메뉴 건너뛰기




Volumn 4, Issue AUG, 2013, Pages

A contribution to the study of plant development evolution based on gene co-expression networks

Author keywords

Arabidopsis; Chlamydomonas; Evolution; Gene co expression networks; Photoperiod; Physcomitrella

Indexed keywords


EID: 84893480043     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2013.00291     Document Type: Review
Times cited : (23)

References (93)
  • 1
    • 77950420409 scopus 로고    scopus 로고
    • Seasonal and developmental timing of flowering
    • doi: 10.1111/j.1365-313X.2010.04148.x
    • Amasino, R. (2010). Seasonal and developmental timing of flowering. Plant J. 61, 1001-1013. doi: 10.1111/j.1365-313X.2010.04148.x
    • (2010) Plant J , vol.61 , pp. 1001-1013
    • Amasino, R.1
  • 2
    • 34249697574 scopus 로고    scopus 로고
    • Approaches for extracting practical information from gene coexpression networks in plant biology
    • doi: 10.1093/pcp/pcm013
    • Aoki, K., Ogata, Y., and Shibata, D. (2007). Approaches for extracting practical information from gene coexpression networks in plant biology. Plant Cell Physiol. 48, 381-390. doi: 10.1093/pcp/pcm013
    • (2007) Plant Cell Physiol , vol.48 , pp. 381-390
    • Aoki, K.1    Ogata, Y.2    Shibata, D.3
  • 3
    • 27744446105 scopus 로고    scopus 로고
    • Environmental regulation of flowering
    • doi: 10.1387/ijdb.052022ia
    • Ausín, I., Alonso-Blanco, C., and Martínez-Zapater, J. M. (2005). Environmental regulation of flowering. Int. J. Dev. Biol. 49, 689-705. doi: 10.1387/ijdb.052022ia
    • (2005) Int. J. Dev. Biol , vol.49 , pp. 689-705
    • Ausín, I.1    Alonso-Blanco, C.2    Martínez-Zapater, J.M.3
  • 5
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • doi: 10.1126/science.286.5439.509
    • Barabasi, A., and Albert, R. (1999). Emergence of scaling in random networks. Science 286, 509-512. doi: 10.1126/science.286.5439.509
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.1    Albert, R.2
  • 6
    • 36749083463 scopus 로고    scopus 로고
    • Ohno's dilemma: Evolution of new genes under continuous selection
    • doi: 10.1073/pnas.0707158104
    • Bergthorsson, U., Andersson, D. I., and Roth, J. R. (2007). Ohno's dilemma: evolution of new genes under continuous selection. Proc. Natl. Acad. Sci. U.S.A. 104, 17004-17009. doi: 10.1073/pnas.0707158104
    • (2007) Proc. Natl. Acad. Sci. U.S.A , vol.104 , pp. 17004-17009
    • Bergthorsson, U.1    Andersson, D.I.2    Roth, J.R.3
  • 7
    • 84860864006 scopus 로고    scopus 로고
    • Three acyltrans-ferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas
    • doi: 10.1074/jbc.M111.334052
    • Boyle, N. R., Page, M. D., Liu, B., Blaby, I. K., Casero, D., Kropat, J., et al. (2012). Three acyltrans-ferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas. J. Biol. Chem. 287, 15811-15825. doi: 10.1074/jbc.M111.334052
    • (2012) J. Biol. Chem , vol.287 , pp. 15811-15825
    • Boyle, N.R.1    Page, M.D.2    Liu, B.3    Blaby, I.K.4    Casero, D.5    Kropat, J.6
  • 8
    • 77949481052 scopus 로고    scopus 로고
    • Evaluation of statistical methods for normalization and differential expression in mRNA-seq experiments
    • doi: 10.1186/1471-2105-11-94
    • Bullard, J., Purdom, E., and Hansen, K. S. D. (2010). Evaluation of statistical methods for normalization and differential expression in mRNA-seq experiments. BMC Bioinformatics 11, 1-13. doi: 10.1186/1471-2105-11-94
    • (2010) BMC Bioinformatics , vol.11 , pp. 1-13
    • Bullard, J.1    Purdom, E.2    Hansen, K.S.D.3
  • 9
    • 79957609529 scopus 로고    scopus 로고
    • Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps
    • doi: 10.1105/tpc.111.084400
    • Castruita, M., Casero, D., Karpowicz, S., Kropat, J., Vieler, A., Hsieh, S., et al. (2011). Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps. Plant Cell 23, 1273-1292. doi: 10.1105/tpc.111.084400
    • (2011) Plant Cell , vol.23 , pp. 1273-1292
    • Castruita, M.1    Casero, D.2    Karpowicz, S.3    Kropat, J.4    Vieler, A.5    Hsieh, S.6
  • 10
    • 84861438100 scopus 로고    scopus 로고
    • Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis
    • doi: 10.1073/pnas.1201744109
    • Chen, Y. R., Su, Y. S., and Tu, S. L. (2012). Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 22, 8310-8315. doi: 10.1073/pnas.1201744109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.22 , pp. 8310-8315
    • Chen, Y.R.1    Su, Y.S.2    Tu, S.L.3
  • 11
    • 84875745987 scopus 로고    scopus 로고
    • 2 are also evoked under light in Arabidopsis
    • doi: 10.1093/mp/sss108
    • Cheng, H., Zhang, Q., and Guo, D. (2013). Genes that respond to H2O2 are also evoked under light in Arabidopsis. Mol. Plant 6, 226-228. doi: 10.1093/mp/sss108
    • (2013) Mol. Plant , vol.6 , pp. 226-228
    • Cheng, H.1    Zhang, Q.2    Guo, D.3
  • 12
    • 32944471018 scopus 로고    scopus 로고
    • Over-expression of COL9, a CONSTANS-LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana
    • doi: 10.1111/j.1365-313X.2005.02491.x
    • Cheng, X., and Wang, Z. (2005). Over-expression of COL9, a CONSTANS-LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana. Plant J. 43, 758-768. doi: 10.1111/j.1365-313X.2005.02491.x
    • (2005) Plant J , vol.43 , pp. 758-768
    • Cheng, X.1    Wang, Z.2
  • 13
    • 34249030286 scopus 로고    scopus 로고
    • FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis
    • doi: 10.1126/science.1141752
    • Corbesier, L., Vincent, C., Jang, S., Fornara, F., Fan, Q., Searle, I., et al. (2007). FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis. Science 316, 1030-1033. doi: 10.1126/science.1141752
    • (2007) Science , vol.316 , pp. 1030-1033
    • Corbesier, L.1    Vincent, C.2    Jang, S.3    Fornara, F.4    Fan, Q.5    Searle, I.6
  • 14
    • 43349094507 scopus 로고    scopus 로고
    • The igraph software package for complex network research
    • Csardi, G., and Nepusz, T. (2006). The igraph software package for complex network research. Int. J. Complex Syst. 1695.
    • (2006) Int. J. Complex Syst , pp. 1695
    • Csardi, G.1    Nepusz, T.2
  • 15
    • 84974489639 scopus 로고
    • Genetical and structural analyzes of cell-wall formation in Chlamydomonas reinhardi
    • doi: 10.1017/S0016672300012015
    • Davies, D. R., and Plaskitt, A. (1971). Genetical and structural analyzes of cell-wall formation in Chlamydomonas reinhardi. Genet. Res. 17, 33-43. doi: 10.1017/S0016672300012015
    • (1971) Genet. Res , vol.17 , pp. 33-43
    • Davies, D.R.1    Plaskitt, A.2
  • 16
    • 77954299992 scopus 로고    scopus 로고
    • Agrigo, a GO analysis toolkit for the agricultural community
    • doi: 10.1093/nar/gkq310
    • Du, Z., Zhou, X., Ling, Y., Zhang, Z., and Su, Z. (2010). Agrigo, a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 38, W64-W70. doi: 10.1093/nar/gkq310
    • (2010) Nucleic Acids Res , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 17
    • 60849139395 scopus 로고    scopus 로고
    • GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
    • doi: 10.1186/1471-2105-10-48
    • Eden, E., Navon, R., Steinfeld, I., Lipson, D., and Yakhini, Z. (2009). GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10:48. doi: 10.1186/1471-2105-10-48
    • (2009) BMC Bioinformatics , vol.10 , pp. 48
    • Eden, E.1    Navon, R.2    Steinfeld, I.3    Lipson, D.4    Yakhini, Z.5
  • 18
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • doi: 10.1093/nar/gkh340
    • Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. doi: 10.1093/nar/gkh340
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 19
    • 84861211406 scopus 로고    scopus 로고
    • SINGLET OXYGEN RESISTANT 1 links reactive elec-trophile signaling to singlet oxygen acclimation in Chlamydomonas reinhardtii
    • Fischer, B., Ledford, H., Wakao, S., Huang, S., Casero, D., Pellegrini, M., et al. (2012). SINGLET OXYGEN RESISTANT 1 links reactive elec-trophile signaling to singlet oxygen acclimation in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. U.S.A. 109, E1301-E1311.
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109
    • Fischer, B.1    Ledford, H.2    Wakao, S.3    Huang, S.4    Casero, D.5    Pellegrini, M.6
  • 20
    • 77951903570 scopus 로고    scopus 로고
    • Snapshot: Control of flowering time in Arabidopsis
    • doi: 10.1016/j.cell.2010.04.024
    • Fornara, F., de Montaigu, A., and Coupland, G. (2010). Snapshot: control of flowering time in Arabidopsis. Cell 141, 550. doi: 10.1016/j.cell.2010.04.024
    • (2010) Cell , vol.141 , pp. 550
    • Fornara, F.1    de Montaigu, A.2    Coupland, G.3
  • 21
    • 1342288026 scopus 로고    scopus 로고
    • Affy - analysis of Affymetrix GeneChip data at the probe level
    • doi: 10.1093/bioinformatics/btg405
    • Gautier, L., Cope, L., Bolstad, B. M., and Irizarry, R. A. (2004). affy - analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20, 307-315. doi: 10.1093/bioinformatics/btg405
    • Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.4
  • 22
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • doi: 10.1186/gb-2004-5-10-r80
    • Gentleman, R. C., Carey, V. J., Bates, D. M., Bolstad, B., Dettling, M., Dudoit, S., et al. (2004). Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80. doi: 10.1186/gb-2004-5-10-r80
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5    Dudoit, S.6
  • 24
    • 77955686486 scopus 로고    scopus 로고
    • RNA-Seq Analysis of Sulfur-Deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival
    • doi: 10.1105/tpc.109.071167
    • González-Ballester, D., Casero, C., Cokus, S., Pellegrini, M., Merchant, S. S., and Grossman, A. (2010). RNA-Seq Analysis of Sulfur-Deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival. Plant Cell 22, 2058-2084. doi: 10.1105/tpc.109.071167
    • (2010) Plant Cell , vol.22 , pp. 2058-2084
    • González-Ballester, D.1    Casero, C.2    Cokus, S.3    Pellegrini, M.4    Merchant, S.S.5    Grossman, A.6
  • 25
    • 19044395409 scopus 로고    scopus 로고
    • Functional genomics of the regulation of the Nitrate Assimilation Pathway in Chlamydomonas
    • doi: 10.1104/pp.104.050914
    • González-Ballester, D., de Montaigu, A., Higuera, J. J., Galván, A., and Fernández, E. (2005). Functional genomics of the regulation of the Nitrate Assimilation Pathway in Chlamydomonas. Plant Physiol. 137, 522-533. doi: 10.1104/pp.104.050914
    • (2005) Plant Physiol , vol.137 , pp. 522-533
    • González-Ballester, D.1    de Montaigu, A.2    Higuera, J.J.3    Galván, A.4    Fernández, E.5
  • 26
    • 84856585935 scopus 로고    scopus 로고
    • Phytozome: A comparative platform for green plant genomics
    • doi: 10.1093/nar/gkr944
    • Goodstein, D. M., Shu, S., Howson, R., Neupane, R., Hayes, R. D., Fazo, J., et al. (2012). Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178-D1186. doi: 10.1093/nar/gkr944
    • (2012) Nucleic Acids Res , vol.40
    • Goodstein, D.M.1    Shu, S.2    Howson, R.3    Neupane, R.4    Hayes, R.D.5    Fazo, J.6
  • 27
    • 0037394262 scopus 로고    scopus 로고
    • The evolution of CONSTANS-Like gene families in barley, rice and arabidop-sis
    • doi: 10.1104/pp.102.016188
    • Griffiths, S., Dunford, R. P., Coupland, G., and Laurie, D. A. (2003). The evolution of CONSTANS-Like gene families in barley, rice and arabidop-sis. Plant physiol. 131, 1855-1867. doi: 10.1104/pp.102.016188
    • (2003) Plant Physiol , vol.131 , pp. 1855-1867
    • Griffiths, S.1    Dunford, R.P.2    Coupland, G.3    Laurie, D.A.4
  • 28
    • 34147133691 scopus 로고    scopus 로고
    • Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
    • Gutiérrez, R. A., Lejay, L. V., Dean, A., Chiaromonte, F., Shasha, D. E., and Coruzzi, G. M. (2007). Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis. Genome Biol. 8, R7.
    • (2007) Genome Biol , vol.8
    • Gutiérrez, R.A.1    Lejay, L.V.2    Dean, A.3    Chiaromonte, F.4    Shasha, D.E.5    Coruzzi, G.M.6
  • 30
    • 67749086235 scopus 로고    scopus 로고
    • Over-expression of CONSTANS-LIKE 5 can induce flowering in short-day grown Arabidopsis
    • doi: 10.1007/s00425-009-0958-7
    • Hassidim, M., Harir, Y., Yakir, E., Kron, I., and Green, R. M. (2009). Over-expression of CONSTANS-LIKE 5 can induce flowering in short-day grown Arabidopsis. Planta 230, 481-491. doi: 10.1007/s00425-009-0958-7
    • (2009) Planta , vol.230 , pp. 481-491
    • Hassidim, M.1    Harir, Y.2    Yakir, E.3    Kron, I.4    Green, R.M.5
  • 31
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • doi: 10.1016/j.molcel.2010.05.004
    • Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y. C., Laslo, P., et al. (2010). Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589. doi: 10.1016/j.molcel.2010.05.004
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6
  • 32
    • 74549157153 scopus 로고    scopus 로고
    • Arabidopsis cir-cadian clock and photoperiodism: Time to think about location
    • doi: 10.1016/j.pbi.2009.09.007
    • Imaizumi, T. (2010). Arabidopsis cir-cadian clock and photoperiodism: time to think about location. Curr. Opin. Plant Biol. 13, 83-89. doi: 10.1016/j.pbi.2009.09.007
    • (2010) Curr. Opin. Plant Biol , vol.13 , pp. 83-89
    • Imaizumi, T.1
  • 33
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonu-cleotide array probe level data
    • doi: 10.1093/biostatistics/4.2.249
    • Irizarry, R. A., Hobbs, B., Collin, F., Beazer-Barclay, Y. D., Antonellis, K. J., Scherf, U., et al. (2003). Exploration, normalization, and summaries of high density oligonu-cleotide array probe level data. Biostatistics 4, 249-264. doi: 10.1093/biostatistics/4.2.249
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5    Scherf, U.6
  • 34
    • 80054733290 scopus 로고    scopus 로고
    • Cell identity regulators link development and stress responses in the Arabidopsis root
    • doi: 10.1016/j.devcel.2011.09.009
    • Iyer-Pascuzzi, A. S., Jackson, T., Cui, H., Petricka, J. J., Busch, W., Tsukagoshi, H., et al. (2011). Cell identity regulators link development and stress responses in the Arabidopsis root. Dev. Cell 21, 770-782. doi: 10.1016/j.devcel.2011.09.009
    • (2011) Dev. Cell , vol.21 , pp. 770-782
    • Iyer-Pascuzzi, A.S.1    Jackson, T.2    Cui, H.3    Petricka, J.J.4    Busch, W.5    Tsukagoshi, H.6
  • 35
    • 58249120629 scopus 로고    scopus 로고
    • Plant responses to photoperiod
    • doi: 10.1111/j.1469-8137.2008.02681.x
    • Jackson, S. D. (2009). Plant responses to photoperiod. New Phytol. 181, 517-531. doi: 10.1111/j.1469-8137.2008.02681.x
    • (2009) New Phytol , vol.181 , pp. 517-531
    • Jackson, S.D.1
  • 36
    • 42449119813 scopus 로고    scopus 로고
    • Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response
    • doi: 10.1038/emboj.2008.68
    • Jang, S., Marchal, V., Panigrahi, K. C., Wenkel, S., Soppe, W., Deng, X. W., et al. (2008). Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response. EMBO J. 27, 1277-1288. doi: 10.1038/emboj.2008.68
    • (2008) EMBO J , vol.27 , pp. 1277-1288
    • Jang, S.1    Marchal, V.2    Panigrahi, K.C.3    Wenkel, S.4    Soppe, W.5    Deng, X.W.6
  • 37
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D. T., Taylor, W. R., and Thornton, J. M. (1992). The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8, 275-282.
    • (1992) Comput. Appl. Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 38
    • 73249129047 scopus 로고    scopus 로고
    • The Arabidopsis B-box zinc finger family
    • doi: 10.1105/tpc.109.069088
    • Khanna, R., Kronmiller, B., Maszle, D. R., Coupland, G., Holm, M., Mizuno, T., et al. (2009). The Arabidopsis B-box zinc finger family. Plant Cell 21, 3416-3420. doi: 10.1105/tpc.109.069088
    • (2009) Plant Cell , vol.21 , pp. 3416-3420
    • Khanna, R.1    Kronmiller, B.2    Maszle, D.R.3    Coupland, G.4    Holm, M.5    Mizuno, T.6
  • 39
    • 34548813657 scopus 로고    scopus 로고
    • ZEITLUPE is a circadian photore-ceptor stabilized by GIGANTEA in blue light
    • doi: 10.1038/nature06132
    • Kim, W. Y., Fujiwara, S., Suh, S. S., Kim, J., Kim, Y., Han, L., et al. (2007). ZEITLUPE is a circadian photore-ceptor stabilized by GIGANTEA in blue light. Nature 449, 356-360. doi: 10.1038/nature06132
    • (2007) Nature , vol.449 , pp. 356-360
    • Kim, W.Y.1    Fujiwara, S.2    Suh, S.S.3    Kim, J.4    Kim, Y.5    Han, L.6
  • 40
    • 0016087667 scopus 로고
    • On some principles governing molecular evolution
    • doi: 10.1073/pnas.71.7.2848
    • Kimura, M., and Ohta, T. (1974). On some principles governing molecular evolution. Proc. Natl. Acad. Sci. U.S.A. 71, 2848-2852. doi: 10.1073/pnas.71.7.2848
    • (1974) Proc. Natl. Acad. Sci. U.S.A , vol.71 , pp. 2848-2852
    • Kimura, M.1    Ohta, T.2
  • 41
    • 4243148480 scopus 로고    scopus 로고
    • Authoritative sources in a hyperlinked environment
    • doi: 10.1145/324133.324140
    • Kleinberg, J. (1999). Authoritative sources in a hyperlinked environment. J. ACM 46, 604-632. doi: 10.1145/324133.324140
    • (1999) J. ACM , vol.46 , pp. 604-632
    • Kleinberg, J.1
  • 42
    • 79957616145 scopus 로고    scopus 로고
    • A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas rein-hardtii
    • doi: 10.1111/j.1365-313X.2011.04537.x
    • Kropat, J., Hong-Hermesdorf, A., Casero, D., Ent, P., Castruita, M., Pellegrini, M., et al. (2011). A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas rein-hardtii. Plant J. 66, 770-780. doi: 10.1111/j.1365-313X.2011.04537.x
    • (2011) Plant J , vol.66 , pp. 770-780
    • Kropat, J.1    Hong-Hermesdorf, A.2    Casero, D.3    Ent, P.4    Castruita, M.5    Pellegrini, M.6
  • 43
    • 77952301760 scopus 로고    scopus 로고
    • Inferring the evolutionary history of gene clusters from phylogenetic and gene order data
    • doi: 10.1093/molbev/msp271
    • Lajoie, M., Bertrand, D., and El-Mabrouk, N. (2010). Inferring the evolutionary history of gene clusters from phylogenetic and gene order data. Mol. Biol. Evol. 27, 761-772. doi: 10.1093/molbev/msp271
    • (2010) Mol. Biol. Evol , vol.27 , pp. 761-772
    • Lajoie, M.1    Bertrand, D.2    El-Mabrouk, N.3
  • 44
    • 84860167954 scopus 로고    scopus 로고
    • The arabidopsis E3 Ubiquitin ligase HOS1 negatively regulates CONSTANS abundance in the photoperiodic control of flowering
    • Lázaro, A., Valverde, F., Piñeiro, M., and Jarillo, J. A. (2012). The arabidopsis E3 Ubiquitin ligase HOS1 negatively regulates CONSTANS abundance in the photoperiodic control of flowering. Plant Cell 24, 982-999.
    • (2012) Plant Cell , vol.24 , pp. 982-999
    • Lázaro, A.1    Valverde, F.2    Piñeiro, M.3    Jarillo, J.A.4
  • 45
    • 0035007091 scopus 로고    scopus 로고
    • Analysis of the function of two circadian-regulated CONSTANS-LIKE genes
    • doi: 10.1046/j.1365-313x.2001.01003.x
    • Ledger, S., Strayer, C., Ashton, F., Kay, S. A., and Putterill, J. (2001). Analysis of the function of two circadian-regulated CONSTANS-LIKE genes. Plant J. 26, 15-22. doi: 10.1046/j.1365-313x.2001.01003.x
    • (2001) Plant J , vol.26 , pp. 15-22
    • Ledger, S.1    Strayer, C.2    Ashton, F.3    Kay, S.A.4    Putterill, J.5
  • 46
    • 33750938146 scopus 로고    scopus 로고
    • Preferential duplication in the sparse part of a yeast protein interaction network
    • doi: 10.1093/mol-bev/msl121
    • Li, L., Huang, Y., Xia, X., and Sun, Z. (2006). Preferential duplication in the sparse part of a yeast protein interaction network. Mol. Biol. Evol. 23, 2467-2473. doi: 10.1093/mol-bev/msl121
    • (2006) Mol. Biol. Evol , vol.23 , pp. 2467-2473
    • Li, L.1    Huang, Y.2    Xia, X.3    Sun, Z.4
  • 47
    • 77956819375 scopus 로고    scopus 로고
    • The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots
    • doi: 10.1105/tpc.110.074096
    • Long, T. A., Tsukagoshi, H., Busch, W., Lahner, B., Salt, D. E., and Benfey, P. N. (2010). The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. Plant Cell 22, 2219-2236. doi: 10.1105/tpc.110.074096
    • (2010) Plant Cell , vol.22 , pp. 2219-2236
    • Long, T.A.1    Tsukagoshi, H.2    Busch, W.3    Lahner, B.4    Salt, D.E.5    Benfey, P.N.6
  • 48
    • 34247184185 scopus 로고    scopus 로고
    • Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family
    • doi: 10.1104/pp.106.090761
    • Manfield, I. W., Devlin, P., Jen, C. H., Westhead, D. R., and Gilmartin, P. M. (2007). Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Plant Physiol. 143, 941-958. doi: 10.1104/pp.106.090761
    • (2007) Plant Physiol , vol.143 , pp. 941-958
    • Manfield, I.W.1    Devlin, P.2    Jen, C.H.3    Westhead, D.R.4    Gilmartin, P.M.5
  • 49
    • 3242887157 scopus 로고    scopus 로고
    • CD-Search: Protein domain annotations on the fly
    • doi: 10.1093/nar/gkh454
    • Marchler-Bauer, A., and Bryant, S. H. (2004). CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 1, W327-W331. doi: 10.1093/nar/gkh454
    • (2004) Nucleic Acids Res , vol.1
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 50
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • doi: 10.1038/nrg2626
    • Metzker, M. L. (2010). Sequencing technologies - the next generation. Nat. Rev. Genet. 11, 31-46. doi: 10.1038/nrg2626
    • (2010) Nat. Rev. Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 51
    • 78649786133 scopus 로고    scopus 로고
    • Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism
    • doi: 10.1104/pp.110.165159
    • Miller, R., Wu, G., Deshpande, R., Vieler, A., Gartner, K., Li, X., et al. (2010). Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism. Plant Physiol. 154, 1737-1752. doi: 10.1104/pp.110.165159
    • (2010) Plant Physiol , vol.154 , pp. 1737-1752
    • Miller, R.1    Wu, G.2    Deshpande, R.3    Vieler, A.4    Gartner, K.5    Li, X.6
  • 52
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-seq
    • doi: 10.1038/nmeth.1226
    • Mortazavi, A., Williams, B., McCue, K., Schaer, L., and Wold, B. (2008). Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat. Methods 5, 621-628. doi: 10.1038/nmeth.1226
    • (2008) Nat. Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.2    McCue, K.3    Schaer, L.4    Wold, B.5
  • 53
    • 36248996928 scopus 로고    scopus 로고
    • Evo-devo: Extending the evolutionary synthesis
    • doi: 10.1038/nrg2219
    • Müller, G. B. (2007). Evo-devo: extending the evolutionary synthesis. Nat. Rev. Genet. 8, 943-949. doi: 10.1038/nrg2219
    • (2007) Nat. Rev. Genet , vol.8 , pp. 943-949
    • Müller, G.B.1
  • 54
    • 84867651617 scopus 로고    scopus 로고
    • Real-time evolution of new genes by innovation, amplification, and divergence
    • doi: 10.1126/science.1226521
    • Nasvall, J., Sun, L., Roth, J. R., and Andersson, D. I. (2012). Real-time evolution of new genes by innovation, amplification, and divergence. Science 338, 384-387. doi: 10.1126/science.1226521
    • (2012) Science , vol.338 , pp. 384-387
    • Nasvall, J.1    Sun, L.2    Roth, J.R.3    Andersson, D.I.4
  • 56
    • 33845231723 scopus 로고    scopus 로고
    • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    • doi: 10.1073/pnas.0605938103
    • Oldham, M. C., Horvarth, S., and Geschwind, D. H. (2006). Conservation and evolution of gene coexpression networks in human and chimpanzee brains. Proc. Natl. Acad. Sci. U.S.A. 103, 17973-17978. doi: 10.1073/pnas.0605938103
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , pp. 17973-17978
    • Oldham, M.C.1    Horvarth, S.2    Geschwind, D.H.3
  • 57
    • 77955238011 scopus 로고    scopus 로고
    • Distinct signalling pathways and transcrip-tome response signatures differentiate ammoniumand nitrate-supplied plants
    • Patterson, K., Cakmak, T., Cooper, A., Lager, I., Rasmusson, A. G., and Escobar, M. A. (2010). Distinct signalling pathways and transcrip-tome response signatures differentiate ammoniumand nitrate-supplied plants. Plant Cell Environ. 33, 1486-1501.
    • (2010) Plant Cell Environ , vol.33 , pp. 1486-1501
    • Patterson, K.1    Cakmak, T.2    Cooper, A.3    Lager, I.4    Rasmusson, A.G.5    Escobar, M.A.6
  • 59
    • 0028927730 scopus 로고
    • The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors
    • doi: 10.1016/0092-8674(95)90288-0
    • Putterill, J., Robson, R., Lee, K., Simon, R., and Coupland, G. (1995). The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors. Cell 80, 885-900. doi: 10.1016/0092-8674(95)90288-0
    • (1995) Cell , vol.80 , pp. 885-900
    • Putterill, J.1    Robson, R.2    Lee, K.3    Simon, R.4    Coupland, G.5
  • 60
    • 0000676899 scopus 로고
    • Supervital mutants of Arabidopsis
    • Rédei, G. P. (1962). Supervital mutants of Arabidopsis. Genetics 47, 443-460.
    • (1962) Genetics , vol.47 , pp. 443-460
    • Rédei, G.P.1
  • 62
    • 0035544373 scopus 로고    scopus 로고
    • Functional importance of conserved domains in the flowering-time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants
    • Robson, F., Costa, M. M., Hepworth, S. R., Vizir, I., Piñeiro, M., Reeves, P. H., et al. (2001). Functional importance of conserved domains in the flowering-time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants. Plant J. 28, 619-631.
    • (2001) Plant J , vol.28 , pp. 619-631
    • Robson, F.1    Costa, M.M.2    Hepworth, S.R.3    Vizir, I.4    Piñeiro, M.5    Reeves, P.H.6
  • 63
    • 67650896080 scopus 로고    scopus 로고
    • Evolutionarily conserved photope-riod mechanisms in plants
    • doi: 10.4161/psb.4.7.8975
    • Romero, J. M., and Valverde, F. (2009). Evolutionarily conserved photope-riod mechanisms in plants. Plant Signal. Behav. 4, 642-644. doi: 10.4161/psb.4.7.8975
    • (2009) Plant Signal. Behav , vol.4 , pp. 642-644
    • Romero, J.M.1    Valverde, F.2
  • 64
    • 64549150047 scopus 로고    scopus 로고
    • Amplification efficiency: Linking baseline and bias in the analysis of quantitative PCR data
    • doi: 10.1093/nar/ gkp045
    • Ruijter, J. M., Ramakers, C., Hoogaars, W., Bakker, O., Van Den Hoff, M. J. B., Karlen, Y., et al. (2009). Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data. Nucleic Acids Res. 37, 45. doi: 10.1093/nar/ gkp045
    • (2009) Nucleic Acids Res , vol.37 , pp. 45
    • Ruijter, J.M.1    Ramakers, C.2    Hoogaars, W.3    Bakker, O.4    Van Den Hoff, M.J.B.5    Karlen, Y.6
  • 66
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylo-genetic trees
    • Saitou, N., and Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylo-genetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 67
    • 0034595777 scopus 로고    scopus 로고
    • Distinct roles of CONSTANS target genes in reproductive development of
    • doi: 10.1126/science.288.5471.1613
    • Samach, A., Onouchi, H., Gold, S. E., Ditta, G. S., Schwarz-Sommer, Z., Yanofsky, M. F., et al. (2000). Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. Science 288, 1613-1616. doi: 10.1126/science.288.5471.1613
    • (2000) Arabidopsis. Science , vol.288 , pp. 1613-1616
    • Samach, A.1    Onouchi, H.2    Gold, S.E.3    Ditta, G.S.4    Schwarz-Sommer, Z.5    Yanofsky, M.F.6
  • 68
    • 84873130027 scopus 로고    scopus 로고
    • RNA-seq assembly - are we there yet?
    • doi: 10.3389/fpls.2012.00220
    • Schliesky, S., Gowik, U., Weber, A. P. M., and Bräutigam, A. (2012). RNA-seq assembly - are we there yet? Front. Plant Sci. 3:220. doi: 10.3389/fpls.2012.00220
    • (2012) Front. Plant Sci , vol.3 , pp. 220
    • Schliesky, S.1    Gowik, U.2    Weber, A.P.M.3    Bräutigam, A.4
  • 69
    • 61449140000 scopus 로고    scopus 로고
    • Chlamydomonas CONSTANS and the evolution of plant photoperiodic signalling
    • doi: 10.1016/j.cub.2009.01.044
    • Serrano, G., Herrera-Palau, R., Romero, J. M., Serrano, A., Coupland, G., and Valverde, F. (2009). Chlamydomonas CONSTANS and the evolution of plant photoperiodic signalling. Curr. Biol. 19, 359-368. doi: 10.1016/j.cub.2009.01.044
    • (2009) Curr. Biol , vol.19 , pp. 359-368
    • Serrano, G.1    Herrera-Palau, R.2    Romero, J.M.3    Serrano, A.4    Coupland, G.5    Valverde, F.6
  • 70
    • 14344266043 scopus 로고    scopus 로고
    • Photoperiod-regulated expression of the PpCOL1 gene encoding a homolog of CO/COL proteins in the moss Physcomitrella patens
    • doi: 10.1016/j.bbrc.2004.09.194
    • Shimizu, M., Ichikawa, K., and Aoki, S. (2004). Photoperiod-regulated expression of the PpCOL1 gene encoding a homolog of CO/COL proteins in the moss Physcomitrella patens. Biochem. Biophys. Res. Commun. 324, 1296-1301. doi: 10.1016/j.bbrc.2004.09.194
    • (2004) Biochem. Biophys. Res. Commun , vol.324 , pp. 1296-1301
    • Shimizu, M.1    Ichikawa, K.2    Aoki, S.3
  • 71
    • 0029989377 scopus 로고    scopus 로고
    • Activation of floral meristem identity genes in Arabidopsis
    • doi: 10.1038/384059a0
    • Simon, R., Igeno, I. M., and Coupland, G. (1996). Activation of floral meristem identity genes in Arabidopsis. Nature 384, 59-62. doi: 10.1038/384059a0
    • (1996) Nature , vol.384 , pp. 59-62
    • Simon, R.1    Igeno, I.M.2    Coupland, G.3
  • 72
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • doi: 10.1093/bioinfor-matics/btq675
    • Smoot, M., Ono, K., Ruscheinski, J., Peng-Liang, W., and Ideker, T. (2011). Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27, 431-432. doi: 10.1093/bioinfor-matics/btq675
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.1    Ono, K.2    Ruscheinski, J.3    Peng-Liang, W.4    Ideker, T.5
  • 73
    • 0014202398 scopus 로고
    • Deoxyribonucleic acid replication in meiosis of Chlamydomonas reinhardi
    • doi: 10.1016/0022-2836(67)90278-1
    • Sueoka, N., Chiang, K. S., and Kates, R. J. (1967). Deoxyribonucleic acid replication in meiosis of Chlamydomonas reinhardi. J. Mol. Biol. 25, 47-66. doi: 10.1016/0022-2836(67)90278-1
    • (1967) J. Mol. Biol , vol.25 , pp. 47-66
    • Sueoka, N.1    Chiang, K.S.2    Kates, R.J.3
  • 74
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • doi: 10.1093/molbev/msr121
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739. doi: 10.1093/molbev/msr121
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 75
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. (2000). Gene ontology: tool for the unification of biology. Nat. Genet. 25, 25-29.
    • (2000) Nat. Genet , vol.25 , pp. 25-29
  • 76
    • 77954585787 scopus 로고    scopus 로고
    • The flowering time regulator CONSTANS is recruited to the FLOWERING LOCUS T promoter via a unique cis-element
    • doi: 10.1111/j.1469-8137.2010.03251.x
    • Tiwari, S. B., She, Y., Chang, H.-C., Hou, Y., Harris, A., Ma, S. F., et al. (2010). The flowering time regulator CONSTANS is recruited to the FLOWERING LOCUS T promoter via a unique cis-element. New Phytol. 187, 57-66. doi: 10.1111/j.1469-8137.2010.03251.x
    • (2010) New Phytol , vol.187 , pp. 57-66
    • Tiwari, S.B.1    She, Y.2    Chang, H.-C.3    Hou, Y.4    Harris, A.5    Ma, S.F.6
  • 77
    • 84881317781 scopus 로고    scopus 로고
    • Co-expression and co-responses: Within and beyond transcription
    • doi: 10.3389/fpls.2012.00248
    • Tohge, T., and Fernie, A. R. (2012). Co-expression and co-responses: within and beyond transcription. Front. Plant Sci. 3:248. doi: 10.3389/fpls.2012.00248
    • (2012) Front. Plant Sci , vol.3 , pp. 248
    • Tohge, T.1    Fernie, A.R.2
  • 78
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
    • doi: 10.1038/nbt.1621
    • Trapnell, C. (2010). Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515. doi: 10.1038/nbt.1621
    • (2010) Nat. Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 79
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctios with RNA-seq
    • doi: 10.1093/bioinformatics/btp120
    • Trapnell, C., Patcher, L., and Salzberg, S. (2009). TopHat: discovering splice junctios with RNA-seq. Bioinformatics 25, 1105-1111. doi: 10.1093/bioinformatics/btp120
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Patcher, L.2    Salzberg, S.3
  • 80
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • doi: 10.1038/nprot.2012.016
    • Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., et al. (2012). Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562-578. doi: 10.1038/nprot.2012.016
    • (2012) Nat. Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6
  • 81
    • 84859991534 scopus 로고    scopus 로고
    • Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-L-galactose phosphorylase
    • doi: 10.1074/jbc.M112.341982
    • Urzica, E. I., Adler, L. N., Page, M. D., Linster, C. L., Arbing, M. A., Casero, D., et al. (2012). Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-L-galactose phosphorylase. J. Biol. Chem. 287, 14234-14245. doi: 10.1074/jbc.M112.341982
    • (2012) J. Biol. Chem , vol.287 , pp. 14234-14245
    • Urzica, E.I.1    Adler, L.N.2    Page, M.D.3    Linster, C.L.4    Arbing, M.A.5    Casero, D.6
  • 82
    • 70449115789 scopus 로고    scopus 로고
    • Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
    • doi: 10.1111/j.1365-3040.2009.02040.x
    • Usadel, B., Obayashi, T., Mutwil, M., Giorgi, F. M., Bassel, G. W., Tanimoto, M., et al. (2009). Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ. 32, 1633-1651. doi: 10.1111/j.1365-3040.2009.02040.x
    • (2009) Plant Cell Environ , vol.32 , pp. 1633-1651
    • Usadel, B.1    Obayashi, T.2    Mutwil, M.3    Giorgi, F.M.4    Bassel, G.W.5    Tanimoto, M.6
  • 83
    • 79957485677 scopus 로고    scopus 로고
    • CONSTANS and the evolutionary origin of pho-toperiodic timing of flowering
    • doi: 10.1093/jxb/erq449
    • Valverde, F. (2011). CONSTANS and the evolutionary origin of pho-toperiodic timing of flowering. J. Exp. Bot. 62, 2453-2463. doi: 10.1093/jxb/erq449
    • (2011) J. Exp. Bot , vol.62 , pp. 2453-2463
    • Valverde, F.1
  • 84
    • 1142286356 scopus 로고    scopus 로고
    • Photoreceptor regulation of CONSTANS protein in photoperiodic flowering
    • doi: 10.1126/sci-ence.1091761
    • Valverde, F., Mouradov, A., Soppe, W., Ravenscroft, D., Samach, A., and Coupland, G. (2004). Photoreceptor regulation of CONSTANS protein in photoperiodic flowering. Science 303, 1003-1006. doi: 10.1126/sci-ence.1091761
    • (2004) Science , vol.303 , pp. 1003-1006
    • Valverde, F.1    Mouradov, A.2    Soppe, W.3    Ravenscroft, D.4    Samach, A.5    Coupland, G.6
  • 85
    • 84873519751 scopus 로고    scopus 로고
    • Regulation of Flowering by Trehalose-6-Phosphate Signaling in Arabidopsis thaliana
    • doi: 10.1126/science.1230406
    • Wahl, V., Ponnu, J., Schlereth, A., Arrivault, S., Langenecker, T., Franke, A., et al. (2013). Regulation of Flowering by Trehalose-6-Phosphate Signaling in Arabidopsis thaliana. Science 339, 704-707. doi: 10.1126/science.1230406
    • (2013) Science , vol.339 , pp. 704-707
    • Wahl, V.1    Ponnu, J.2    Schlereth, A.3    Arrivault, S.4    Langenecker, T.5    Franke, A.6
  • 86
    • 0942276880 scopus 로고    scopus 로고
    • Complex networks: Small-world, scale-free, and beyond
    • doi: 10.1109/MCAS.2003.1228503
    • Wang, X. F., and Chen, G. (2003). Complex networks: small-world, scale-free, and beyond. IEEE Circuits Syst. Mag. 3, 6-20. doi: 10.1109/MCAS.2003.1228503
    • (2003) IEEE Circuits Syst. Mag , vol.3 , pp. 6-20
    • Wang, X.F.1    Chen, G.2
  • 87
    • 33845780071 scopus 로고    scopus 로고
    • CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis
    • Wenkel, S., Turck, F., Le Gourrierec, J., Samach, A., and Coupland, G. (2006). CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. Plant Cell 8, 2971-2984.
    • (2006) Plant Cell , vol.8 , pp. 2971-2984
    • Wenkel, S.1    Turck, F.2    Le Gourrierec, J.3    Samach, A.4    Coupland, G.5
  • 89
    • 83455195465 scopus 로고    scopus 로고
    • Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens
    • doi: 10.1186/1471-2229-11-177
    • Xiao, L., Wang, H., Wan, P., Kuang, T., and He, Y. (2011). Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens. BMC Plant Biol. 15:177. doi: 10.1186/1471-2229-11-177
    • (2011) BMC Plant Biol , vol.15 , pp. 177
    • Xiao, L.1    Wang, H.2    Wan, P.3    Kuang, T.4    He, Y.5
  • 90
    • 56849102536 scopus 로고    scopus 로고
    • COP1 and ELF3 control circadian function and photoperi-odic flowering by regulating GI stability
    • doi: 10.1016/j.molcel.2008.09.026
    • Yu, J. W., Rubio, V., Lee, N. Y., Bai, S., Lee, S. Y., Kim, S. S., et al. (2008). COP1 and ELF3 control circadian function and photoperi-odic flowering by regulating GI stability. Mol. Cell 32, 617-630. doi: 10.1016/j.molcel.2008.09.026
    • (2008) Mol. Cell , vol.32 , pp. 617-630
    • Yu, J.W.1    Rubio, V.2    Lee, N.Y.3    Bai, S.4    Lee, S.Y.5    Kim, S.S.6
  • 91
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methyla-tion
    • doi: 10.1126/science.1186366
    • Zemach, A., McDaniel, I. E., Silva, P., and Zilberman, D. (2010). Genome-wide evolutionary analysis of eukaryotic DNA methyla-tion. Science 14, 916-919. doi: 10.1126/science.1186366
    • (2010) Science , vol.14 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 92
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • doi: 10.1016/S0169-5347(03)00033-8
    • Zhang, J. (2003). Evolution by gene duplication: an update. Tre n ds Ecol. Evol. 6, 292-298. doi: 10.1016/S0169-5347(03)00033-8
    • (2003) Tre N Ds Ecol. Evol , vol.6 , pp. 292-298
    • Zhang, J.1
  • 93
    • 20144380171 scopus 로고    scopus 로고
    • The family of CONSTANS-Like genes in Physcomitrella patens
    • doi: 10.1055/s-2005-865621
    • Zobell, O., Coupland, G., and Reiss, B. (2005). The family of CONSTANS-Like genes in Physcomitrella patens. Plant Biol. 7, 266-275. doi: 10.1055/s-2005-865621
    • (2005) Plant Biol , vol.7 , pp. 266-275
    • Zobell, O.1    Coupland, G.2    Reiss, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.