-
1
-
-
78349298242
-
Sensitive detection and quantification of minimal residual disease in chronic myeloid leukaemia using nested quantitative pcr for bcr-abl dna
-
Bartley P, Ross D, Latham S, Martin-Harris M, Budgen B,Wilczek V, Branford S, Hughes T, Morley A. 2010. Sensitive detection and quantification of minimal residual disease in chronic myeloid leukaemia using nested quantitative PCR for BCR-ABL DNA. Int J Lab Hematol 32: e222-e228.
-
(2010)
Int J Lab Hematol
, vol.32
-
-
Bartley, P.1
Ross, D.2
Latham, S.3
Martin-Harris, M.4
Budgen, B.5
Wilczek, V.6
Branford, S.7
Hughes, T.8
Morley, A.9
-
2
-
-
36448997332
-
Optimization of primer design for the detection of variable genomic lesions in cancer
-
Bashir A, Liu Y, Raphael B, Carson D, Bafna V. 2007. Optimization of primer design for the detection of variable genomic lesions in cancer. Bioinformatics 23: 2807-2815.
-
(2007)
Bioinformatics
, vol.23
, pp. 2807-2815
-
-
Bashir, A.1
Liu, Y.2
Raphael, B.3
Carson, D.4
Bafna, V.5
-
3
-
-
77950851118
-
Optimizing pcr assays for dna based cancer diagnostics
-
Bashir A, Lu Q, Carson D, Raphael BJ, Liu YT, Bafna V. 2010. Optimizing PCR assays for DNA based cancer diagnostics. J Comput Biol 17: 369-381.
-
(2010)
J Comput Biol
, vol.17
, pp. 369-381
-
-
Bashir, A.1
Lu, Q.2
Carson, D.3
Raphael, B.J.4
Liu, Y.T.5
Bafna, V.6
-
4
-
-
84866266717
-
Mapping single molecule sequencing reads using basic local alignment with successive refinement (blasr): Application and theory
-
Chaisson MJ, Tesler G. 2012. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): Application and theory. BMC Bioinformatics 13: 238.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 238
-
-
Chaisson, M.J.1
Tesler, G.2
-
5
-
-
69549116107
-
Breakdancer: An algorithm for high-resolution mapping of genomic structural variation
-
Chen K,Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, et al. 2009. BreakDancer: An algorithm for high-resolution mapping of genomic structural variation. Nat Methods 6: 677-681.
-
(2009)
Nat Methods
, vol.6
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
Pohl, C.S.6
McGrath, S.D.7
Wendl, M.C.8
Zhang, Q.9
Locke, D.P.10
-
6
-
-
84875520648
-
Analysis of circulating tumor dna to monitormetastatic breast cancer
-
Dawson S-J, Tsui DW, Murtaza M, Biggs H, Rueda OM, Chin S-F, Dunning MJ, Gale D, Forshew T, Mahler-Araujo B, et al. 2013. Analysis of circulating tumor DNA to monitormetastatic breast cancer. N Engl J Med 368: 1199-1209
-
(2013)
N Engl J Med
, vol.368
, pp. 1199-1209
-
-
Dawson, S.-J.1
Tsui, D.W.2
Murtaza, M.3
Biggs, H.4
Rueda, O.M.5
Chin, S.-F.6
Dunning, M.J.7
Gale, D.8
Forshew, T.9
Mahler-Araujo, B.10
-
7
-
-
0032822953
-
The aml1-eto chimaeric transcription factor in acute myeloid leukaemia: Biology and clinical significance
-
Downing Jr. 1999. The AML1-ETO chimaeric transcription factor in acute myeloid leukaemia: Biology and clinical significance. Br J Haematol 106: 296-308.
-
(1999)
Br J Haematol
, vol.106
, pp. 296-308
-
-
Downing, J.1
-
8
-
-
84869814079
-
Mind the gap: Upgrading genomes with pacific biosciences rs long-read sequencing technology
-
English AC, Richards S, Han Y,Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, et al. 2012. Mind the gap: Upgrading genomes with Pacific Biosciences RS long-read sequencing technology. PLoS ONE 7: e47768.
-
(2012)
PLoS ONE
, vol.7
-
-
English, A.C.1
Richards, S.2
Han, Y.3
Wang, M.4
Vee, V.5
Qu, J.6
Qin, X.7
Muzny, D.M.8
Reid, J.G.9
Worley, K.C.10
-
9
-
-
72649090466
-
Picnic: An algorithm to predict absolute allelic copy number variation with microarray cancer data
-
Greenman C, Bignell G, Butler A, Edkins S, Hinton J, Beare D, Swamy S, Santarius T, Chen L, Widaa S, et al. 2010. PICNIC: An algorithm to predict absolute allelic copy number variation with microarray cancer data. Biostatistics 11: 164-175.
-
(2010)
Biostatistics
, vol.11
, pp. 164-175
-
-
Greenman, C.1
Bignell, G.2
Butler, A.3
Edkins, S.4
Hinton, J.5
Beare, D.6
Swamy, S.7
Santarius, T.8
Chen, L.9
Widaa, S.10
-
10
-
-
59949091427
-
A sequence-level map of chromosomal breakpoints in the mcf-7 breast cancer cell line yields insights into the evolution of a cancer genome
-
Hampton O, Den Hollander P, Miller C, Delgado D, Li J, Coarfa C, Harris R, Richards S, Scherer S, Muzny D, et al. 2009. A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. Genome Res 19: 167-177.
-
(2009)
Genome Res
, vol.19
, pp. 167-177
-
-
Hampton, O.1
Den Hollander, P.2
Miller, C.3
Delgado, D.4
Li, J.5
Coarfa, C.6
Harris, R.7
Richards, S.8
Scherer, S.9
Muzny, D.10
-
11
-
-
84856382664
-
Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines
-
Hampton O, Miller C, Koriabine M, Li J, Den Hollander P, Carbone L, Nefedov M, Ten Hallers B, Lee A, De Jong P, et al. 2011. Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines. Cancer Genet 204: 447-457.
-
(2011)
Cancer Genet
, vol.204
, pp. 447-457
-
-
Hampton, O.1
Miller, C.2
Koriabine, M.3
Li, J.4
Den Hollander, P.5
Carbone, L.6
Nefedov, M.7
Ten Hallers, B.8
Lee, A.9
De Jong, P.10
-
12
-
-
83655211930
-
Detection of low prevalence somatic mutations in solid tumors with ultra-deep targeted sequencing
-
Harismendy O, Schwab R, Bao L, Olson J, Rozenzhak S, Kotsopoulos S, Pond S, Crain B, Chee M, Messer K, et al. 2011. Detection of low prevalence somatic mutations in solid tumors with ultra-deep targeted sequencing. Genome Biol 12: R124.
-
(2011)
Genome Biol
, vol.12
-
-
Harismendy, O.1
Schwab, R.2
Bao, L.3
Olson, J.4
Rozenzhak, S.5
Kotsopoulos, S.6
Pond, S.7
Crain, B.8
Chee, M.9
Messer, K.10
-
13
-
-
80054988291
-
1-Million droplet array with wide-field fluorescence imaging for digital PCR
-
Hatch AC, Fisher JS, Tovar AR, Hsieh AT, Lin R, Pentoney SL, Yang DL, Lee AP. 2011. 1-Million droplet array with wide-field fluorescence imaging for digital PCR. Lab Chip 11: 3838-3845.
-
(2011)
Lab Chip
, vol.11
, pp. 3838-3845
-
-
Hatch, A.C.1
Fisher, J.S.2
Tovar, A.R.3
Hsieh, A.T.4
Lin, R.5
Pentoney, S.L.6
Yang, D.L.7
Lee, A.P.8
-
14
-
-
33644874573
-
The ucsc genome browser database: Update 2006
-
Hinrichs A, Karolchik D, Baertsch R, Barber G, Bejerano G, Clawson H, Diekhans M, Furey T, Harte R, Hsu F, et al. 2006. The UCSC genome browser database: Update 2006. Nucleic Acids Res 34: D590-D598.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Hinrichs, A.1
Karolchik, D.2
Baertsch, R.3
Barber, G.4
Bejerano, G.5
Clawson, H.6
Diekhans, M.7
Furey, T.8
Harte, R.9
Hsu, F.10
-
16
-
-
0036226603
-
Blat: The blast-like alignment tool
-
KentW. 2002. BLAT: The BLAST-like alignment tool. Genome Res 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.1
-
17
-
-
84867276514
-
Effect of 9p21 coronary artery disease locus neighboring genes on atherosclerosis in mice
-
Kim J, Deluna A, Mungrue I, Vu C, Pouldar D, Civelek M, Orozco L, Wu J, Wang X, Charugundla S, et al. 2012. Effect of 9p21 coronary artery disease locus neighboring genes on atherosclerosis in mice. Circulation 126: 1896-1906.
-
(2012)
Circulation
, vol.126
, pp. 1896-1906
-
-
Kim, J.1
Deluna, A.2
Mungrue, I.3
Vu, C.4
Pouldar, D.5
Civelek, M.6
Orozco, L.7
Wu, J.8
Wang, X.9
Charugundla, S.10
-
18
-
-
0343136966
-
Optimization by simulated annealing: Quantitative studies
-
Kirkpatrick S. 1984. Optimization by simulated annealing: Quantitative studies. J Stat Phys 34: 975-986.
-
(1984)
J Stat Phys
, vol.34
, pp. 975-986
-
-
Kirkpatrick, S.1
-
19
-
-
0037195805
-
Prevalent involvement of illegitimate v(d)j recombination in chromosome 9p21 deletions in lymphoid leukemia
-
Kitagawa Y, Inoue K, Sasaki S, Hayashi Y, Matsuo Y, Lieber MR,Mizoguchi H, Yokota J, Kohno T. 2002. Prevalent involvement of illegitimate V(D)J recombination in chromosome 9p21 deletions in lymphoid leukemia. J Biol Chem 277: 46289-46297.
-
(2002)
J Biol Chem
, vol.277
, pp. 46289-46297
-
-
Kitagawa, Y.1
Inoue, K.2
Sasaki, S.3
Hayashi, Y.4
Matsuo, Y.5
Lieber, M.R.6
Mizoguchi, H.7
Yokota, J.8
Kohno, T.9
-
20
-
-
74049093136
-
Nucleotide-resolution analysis of structural variants using breakseq and a breakpoint library
-
Lam H, Mu X, Stutz A, Tanzer A, Cayting P, Snyder M, Kim P, Korbel J, Gerstein M. 2009. Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library. Nat Biotechnol 28: 47-55.
-
(2009)
Nat Biotechnol
, vol.28
, pp. 47-55
-
-
Lam, H.1
Mu, X.2
Stutz, A.3
Tanzer, A.4
Cayting, P.5
Snyder, M.6
Kim, P.7
Korbel, J.8
Gerstein, M.9
-
21
-
-
36448962062
-
A novel approach for determining cancer genomic breakpoints in the presence of normal dna
-
Liu Y, Carson D. 2007. A novel approach for determining cancer genomic breakpoints in the presence of normal DNA. PLoS ONE 2: e380.
-
(2007)
PLoS ONE
, vol.2
-
-
Liu, Y.1
Carson, D.2
-
22
-
-
85027952706
-
Faster sequencers, larger datasets, new challenges
-
Mason C, Elemento O. 2012. Faster sequencers, larger datasets, new challenges. Genome Biol 13: 314.
-
(2012)
Genome Biol
, vol.13
, pp. 314
-
-
Mason, C.1
Elemento, O.2
-
23
-
-
21744462100
-
Dynamics of chronic myeloid leukaemia
-
Michor F, Hughes T, Iwasa Y, Branford S, Shah N, Sawyers C, Nowak M. 2005. Dynamics of chronic myeloid leukaemia. Nature 435: 1267-1270.
-
(2005)
Nature
, vol.435
, pp. 1267-1270
-
-
Michor, F.1
Hughes, T.2
Iwasa, Y.3
Branford, S.4
Shah, N.5
Sawyers, C.6
Nowak, M.7
-
24
-
-
0033990048
-
Primer3 on thewwwfor general users and for biologist programmers
-
Rozen S, Skaletsky H. 2000. Primer3 on theWWWfor general users and for biologist programmers. Methods Mol Biol 132: 365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
25
-
-
0038548179
-
Molecular processes of chromosome 9p21 deletions in human cancers
-
Sasaki S, Kitagawa Y, Sekido Y, Minna JD, Kuwano H, Yokota J, Kohno T. 2003. Molecular processes of chromosome 9p21 deletions in human cancers. Oncogene 22: 3792-3798.
-
(2003)
Oncogene
, vol.22
, pp. 3792-3798
-
-
Sasaki, S.1
Kitagawa, Y.2
Sekido, Y.3
Minna, J.D.4
Kuwano, H.5
Yokota, J.6
Kohno, T.7
-
26
-
-
66349083341
-
A geometric approach for classification and comparison of structural variants
-
Sindi S, Helman E, Bashir A, Raphael B. 2009. A geometric approach for classification and comparison of structural variants. Bioinformatics 25: i222-i230.
-
(2009)
Bioinformatics
, vol.25
-
-
Sindi, S.1
Helman, E.2
Bashir, A.3
Raphael, B.4
-
27
-
-
77951914347
-
Atherosclerosis and cell cycle: Put the brakes on!: Critical role for cyclin-dependent kinase inhibitors?
-
Wessely R. 2010. Atherosclerosis and cell cycle: Put the brakes on!: Critical role for cyclin-dependent kinase inhibitors? J Am Coll Cardiol 55: 2269-2271.
-
(2010)
J Am Coll Cardiol
, vol.55
, pp. 2269-2271
-
-
Wessely, R.1
-
28
-
-
0035195004
-
Molecular characterization of genomic amli-eto fusions in childhood leukemia
-
Xiao Z, Greaves M, Buffler P, Smith M, Segal M, Dicks B,Wiencke J,Wiemels J. 2001. Molecular characterization of genomic AMLI-ETO fusions in childhood leukemia. Leukemia 15: 1906-1913.
-
(2001)
Leukemia
, vol.15
, pp. 1906-1913
-
-
Xiao, Z.1
Greaves, M.2
Buffler, P.3
Smith, M.4
Segal, M.5
Dicks, B.6
Wiencke, J.7
Wiemels, J.8
-
29
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye K, Schulz MH, LongQ, Apweiler R, Ning Z. 2009. Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25: 2865-2871.
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
LongQ Apweiler, R.3
Ning, Z.4
-
30
-
-
77955044283
-
Svdetect: A tool to identify genomic structural variations from paired-end and mate-pair sequencing data
-
Zeitouni B, Boeva V, Janoueix-Lerosey I, Loeillet S, Legoix-Né P, Nicolas A, Delattre O, Barillot E. 2010. SVDetect: A tool to identify genomic structural variations from paired-end and mate-pair sequencing data. Bioinformatics 26: 1895-1896.
-
(2010)
Bioinformatics
, vol.26
, pp. 1895-1896
-
-
Zeitouni, B.1
Boeva, V.2
Janoueix-Lerosey, I.3
Loeillet, S.4
Legoix-Né, P.5
Nicolas, A.6
Delattre, O.7
Barillot, E.8
|