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Volumn 37, Issue 1, 2014, Pages 75-86

Bioinformatics analysis of hemocyte miRNAs of scallop Chlamys farreri against acute viral necrobiotic virus (AVNV)

Author keywords

Acute viral necrobiotic virus; Chlamys farreri; Deep sequencing; Immune response; MiRNA

Indexed keywords

MICRORNA; PRIMER DNA;

EID: 84893453440     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2014.01.002     Document Type: Article
Times cited : (47)

References (53)
  • 1
    • 2542427376 scopus 로고    scopus 로고
    • New research progress on massive mortality of cultured scallop Chlamys farreri
    • Song W.B., Wang C.M., Wang X.H., Li Y., Li J. New research progress on massive mortality of cultured scallop Chlamys farreri. Mar Sci 2001, 25:23-26.
    • (2001) Mar Sci , vol.25 , pp. 23-26
    • Song, W.B.1    Wang, C.M.2    Wang, X.H.3    Li, Y.4    Li, J.5
  • 2
    • 77955021533 scopus 로고    scopus 로고
    • The viral pathogen of massive mortality in Chlamys farreri
    • Wang C.M., Wang X.H., Ai H.X., Li Y., He G.Z., Huang J.Y., et al. The viral pathogen of massive mortality in Chlamys farreri. JFish China 2004, 28:547-553.
    • (2004) JFish China , vol.28 , pp. 547-553
    • Wang, C.M.1    Wang, X.H.2    Ai, H.X.3    Li, Y.4    He, G.Z.5    Huang, J.Y.6
  • 3
    • 32644474747 scopus 로고    scopus 로고
    • Purification and ultrastructure of a spherical virus in cultured scallop Chlamys farreri
    • Wang C.M., Wang X.H., Song X.L., Huang J., Song W.B. Purification and ultrastructure of a spherical virus in cultured scallop Chlamys farreri. JFish China 2002, 26:180-184.
    • (2002) JFish China , vol.26 , pp. 180-184
    • Wang, C.M.1    Wang, X.H.2    Song, X.L.3    Huang, J.4    Song, W.B.5
  • 4
    • 2542487226 scopus 로고    scopus 로고
    • Epidemiological study on massive death of the cultured scallop Chlamys farreri in the Jiaozhou Bay
    • Wang X.H., Wang C.M., Li J., Wang X.H., Zheng G.L., Hu X.Z., et al. Epidemiological study on massive death of the cultured scallop Chlamys farreri in the Jiaozhou Bay. JFish China 2002, 26:149-155.
    • (2002) JFish China , vol.26 , pp. 149-155
    • Wang, X.H.1    Wang, C.M.2    Li, J.3    Wang, X.H.4    Zheng, G.L.5    Hu, X.Z.6
  • 5
    • 77955029360 scopus 로고    scopus 로고
    • Physiological and immune responses of zhikong scallop Chlamys farreri to the acute viral necrobiotic virus infection
    • Tang B.J., Liu B.Z., Wang X.M., Yue X., Xiang J.H. Physiological and immune responses of zhikong scallop Chlamys farreri to the acute viral necrobiotic virus infection. Fish Shellfish Immunol 2010, 29:42-48.
    • (2010) Fish Shellfish Immunol , vol.29 , pp. 42-48
    • Tang, B.J.1    Liu, B.Z.2    Wang, X.M.3    Yue, X.4    Xiang, J.H.5
  • 6
    • 80051957652 scopus 로고    scopus 로고
    • Pathological observation and analysis of acute viral necrobiotic disease in Chlamys farreri
    • Wang C.M., Liu Y.J., Wang X.H., Li Y. Pathological observation and analysis of acute viral necrobiotic disease in Chlamys farreri. Mar Fish Res 2007, 28:1-8.
    • (2007) Mar Fish Res , vol.28 , pp. 1-8
    • Wang, C.M.1    Liu, Y.J.2    Wang, X.H.3    Li, Y.4
  • 7
    • 0142154798 scopus 로고    scopus 로고
    • Preparation of polyclonal antibody of AVND virus and analysis by ELISA technique
    • Wang X.H., He G.Z., Li Y., Wang C.M., Song W.B. Preparation of polyclonal antibody of AVND virus and analysis by ELISA technique. High Tech Lett 2003, 9:84-88.
    • (2003) High Tech Lett , vol.9 , pp. 84-88
    • Wang, X.H.1    He, G.Z.2    Li, Y.3    Wang, C.M.4    Song, W.B.5
  • 8
    • 22044457595 scopus 로고    scopus 로고
    • Monoclonal antibodies developed for detection of an epizootic virus associated with mass mortalities of cultured scallop Chlamys farreri
    • Fu C.L., Song W.B., Li Y. Monoclonal antibodies developed for detection of an epizootic virus associated with mass mortalities of cultured scallop Chlamys farreri. Dis Aquat Org 2005, 65:17-22.
    • (2005) Dis Aquat Org , vol.65 , pp. 17-22
    • Fu, C.L.1    Song, W.B.2    Li, Y.3
  • 10
    • 84875843241 scopus 로고    scopus 로고
    • Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri
    • Ren W.C., Chen H.X., Renault T., Cai Y.Y., Bai C.M., Wang C.M., et al. Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri. Virol J 2013, 10:110.
    • (2013) Virol J , vol.10 , pp. 110
    • Ren, W.C.1    Chen, H.X.2    Renault, T.3    Cai, Y.Y.4    Bai, C.M.5    Wang, C.M.6
  • 11
    • 80053317751 scopus 로고    scopus 로고
    • Development and application of a FQ-PCR assay for detection of Chlamys farreri acute viral necrobiotic virus
    • Ren W.C., Wang C.M., Sun S.C., Cai Y.Y., Li Y. Development and application of a FQ-PCR assay for detection of Chlamys farreri acute viral necrobiotic virus. JFish Sci China 2009, 16:564-571.
    • (2009) JFish Sci China , vol.16 , pp. 564-571
    • Ren, W.C.1    Wang, C.M.2    Sun, S.C.3    Cai, Y.Y.4    Li, Y.5
  • 12
    • 84891487267 scopus 로고    scopus 로고
    • Study on AVNV vertical transmission sensu stricto in scallop Chlamys farreri
    • Yu Z.A., Wang C.M., Li Y., Ren W.C., Cai Y.Y. Study on AVNV vertical transmission sensu stricto in scallop Chlamys farreri. JFish Sci China 2009, 33:1031-1036.
    • (2009) JFish Sci China , vol.33 , pp. 1031-1036
    • Yu, Z.A.1    Wang, C.M.2    Li, Y.3    Ren, W.C.4    Cai, Y.Y.5
  • 13
    • 84891488306 scopus 로고    scopus 로고
    • Detection of acute viral necrosis virus (AVNV) in plankton using FQ-PCR during a molecular epidemiology survey
    • Wang N., Li Y., Cai Y.Y., Ren W.C., Wang C.M. Detection of acute viral necrosis virus (AVNV) in plankton using FQ-PCR during a molecular epidemiology survey. JFish Sci China 2010, 17:1566-1571.
    • (2010) JFish Sci China , vol.17 , pp. 1566-1571
    • Wang, N.1    Li, Y.2    Cai, Y.Y.3    Ren, W.C.4    Wang, C.M.5
  • 14
    • 84891491361 scopus 로고    scopus 로고
    • Studies on phytoplanktons carrying and spreading AVNV
    • Zhang J.Y., Li Y., Ren W.C., Cai Y.Y. Studies on phytoplanktons carrying and spreading AVNV. JFish Sci China 2010, 34:1254-1259.
    • (2010) JFish Sci China , vol.34 , pp. 1254-1259
    • Zhang, J.Y.1    Li, Y.2    Ren, W.C.3    Cai, Y.Y.4
  • 15
    • 84891493080 scopus 로고    scopus 로고
    • Identification by FQ-PCR of AVNV carried by mesoplankton and microplankton at two ocean sites for culturing Chlamys farreri
    • Identification by FQ-PCR of AVNV carried by mesoplankton and microplankton at two ocean sites for culturing Chlamys farreri. JFish Sci China 2011, 18:735-741.
    • (2011) JFish Sci China , vol.18 , pp. 735-741
  • 17
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • Hannon G.J. RNA interference. Nature 2002, 418:244-251.
    • (2002) Nature , vol.418 , pp. 244-251
    • Hannon, G.J.1
  • 18
    • 22144489833 scopus 로고    scopus 로고
    • RNAi: the nuts and bolts of the RISC machine
    • Filipowicz W. RNAi: the nuts and bolts of the RISC machine. Cell 2005, 122:17-20.
    • (2005) Cell , vol.122 , pp. 17-20
    • Filipowicz, W.1
  • 19
    • 26944441255 scopus 로고    scopus 로고
    • Dicing and slicing: the core machinery of the RNA interference pathway
    • Hammond S.M. Dicing and slicing: the core machinery of the RNA interference pathway. FEBS Lett 2005, 579:5822-5829.
    • (2005) FEBS Lett , vol.579 , pp. 5822-5829
    • Hammond, S.M.1
  • 20
  • 21
    • 0027751663 scopus 로고
    • The C.elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee R.C., Feinbaum R.L., Ambros V. The C.elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75:843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 22
    • 50949097481 scopus 로고    scopus 로고
    • An insect virus-encoded microRNA regulates viral replication
    • Hussain M., Taft R.J., Asgari S. An insect virus-encoded microRNA regulates viral replication. JVirol 2008, 82:9164-9170.
    • (2008) JVirol , vol.82 , pp. 9164-9170
    • Hussain, M.1    Taft, R.J.2    Asgari, S.3
  • 23
    • 0034708122 scopus 로고    scopus 로고
    • The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
    • The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 2000, 403:901-906.
    • (2000) Nature , vol.403 , pp. 901-906
  • 24
    • 0037418839 scopus 로고    scopus 로고
    • Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke J., Hipfner D.R., Stark A., Russell R.B., Cohen S.M. Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 2003, 113:25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 25
    • 0037694970 scopus 로고    scopus 로고
    • The Drosophila microRNA mir-14 suppresses cell death and is required for normal fat metabolism
    • Xu P., Vernooy S.Y., Guo M., Hay B.A. The Drosophila microRNA mir-14 suppresses cell death and is required for normal fat metabolism. Curr Biol 2003, 13:790-795.
    • (2003) Curr Biol , vol.13 , pp. 790-795
    • Xu, P.1    Vernooy, S.Y.2    Guo, M.3    Hay, B.A.4
  • 26
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 27
    • 67649885497 scopus 로고    scopus 로고
    • Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
    • Wei Y., Chen S., Yang P., Ma Z., Kang L. Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol 2009, 10:R6.
    • (2009) Genome Biol , vol.10
    • Wei, Y.1    Chen, S.2    Yang, P.3    Ma, Z.4    Kang, L.5
  • 28
    • 79955727264 scopus 로고    scopus 로고
    • Deep sequencing oforgan- and stage-specific microRNAs in the evolutionarily basal insectBlattella germanica (L.) (Dictyoptera, Blattellidae)
    • Cristino A.S., Tanaka E.D., Rubio M., Piulachs M., Belles X. Deep sequencing oforgan- and stage-specific microRNAs in the evolutionarily basal insectBlattella germanica (L.) (Dictyoptera, Blattellidae). PLoS One 2011, 6:e19350.
    • (2011) PLoS One , vol.6
    • Cristino, A.S.1    Tanaka, E.D.2    Rubio, M.3    Piulachs, M.4    Belles, X.5
  • 29
    • 77950343335 scopus 로고    scopus 로고
    • Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair
    • Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair. Nucleic Acids Res 2010, 38:750-763.
    • (2010) Nucleic Acids Res , vol.38 , pp. 750-763
  • 30
    • 84864046897 scopus 로고    scopus 로고
    • Expression profiling invivo demonstrates rapid changes in liver microRNA levels of whitefish (Coregonus lavaretus) following microcystin-LR exposure
    • Brzuzana P., Woźnya M., Wolińskaa L., Piaseckab A. Expression profiling invivo demonstrates rapid changes in liver microRNA levels of whitefish (Coregonus lavaretus) following microcystin-LR exposure. Aquat Toxicol 2012, 122:188-196.
    • (2012) Aquat Toxicol , vol.122 , pp. 188-196
    • Brzuzana, P.1    Woźnya, M.2    Wolińskaa, L.3    Piaseckab, A.4
  • 31
    • 84866901551 scopus 로고    scopus 로고
    • MiR-429 regulation of osmotic stress transcription factor 1 (OSTF1) in tilapia during osmotic stress
    • Yan B., Zhao L.H., Guo J.T., Zhao J.L. miR-429 regulation of osmotic stress transcription factor 1 (OSTF1) in tilapia during osmotic stress. Biochem Biophys Res Commun 2012, 426:294-298.
    • (2012) Biochem Biophys Res Commun , vol.426 , pp. 294-298
    • Yan, B.1    Zhao, L.H.2    Guo, J.T.3    Zhao, J.L.4
  • 32
    • 56549113539 scopus 로고    scopus 로고
    • MicroRNAs and their emerging roles in immunology
    • Pauley K.M., Chan E.K. MicroRNAs and their emerging roles in immunology. Ann N Y Acad Sci 2008, 1143:226-239.
    • (2008) Ann N Y Acad Sci , vol.1143 , pp. 226-239
    • Pauley, K.M.1    Chan, E.K.2
  • 33
    • 20444446357 scopus 로고    scopus 로고
    • SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells
    • Sullivan C.S., Grundhoff A.T., Tevethia S., Pipas J.M., Ganem D. SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells. Nature 2005, 435:682-686.
    • (2005) Nature , vol.435 , pp. 682-686
    • Sullivan, C.S.1    Grundhoff, A.T.2    Tevethia, S.3    Pipas, J.M.4    Ganem, D.5
  • 34
  • 35
    • 79959791910 scopus 로고    scopus 로고
    • Isolation and identification of novel microRNAs from Marsupenaeus japonicus
    • Isolation and identification of novel microRNAs from Marsupenaeus japonicus. Fish Shellfish Immunol 2011, 31:334-340.
    • (2011) Fish Shellfish Immunol , vol.31 , pp. 334-340
  • 36
    • 84855193230 scopus 로고    scopus 로고
    • Identification and comparative analysis of the Eriocheir sinensis microRNA transcriptome response to Spiroplasma eriocheiris infection using a deep sequencing approach
    • Ou J., Meng Q., Li Y., Xiu Y., Du J., Gu W., et al. Identification and comparative analysis of the Eriocheir sinensis microRNA transcriptome response to Spiroplasma eriocheiris infection using a deep sequencing approach. Fish Shellfish Immunol 2012, 32:345-352.
    • (2012) Fish Shellfish Immunol , vol.32 , pp. 345-352
    • Ou, J.1    Meng, Q.2    Li, Y.3    Xiu, Y.4    Du, J.5    Gu, W.6
  • 37
    • 84863219439 scopus 로고    scopus 로고
    • Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing
    • Li C.H., Feng W.D., Qiu L.H., Xia C.G., Su X.R., Jin C.H., et al. Characterization of skin ulceration syndrome associated microRNAs in sea cucumber Apostichopus japonicus by deep sequencing. Fish Shellfish Immunol 2012, 33:436-441.
    • (2012) Fish Shellfish Immunol , vol.33 , pp. 436-441
    • Li, C.H.1    Feng, W.D.2    Qiu, L.H.3    Xia, C.G.4    Su, X.R.5    Jin, C.H.6
  • 38
    • 80053330193 scopus 로고    scopus 로고
    • Hemocyte protein expression profiling of scallop Chlamys farreri response to acute viral necrosis virus (AVNV) infection
    • Chen G.F., Zhang C.Y., Li C.H., Wang C.M., Xu Z., Yan P.S. Hemocyte protein expression profiling of scallop Chlamys farreri response to acute viral necrosis virus (AVNV) infection. Dev Comp Immunol 2011, 35:1135-1146.
    • (2011) Dev Comp Immunol , vol.35 , pp. 1135-1146
    • Chen, G.F.1    Zhang, C.Y.2    Li, C.H.3    Wang, C.M.4    Xu, Z.5    Yan, P.S.6
  • 39
    • 34249772381 scopus 로고
    • Fast folding and comparison of RNA secondary structures
    • Fast folding and comparison of RNA secondary structures. Monatsh Chem 1994, 125:167-188.
    • (1994) Monatsh Chem , vol.125 , pp. 167-188
  • 40
    • 77954330416 scopus 로고    scopus 로고
    • MirTools: microRNA profiling and discovery based on high-throughput sequencing
    • mirTools: microRNA profiling and discovery based on high-throughput sequencing. Nucleic Acids Res 2010, 38:W391-W397.
    • (2010) Nucleic Acids Res , vol.38
  • 41
    • 55949101724 scopus 로고    scopus 로고
    • Variations of enzyme activities in the hemocytes of scallop Chlamys farreri after infection with the acute virus necrobiotic virus (AVNV)
    • Xing J., Lin T.T., Zhan W.B. Variations of enzyme activities in the hemocytes of scallop Chlamys farreri after infection with the acute virus necrobiotic virus (AVNV). Fish Shellfish Immunol 2008, 25:847-852.
    • (2008) Fish Shellfish Immunol , vol.25 , pp. 847-852
    • Xing, J.1    Lin, T.T.2    Zhan, W.B.3
  • 42
    • 77957110766 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs in Clonorchis sinensis of human health significance
    • Xu M.J., Liu Q., Nisbet A.J., Cai X.Q., Yan C., Song H.Q., et al. Identification and characterization of microRNAs in Clonorchis sinensis of human health significance. BMC Genomics 2010, 11:521.
    • (2010) BMC Genomics , vol.11 , pp. 521
    • Xu, M.J.1    Liu, Q.2    Nisbet, A.J.3    Cai, X.Q.4    Yan, C.5    Song, H.Q.6
  • 43
    • 77949470329 scopus 로고    scopus 로고
    • Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    • Skalsky R.L., Vanlandingham D.L., Scholle F., Higgs S., Cullen B.R. Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus. BMC Genomics 2010, 11:119.
    • (2010) BMC Genomics , vol.11 , pp. 119
    • Skalsky, R.L.1    Vanlandingham, D.L.2    Scholle, F.3    Higgs, S.4    Cullen, B.R.5
  • 44
    • 0037370020 scopus 로고    scopus 로고
    • Auniform system for microRNA annotation
    • Auniform system for microRNA annotation. RNA 2003, 9:277-279.
    • (2003) RNA , vol.9 , pp. 277-279
  • 45
    • 84867088834 scopus 로고    scopus 로고
    • The oyster genome reveals stress adaptation and complexity of shell formation
    • The oyster genome reveals stress adaptation and complexity of shell formation. Nature 2012, 490:49-54.
    • (2012) Nature , vol.490 , pp. 49-54
  • 46
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 47
    • 38149071979 scopus 로고    scopus 로고
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res 2007, 17:1850-1864.
    • (2007) Genome Res , vol.17 , pp. 1850-1864
  • 48
    • 77349092849 scopus 로고    scopus 로고
    • Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    • Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC Genomics 2010, 11:52.
    • (2010) BMC Genomics , vol.11 , pp. 52
  • 49
    • 84855437594 scopus 로고    scopus 로고
    • Select microRNAs are essential for early development in the sea urchin
    • Select microRNAs are essential for early development in the sea urchin. Dev Biol 2012, 362:104-113.
    • (2012) Dev Biol , vol.362 , pp. 104-113
  • 50
    • 64249144494 scopus 로고    scopus 로고
    • AmicroRNA imparts robustness against environmental fluctuation during development
    • Li X., Cassidy J.J., Reinke C.A., Fischboeck S., Carthew R.W. AmicroRNA imparts robustness against environmental fluctuation during development. Cell 2009, 137:273-282.
    • (2009) Cell , vol.137 , pp. 273-282
    • Li, X.1    Cassidy, J.J.2    Reinke, C.A.3    Fischboeck, S.4    Carthew, R.W.5
  • 51
    • 70350444738 scopus 로고    scopus 로고
    • MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori)
    • Liu S., Zhang L., Li Q., Zhao P., Duan J., Cheng D., et al. MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori). BMC Genomics 2009, 10:455.
    • (2009) BMC Genomics , vol.10 , pp. 455
    • Liu, S.1    Zhang, L.2    Li, Q.3    Zhao, P.4    Duan, J.5    Cheng, D.6
  • 52
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: small RNAs with a big role in gene regulation
    • He L., Hannon G.J. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 2004, 5:522-531.
    • (2004) Nat Rev Genet , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 53
    • 33645119514 scopus 로고    scopus 로고
    • MicroRNAs direct rapid deadenylation of mRNA
    • Wu L., Fan J., Belasco J.G. MicroRNAs direct rapid deadenylation of mRNA. Proc Natl Acad Sci U S A 2006, 103:4034-4039.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 4034-4039
    • Wu, L.1    Fan, J.2    Belasco, J.G.3


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