QTL analysis for hybrid sterility and plant height in interspecific populations derived from a wild rice relative, Oryza longistaminata

Breeding Science

Volumn 59, Issue 4, 2009, Pages 441-445

  Chen, Zhiwei ^a,b   Hu, Fengyi ^b   Xu, Peng ^b   Li, Jing ^b   Deng, Xianneng ^b   Zhou, Jiawu ^b   Li, Fei ^c   Chen, Shanna ^a   Tao, Dayun ^b  

^a YUNNAN UNIVERSITY   (China)

^b INSTITUTE OF MEDICINAL PLANTS   (China)

^c YUNNAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Hybrid sterility; Oryza longistaminata; Plant height; Quantitative trait locus (QTL); S1; Sd 1

Indexed keywords

ORYZA LONGISTAMINATA; ORYZA SATIVA; ZIZANIA;

EID: 72449187566     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.59.441     Document Type: Note

References (35)

1. Basten, C.J., B.S. Weir and Z.B. Zeng (1998) QTL CARTOGRAPHER: a reference manual and tutorial for QTL mapping. Department of Statistics, North Carolina State University, Raleigh.
2. Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K.S. Wu, J.H. Xiao, Z.H. Yu, P.C. Ronald, S.E. Harrington et al. (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138: 1251-1274.
3. Doi, K., A. Yoshimura and N. Iwata (1998) RFLP mapping and QTL analysis of heading date and pollen sterility using backcross population between Oryza sativa L. and Oryza glaberrima. Steud. Breed. Sci. 48: 395-399.
4. Doi, K., K. Taguchi and A. Yoshimura (1999) RFLP mapping of S20 and S21 for F1 pollen semi-sterility found in backcross progeny of Oryza sativa and O. glaberrima. Rice Genet. Newsl. 16: 65-68.
5. Duan, S.H., B.R. Lu, Z. Li, J.P. Tong, J. Kong, W. Yan, S.Q. Li and Y.G. Zhu (2007) Phylogenetic analysis of AA-genome Oryza species (Poaceae) based on chloroplast, mitochondrial, and nuclear DNA sequences. Biochem. Genet. 45: 113-129.
6. Heuer, S. and M.M. Kouame (2003) Assessing hybrid sterility in Oryza glaberrima × O. sativa hybrid progenies by PCR marker analysis and crossing with wide compatibility varieties. Theor. Appl. Genet. 107: 902-909.
7. Hu, F.Y., D.Y. Tao, E. Sacks, B.Y. Fu, P. Xu, J. Li, Y. Yang, K. Mcnally, G.S. Khush, A.H. Paterson et al. (2003) Convergent evolution of perenniality in rice and sorghum. Proc. Natl. Acad. Sci. USA 100: 4050-4054.
8. Hu, F.Y., P. Xu, X.N. Deng, J.W. Zhou, J. Li and D.Y. Tao (2006) Molecular mapping of a pollen killer gene S29(t) in Oryza glaberrima and co-linear analysis with S22 in O. glumaepatula. Euphytica 151: 273-278.
9. Koide, Y., K. Onishi, D. Nishimoto, A.R. Baruah, A. Kanazawa and Y. Sano (2008) Sex-independent transmission ratio distortion system responsible for reproductive barriers between Asian and African rice species. New Phytol. 179: 888-900.
10. Kroymann, J. and T. Mitchell-Olds (2005) Epistasis and balanced polymorphism influencing complex trait variation. Nature 435: 95-98.
11. Li, F., F. Hu, P. Xu, J. Li, J.W. Zhou, X.N. Deng and D.Y. Tao (2005) Genetic analysis on interspecific hybrid sterility between Oryza longistaminata and O. sativa. In: Abstracts of 5th International Rice Genetics Symposium, International Rice Research Institute, Manila, p. 131.
12. Li, J., P. Xu, X.N. Deng, J.W. Zhou, F.Y. Hu, J.M. Wan and D.Y. Tao (2008) Identification of four genes for stable hybrid sterility and an epistatic QTL from a cross between Oryza sativa and Oryza glaberrima. Euphytica 164: 699-708.
13. Li, Z., S.R.M. Pinson, A.H. Paterson, W.D. Park and J.W. Stansel (1997) Genetics of hybrid sterility and hybrid breakdown in an intersubspecific rice (Oryza sativa L.) population. Genetics 145: 1139-1148.
14. Lincoln, S., M. Daly and E.S. Lander (1992) Constructing genetic maps with MAPMAKER/EXP3.0, 3rd edn. Technica report, Whitehead Institute.
15. Lorieux, M., M.N. Ndjiondjop and A. Ghesquière (2000) A first interspecific Oryza ativa × Oryza glaberrima microsatellite-based genetic linkage map. Theor. Appl. Genet. 100: 593-601.
16. McCouch, S.R., L. Teytelman, Y.B. Xu, B.K. Lobos, K. Clare, M. Walton, B.Y. Fu, R. Maghirang, Z.K. Li, Y.Z. Xing et al. (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
17. Miyazaki, Y., K. Doi, H. Yasui and A. Yoshimura (2007) Identification of a new allele of F1 pollen sterility gene, S21, detected from the hybrid between Oryza sativa and O. rufipogon. Rice Genet. Newsl. 23: 36-38.
18. Monna, L., N. Kitazawa, R. Yoshino, J. Suzuki, H. Masuda, Y. Maehara, M. Tanji, M. Sato, S. Nasu and Y. Minobe (2002) Positional cloning of rice semidwarfing gene, sd-1: rice "green revolution gene" encodes a mutant enzyme involved in gibberellin synthesis. DNA Res. 9: 11-17.
19. Oka, H.I. (1974) Analysis of genes controlling F1 sterility in rice by the use of isogenic lines. Genetics 77: 521-534.
20. Ren, F.G., B.R. Lu, S. Li, J.Y. Huang and Y.G. Zhu (2003) A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theor. Appl. Genet. 108: 113-120.
21. Sacks, E.J., J.P. Roxas and M.T. Sta. Cruz (2003) Developing perennial upland rice II: field performance of F1 families from an intermated Oryza sativa/O. longistaminata population. Crop Sci. 43: 129-134.
22. Sano, Y. (1983) A new gene controlling sterility in F1 hybrids of two cultivated rice species. J. Hered. 74: 435-439.
23. Sano, Y. (1986) Sterility barriers between Oryza sativa and O. glaberrima. In: International Rice Research Institute (eds.) Rice Genetics, International Rice Research Institute, Manila, pp. 109-118.
24. Sano, Y. (1990) The genetic nature of gamete eliminator in rice. Genetics 125: 183-191.
25. Sano, Y. (1994) Pollen-killers in rice. Jap. J. Breed. 44: 298.
26. Sobrizal, Y.M., P.L. Sanchez, K. Ikeda and A. Yoshimura (2000) Identification of a gene for male gamete abortion in backcross progeny of Oryza sativa and Oryza glumaepatula. Rice Genet. Newsl. 17: 59-61.
27. Song, W.Y., G.L. Wang, L.L. Chen, H.S. Kim, L.Y. Pi, T. Holsten, J. Gardner, B. Wang, W.X. Zhai, L.H. Zhu et al. (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270: 1804-1806.
28. Taguchi-Shiobara, F., T. Yamamoto, M. Yano and S. Oka (2006) Mapping QTLs that control the performance of rice tissue culture and evaluation of derived near-isogenic lines. Theor. Appl. Genet. 112: 968-976.
29. Tanksley, S.D. and J.C. Nelson (1996) Advanced backcross QTL analysis: a method for the simultaneously discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theor. Appl. Genet. 92: 191-203.
30. Tanksley, S.D. and S.R. McCouch (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277: 1063-1066.
31. Tao, D.Y. and P. Sripichitt (2000) Preliminary report on transfer of vegetative propagation from wild rices to O. sativa via distant hybridization and embryo rescue. Kasetsart J. (Nat. Sci.) 34: 1-11.
32. Temnykh, S., W.D. Park, N. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y.G. Cho, T. Ishii and S.R. McCouch (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100: 697-712.
33. Xi, Z.Y., F.H. He, R.Z. Zeng, Z.M. Zhang, X.H. Ding, W.T. Li and G.Q. Zhang (2006) Development of a wide population of chromosome single-segment substitution lines in the genetic background of an elite cultivar of rice (Oryza sativa L.). Genome 49: 476-484.
34. Xiong, L. Z., K.D. Liu, X.K. Dai, C.G. Xu and Q.F. Zhang (1999) Identification of genetic factors controlling domestication-related traits of rice using an F2 population of a cross between Oryza sativa and O. rufipogon. Theor. Appl. Genet. 98: 243-251.
35. Xu, Y., L. Zhu, J. Xiao, N. Ning and S.R. McCouch (1997) Chromosomal region associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred population in rice (Oryza sativa L.). Mol. Gen. Genet. 253: 535-545.