038/sj.emboj.7601362, 1618091, 17024182.
    • (2006) Embo J , vol.25 , Issue.20 , pp. 4909-4920
    • Horvath, B.M.1    Magyar, Z.2    Zhang, Y.X.3    Hamburger, A.W.4    Bako, L.5    Visser, R.G.6    Bachem, C.W.7    Bogre, L.8
  • 78
    • 78650948466 scopus 로고    scopus 로고
    • A two-step mechanism for the folding of actin by the yeast cytosolic chaperonin
    • 10.1074/jbc.M110.166256, 3012972, 21056978
    • Stuart SF, Leatherbarrow RJ, Willison KR. A two-step mechanism for the folding of actin by the yeast cytosolic chaperonin. J Biol Chem 2011, 286(1):178-184. 10.1074/jbc.M110.166256, 3012972, 21056978.
    • (2011) J Biol Chem , vol.286 , Issue.1 , pp. 178-184
    • Stuart, S.F.1    Leatherbarrow, R.J.2    Willison, K.R.3
  • 79
    • 0026650749 scopus 로고
    • Tcp1 complex is a molecular chaperone in tubulin biogenesis
    • 10.1038/358245a0, 1630491
    • Yaffe MB, Farr GW, Miklos D, Horwich AL, Sternlicht ML, Sternlicht H. Tcp1 complex is a molecular chaperone in tubulin biogenesis. Nature 1992, 358(6383):245-248. 10.1038/358245a0, 1630491.
    • (1992) Nature , vol.358 , Issue.6383 , pp. 245-248
    • Yaffe, M.B.1    Farr, G.W.2    Miklos, D.3    Horwich, A.L.4    Sternlicht, M.L.5    Sternlicht, H.6
  • 80
    • 33748323084 scopus 로고    scopus 로고
    • Proteomic analysis of root meristems and the effects of acetohydroxyacid synthase-inhibiting herbicides in the root of Medicago truncatula
    • 10.1021/pr0600677, 16944943
    • Holmes P, Farquharson R, Hall PJ, Rolfe BG. Proteomic analysis of root meristems and the effects of acetohydroxyacid synthase-inhibiting herbicides in the root of Medicago truncatula. J Proteome Res 2006, 5(9):2309-2316. 10.1021/pr0600677, 16944943.
    • (2006) J Proteome Res , vol.5 , Issue.9 , pp. 2309-2316
    • Holmes, P.1    Farquharson, R.2    Hall, P.J.3    Rolfe, B.G.4
  • 81
    • 27244454211 scopus 로고    scopus 로고
    • The cotton ACTIN1 gene is functionally expressed in fibers and participates in fiber elongation
    • 10.1105/tpc.104.029629, 1069704, 15722467
    • Li XB, Fan XP, Wang XL, Cai L, Yang WC. The cotton ACTIN1 gene is functionally expressed in fibers and participates in fiber elongation. Plant Cell 2005, 17(3):859-875. 10.1105/tpc.104.029629, 1069704, 15722467.
    • (2005) Plant Cell , vol.17 , Issue.3 , pp. 859-875
    • Li, X.B.1    Fan, X.P.2    Wang, X.L.3    Cai, L.4    Yang, W.C.5
  • 82
    • 0033199031 scopus 로고    scopus 로고
    • Gene-specific changes in alpha-tubulin transcript accumulation in developing cotton fibers
    • 10.1104/pp.121.1.181, 59366, 10482673
    • Whittaker DJ, Triplett BA. Gene-specific changes in alpha-tubulin transcript accumulation in developing cotton fibers. Plant Physiol 1999, 121(1):181-188. 10.1104/pp.121.1.181, 59366, 10482673.
    • (1999) Plant Physiol , vol.121 , Issue.1 , pp. 181-188
    • Whittaker, D.J.1    Triplett, B.A.2
  • 83
    • 27244456193 scopus 로고    scopus 로고
    • Arabidopsis VILLIN1 generates actin filament cables that are resistant to depolymerization
    • 10.1105/tpc.104.028555, 548821, 15659626
    • Huang S, Robinson RC, Gao LY, Matsumoto T, Brunet A, Blanchoin L, Staiger CJ. Arabidopsis VILLIN1 generates actin filament cables that are resistant to depolymerization. Plant Cell 2005, 17(2):486-501. 10.1105/tpc.104.028555, 548821, 15659626.
    • (2005) Plant Cell , vol.17 , Issue.2 , pp. 486-501
    • Huang, S.1    Robinson, R.C.2    Gao, L.Y.3    Matsumoto, T.4    Brunet, A.5    Blanchoin, L.6    Staiger, C.J.7
  • 84
    • 0001751630 scopus 로고
    • Allantoin and allantoic acid in tissues and stem exudate from field-grown soybean plants
    • 10.1104/pp.63.3.478, 542854, 16660751
    • Streeter JG. Allantoin and allantoic acid in tissues and stem exudate from field-grown soybean plants. Plant Physiol 1979, 63(3):478-480. 10.1104/pp.63.3.478, 542854, 16660751.
    • (1979) Plant Physiol , vol.63 , Issue.3 , pp. 478-480
    • Streeter, J.G.1
  • 85
    • 34347398000 scopus 로고    scopus 로고
    • ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis
    • 10.1105/tpc.106.048041, 1913739, 17513501
    • Adie BAT, Perez-Perez J, Perez-Perez MM, Godoy M, Sanchez-Serrano JJ, Schmelz EA, Solano R. ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis. Plant Cell 2007, 19(5):1665-1681. 10.1105/tpc.106.048041, 1913739, 17513501.
    • (2007) Plant Cell , vol.19 , Issue.5 , pp. 1665-1681
    • Adie, B.A.T.1    Perez-Perez, J.2    Perez-Perez, M.M.3    Godoy, M.4    Sanchez-Serrano, J.J.5    Schmelz, E.A.6    Solano, R.7
  • 88
    • 84880092725 scopus 로고    scopus 로고
    • Fungal symbionts alter plant responses to global change
    • 10.3732/ajb.1200558, 23757444
    • Kivlin SN, Emery SM, Rudgers JA. Fungal symbionts alter plant responses to global change. Am J Bot 2013, 100(7):1445-1457. 10.3732/ajb.1200558, 23757444.
    • (2013) Am J Bot , vol.100 , Issue.7 , pp. 1445-1457
    • Kivlin, S.N.1    Emery, S.M.2    Rudgers, J.A.3
  • 89
    • 84863338285 scopus 로고    scopus 로고
    • Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity
    • 10.3732/ajb.1100429, 22301892
    • He R, Kim MJ, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, et al. Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity. Am J Bot 2012, 99(2):232-247. 10.3732/ajb.1100429, 22301892.
    • (2012) Am J Bot , vol.99 , Issue.2 , pp. 232-247
    • He, R.1    Kim, M.J.2    Nelson, W.3    Balbuena, T.S.4    Kim, R.5    Kramer, R.6    Crow, J.A.7    May, G.D.8    Thelen, J.J.9    Soderlund, C.A.10
  • 91
    • 0027692823 scopus 로고
    • Identification and characterization of Mpg1, a gene involved in pathogenicity from the rice blast fungus magnaporthe grisea
    • 160387, 8312740
    • Talbot NJ, Ebbole DJ, Hamer JE. Identification and characterization of Mpg1, a gene involved in pathogenicity from the rice blast fungus magnaporthe grisea. Plant Cell 1993, 5(11):1575-1590. 160387, 8312740.
    • (1993) Plant Cell , vol.5 , Issue.11 , pp. 1575-1590
    • Talbot, N.J.1    Ebbole, D.J.2    Hamer, J.E.3
  • 92
    • 77953191409 scopus 로고    scopus 로고
    • Common genetic pathways regulate organ-specific infection-related development in the rice blast fungus
    • 10.1105/tpc.109.066340, 2861474, 20348434
    • Tucker SL, Besi MI, Galhano R, Franceschetti M, Goetz S, Lenhert S, Osbourn A, Sesma A. Common genetic pathways regulate organ-specific infection-related development in the rice blast fungus. Plant Cell 2010, 22(3):953-972. 10.1105/tpc.109.066340, 2861474, 20348434.
    • (2010) Plant Cell , vol.22 , Issue.3 , pp. 953-972
    • Tucker, S.L.1    Besi, M.I.2    Galhano, R.3    Franceschetti, M.4    Goetz, S.5    Lenhert, S.6    Osbourn, A.7    Sesma, A.8
  • 93
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the european molecular biology open software suite
    • 10.1016/S0168-9525(00)02024-2, 10827456
    • Rice P, Longden I, Bleasby A. EMBOSS: the european molecular biology open software suite. Trends Genet 2000, 16(6):276-277. 10.1016/S0168-9525(00)02024-2, 10827456.
    • (2000) Trends Genet , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 94
    • 81555234540 scopus 로고    scopus 로고
    • IAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
    • 10.1186/1471-2105-12-453, 3233632, 22111509
    • Zheng Y, Zhao L, Gao J, Fei Z. iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. BMC Bioinformatics 2011, 12:453. 10.1186/1471-2105-12-453, 3233632, 22111509.
    • (2011) BMC Bioinformatics , vol.12 , pp. 453
    • Zheng, Y.1    Zhao, L.2    Gao, J.3    Fei, Z.4
  • 95
    • 84880434857 scopus 로고    scopus 로고
    • TCW: Transcriptome computational workbench
    • 10.1371/journal.pone.0069401, 3714256, 23874959
    • Soderlund C, Nelson W, Willer M, Gang DR. TCW: Transcriptome computational workbench. PLoS One 2013, 8(7):e69401. 10.1371/journal.pone.0069401, 3714256, 23874959.
    • (2013) PLoS One , vol.8 , Issue.7
    • Soderlund, C.1    Nelson, W.2    Willer, M.3    Gang, D.R.4
  • 96
    • 70349685077 scopus 로고    scopus 로고
    • PAVE: program for assembling and viewing ESTs
    • 10.1186/1471-2164-10-400, 2748094, 19709403
    • Soderlund C, Johnson E, Bomhoff M, Descour A. PAVE: program for assembling and viewing ESTs. BMC Genomics 2009, 10:400. 10.1186/1471-2164-10-400, 2748094, 19709403.
    • (2009) BMC Genomics , vol.10 , pp. 400
    • Soderlund, C.1    Johnson, E.2    Bomhoff, M.3    Descour, A.4
  • 98
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M. In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc 2006, 1(6):2856-2860.
    • (2006) Nat Protoc , vol.1 , Issue.6 , pp. 2856-2860
    • Shevchenko, A.1    Tomas, H.2    Havlis, J.3    Olsen, J.V.4    Mann, M.5
  • 99
    • 33747816814 scopus 로고    scopus 로고
    • Virtual Ribosome - a comprehensive DNA translation tool with support for integration of sequence feature annotation
    • 10.1093/nar/gkl252, 1538826, 16845033
    • Wernersson R. Virtual Ribosome - a comprehensive DNA translation tool with support for integration of sequence feature annotation. Nucleic Acids Res 2006, 34:W385-W388. 10.1093/nar/gkl252, 1538826, 16845033.
    • (2006) Nucleic Acids Res , vol.34
    • Wernersson, R.1
  • 101
    • 48249119082 scopus 로고    scopus 로고
    • PatternLab for proteomics: a tool for differential shotgun proteomics
    • 10.1186/1471-2105-9-316, 2488363, 18644148
    • Carvalho PC, Fischer JS, Chen EI, Yates JR, Barbosa VC. PatternLab for proteomics: a tool for differential shotgun proteomics. BMC Bioinformatics 2008, 9:316. 10.1186/1471-2105-9-316, 2488363, 18644148.
    • (2008) BMC Bioinformatics , vol.9 , pp. 316
    • Carvalho, P.C.1    Fischer, J.S.2    Chen, E.I.3    Yates, J.R.4    Barbosa, V.C.5
  • 102
    • 84863533598 scopus 로고    scopus 로고
    • Improving the TFold test for differential shotgun proteomics
    • 10.1093/bioinformatics/bts247, 3371870, 22539673
    • Carvalho PC, Yates JR, Barbosa VC. Improving the TFold test for differential shotgun proteomics. Bioinformatics 2012, 28(12):1652-1654. 10.1093/bioinformatics/bts247, 3371870, 22539673.
    • (2012) Bioinformatics , vol.28 , Issue.12 , pp. 1652-1654
    • Carvalho, P.C.1    Yates, J.R.2    Barbosa, V.C.3
  • 103
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610, 16081474
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676. 10.1093/bioinformatics/bti610, 16081474.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 104
    • 16344389891 scopus 로고    scopus 로고
    • PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order
    • 10.1093/bioinformatics/bti141, 15546938
    • Caraux G, Pinloche S. PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order. Bioinformatics 2005, 21(7):1280-1281. 10.1093/bioinformatics/bti141, 15546938.
    • (2005) Bioinformatics , vol.21 , Issue.7 , pp. 1280-1281
    • Caraux, G.1    Pinloche, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.