Microdevices for detecting locus-specific DNA methylation at CpG resolution

Biosensors and Bioelectronics

Volumn 56, Issue , 2014, Pages 278-285

  Koo, Kevin M ^a   Wee, Eugene J H ^a   Rauf, Sakandar ^a   Shiddiky, Muhammad J A ^a   Trau, Matt ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Breast cancer cell line; CpG resolution; DNAzyme; Electrocatalytic reaction; Ligase chain reaction; Locus specific DNA methylation

Indexed keywords

ALKYLATION; CELL CULTURE; CELLS; CHEMICAL DETECTION; DISEASES; DNA; ELECTROCATALYSIS; FADING (RADIO); PROBES;

BREAST CANCER CELLS; DNA METHYLATION; DNAZYME; ELECTROCATALYTIC REACTIONS; LIGASE CHAIN REACTIONS;

METHYLATION;

BISULFITE; CYTOSINE; DINUCLEOTIDE; GENOMIC DNA; HEMIN; HYDROGEN PEROXIDE; PEROXIDASE; THYMINE;

ARTICLE; BIOSENSOR; BREAST CANCER; CATALYSIS; CELL LINE; CONTROLLED STUDY; CPG ISLAND; DIAGNOSTIC ACCURACY; DIAGNOSTIC TEST ACCURACY STUDY; DNA METHYLATION; DNA SEQUENCE; ELECTROCHEMISTRY; EQUIPMENT DESIGN; FLUORESCENCE ANALYSIS; GENE LOCUS; GENOME; HUMAN; HUMAN CELL; HYBRIDIZATION; INTERMETHOD COMPARISON; LIGASE CHAIN REACTION; METASTASIS; MICRODEVICE; MOLECULAR PROBE; OXIDATION REDUCTION REACTION; PERFORMANCE; REPRODUCIBILITY; SENSITIVITY ANALYSIS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; SERUM;

BREAST CANCER CELL LINE; CPG RESOLUTION; DNAZYME; ELECTROCATALYTIC REACTION; LIGASE CHAIN REACTION; LOCUS-SPECIFIC DNA METHYLATION;

BASE SEQUENCE; BIOSENSING TECHNIQUES; BREAST NEOPLASMS; CELL LINE, TUMOR; CPG ISLANDS; DNA; DNA METHYLATION; ELECTROCHEMICAL TECHNIQUES; EQUIPMENT DESIGN; FEMALE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; LIGASE CHAIN REACTION; MOLECULAR SEQUENCE DATA; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SULFITES;

EID: 84893621274     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2014.01.029     Document Type: Article

References (45)

1. Benjamin W.H., Smith K.R., Waites K.B. Methods Mol. Biol. 2003, 226:135-150.
2. Bibikova M., Fan J.B. Methods Mol. Biol. 2009, 507:149-163.
3. Cheng X.H., Liu X.J., Bing T., Cao Z.H., Shangguan D.H. Biochemistry 2009, 48:7817-7823.
4. Clark S.J., Statham A., Stirzaker C., Molloy P.L., Frommer M. Nat. Protoc. 2006, 1:2353-2364.
5. Dai Z., Cai T., Zhu W.Y., Gao X.Y., Zou X.Y. Chem. Commun. 2013, 49:1939-1941.
6. Dai Z., Hu X., Wu H., Zou X.Y. Chem. Commun. 2012, 48:1769-1771.
7. Dugast-Darzacq C., Grange T. Methods Mol. Biol. 2009, 507:281-303.
8. Eads C.A., Danenberg K.D., Kawakami K., Saltz L.B., Blake C., Shibata D., Danenberg P.V., Laird P.W. Nucleic Acids Res. 2000, 28.
9. Ehrich M., Nelson M.R., Stanssens P., Zabeau M., Liloglou T., Xinarianos G., Cantor C.R., Field J.K., van den Boom D. Proc. Natl. Acad. Sci. USA 2005, 102:15785-15790.
10. Feinberg A.P., Tycko B. Nat. Rev. Cancer 2004, 4:143-153.
11. Frommer M., McDonald L.E., Millar D.S., Collis C.M., Watt F., Grigg G.W., Molloy P.L., Paul C.L. Proc. Natl. Acad. Sci. USA 1992, 89:1827-1831.
12. Goedecke S., Schlosser S., Muhlisch J., Hempel G., Fruhwald M.C., Wunsch B. Electrophoresis 2009, 30:1412-1417.
13. Guo Q.P., Bao Y.Y., Yang X.H., Wang K.M., Wang Q., Tan Y.Y. Talanta 2010, 83:500-504.
14. Kato D., Goto K., Fujii S., Takatsu A., Hirono S., Niwa O. Anal. Chem. 2011, 83:7595-7599.
15. Kato D., Sekioka N., Ueda A., Kurita R., Hirono S., Suzuki K., Niwa O. J. Am. Chem. Soc. 2008, 130:3716-3717.
16. Kong D.M., Yang W., Wu J., Li C.X., Shen H.X. Analyst 2010, 135:321-326.
17. Korpal M., Lee E.S., Hu G.H., Kang Y.B. J. Biol. Chem. 2008, 283:14910-14914.
18. Kosman J., Juskowiak B. Anal. Chim. Acta 2011, 707:7-17.
19. Li W., Wu P., Zhang H., Cai C. Anal. Chem. 2012, 84:7583-7590.
20. Niazov T., Pavlov V., Xiao Y., Gill R., Willner I. Nano Lett. 2004, 4:1683-1687.
21. Nicoloso M.S., Spizzo R., Shimizu M., Rossi S., Calin G.A. Nat. Rev. Cancer 2009, 9:293-302.
22. Palanisamy R., Connolly A.R., Trau M. Anal. Chem. 2011, 83:2631-2637.
23. Pelossof G., Tel-Vered R., Elbaz J., Willner I. Anal. Chem. 2010, 82:4396-4402.
24. Potapova A., Albat C., Hasemeier B., Haeussler K., Lamprecht S., Suerbaum S., Kreipe H., Lehmann U. BMC Biotechnol. 2011, 11.
25. Rauf S., Shiddiky M.J.A., Trau M., Dimitrov K. RSC Adv. 2013, 3:4189-4192.
26. Robertson K.D. Nat. Rev. Genet. 2005, 6:597-610.
27. Shiddiky M.J.A., Shim Y.B. Anal. Chem. 2007, 79:3724-3733.
28. Soleymani L., Fang Z., Sargent E.H., Kelley S.O. Nat. Nanotechnol. 2009, 4:844-848.
29. Tanaka K., Tainaka K., Kamei T., Okamoto A. J. Am. Chem. Soc. 2007, 129:5612-5620.
30. Tang S., Tong P., Li H., Gu F., Zhang L. Biosens. Bioelectron. 2013, 41:397-402.
31. Travascio P., Li Y.F., Sen D. Chem. Biol. 1998, 5:505-517.
32. Vrba L., Garbe J.C., Stampfer M.R., Futscher B.W. Genome Res. 2011, 21:2026-2037.
33. Wang H.-Q., Liu W.-Y., Wu Z., Tang L.-J., Xu X.-M., Yu R.-Q., Jiang J.-H. Anal. Chem. 2011, 83:1883-1889.
34. Wang P., Chen H.B., Tian J.Y., Dai Z., Zou X.Y. Biosens. Bioelectron. 2013, 45:34-39.
35. Wang P., Mai Z., Dai Z., Zou X. Chem. Commun. 2010, 46:7781-7783.
36. Wang P., Wu H., Dai Z., Zou X.Y. Chem. Commun. 2012, 48:10754-10756.
37. Wang X.L., Song Y.L., Song M.Y., Wang Z.X., Li T., Wang H.L. Anal. Chem. 2009, 81:7885-7891.
38. Wee E.J.H., Shiddiky M.J., Brown M.A., Trau M. Chem. Commun. 2012, 48:12014-12016.
39. Wee E.J.H., Peters K., Nair S.S., Hulf T., Stein S., Wagner S., Bailey P., Lee S.Y., Qu W.J., Brewster B., French J.D., Dobrovic A., Francis G.D., Clark S.J., Brown M.A. Oncogene 2012, 31:4182-4195.
40. Wee E.J.H., Rauf S., Koo K., Shiddiky M.J.A., Trau M. Lab Chip 2013, 13:4385-4391.
41. Wiedmann M., Wilson W.J., Czajka J., Luo J., Barany F., Batt C.A. PCR Methods Appl. 1994, 3:S51-S64.
42. Willner I., Cheglakov Z., Weizmann Y., Sharon E. Analyst 2008, 133:923-927.
43. Willner I., Shlyahovsky B., Zayats M., Willner B. Chem. Soc. Rev. 2008, 37:1153-1165.
44. Zhou L., Du F., Zhao Y., Yameen A., Chen H., Tang Z. Biosens. Bioelectron. 2013, 45:141-147.
45. Zhu D.B., Xing D., Shen X.Y., Liu J.F. Biochem. Biophys. Res. Commun. 2004, 324:964-969.