-
1
-
-
33344477448
-
Genomics of microRNA
-
Kim, V.N. and Nam, J.W. (2006) Genomics of microRNA. Trends Genet., 22, 165-173.
-
(2006)
Trends Genet
, vol.22
, pp. 165-173
-
-
Kim, V.N.1
Nam, J.W.2
-
2
-
-
18044377963
-
Principles of microRNA-target recognition
-
Brennecke, J., Stark, A., Russell, R.B. and Cohen, S.M. (2005) Principles of microRNA-target recognition. PLoS Biol., 3, e85.
-
(2005)
PLoS Biol
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
3
-
-
33750370444
-
MicroRNA signatures in human cancers
-
Calin, G.A. and Croce, C.M. (2006) MicroRNA signatures in human cancers. Nat. Rev. Cancer, 6, 857-866.
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
4
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu, J., Getz, G., Miska, E.A., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, B.L., Mak, R.H., Ferrando, A.A. et al. (2005) MicroRNA expression profiles classify human cancers. Nature, 435, 834-838.
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
Sweet-Cordero, A.7
Ebert, B.L.8
Mak, R.H.9
Ferrando, A.A.10
-
5
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
He, L. and Hannon, G.J. (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet., 5, 522-531.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
6
-
-
69249147045
-
Expression profiling of microRNAs by deep sequencing
-
Creighton, C.J., Reid, J.G. and Gunaratne, P.H. (2009) Expression profiling of microRNAs by deep sequencing. Brief Bioinform., 10, 490-497.
-
(2009)
Brief Bioinform
, vol.10
, pp. 490-497
-
-
Creighton, C.J.1
Reid, J.G.2
Gunaratne, P.H.3
-
7
-
-
65349094759
-
Computational and analytical framework for small RNA profiling by high-throughput sequencing
-
Fahlgren, N., Sullivan, C.M., Kasschau, K.D., Chapman, E.J., Cumbie, J.S., Montgomery, T.A., Gilbert, S.D., Dasenko, M., Backman, T.W., Givan, S.A. et al. (2009) Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA, 15, 992-1002.
-
(2009)
RNA
, vol.15
, pp. 992-1002
-
-
Fahlgren, N.1
Sullivan, C.M.2
Kasschau, K.D.3
Chapman, E.J.4
Cumbie, J.S.5
Montgomery, T.A.6
Gilbert, S.D.7
Dasenko, M.8
Backman, T.W.9
Givan, S.A.10
-
8
-
-
70449698364
-
Next-generation gap
-
McPherson, J.D. (2009) Next-generation gap. Nat. Methods, 6, S2-S5.
-
(2009)
Nat. Methods
, vol.6
-
-
McPherson, J.D.1
-
9
-
-
77950941484
-
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
-
Horner, D.S., Pavesi, G., Castrignano, T., De Meo, P.D., Liuni, S., Sammeth, M., Picardi, E. and Pesole, G. (2010) Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Brief. Bioinform., 11, 181-197.
-
(2010)
Brief. Bioinform.
, vol.11
, pp. 181-197
-
-
Horner, D.S.1
Pavesi, G.2
Castrignano, T.3
De Meo, P.D.4
Liuni, S.5
Sammeth, M.6
Picardi, E.7
Pesole, G.8
-
10
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander, M.R., Chen, W., Adamidi, C., Maaskola, J., Einspanier, R., Knespel, S. and Rajewsky, N. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol., 26, 407-415.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
11
-
-
70449639806
-
miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression
-
Wang, W.C., Lin, F.M., Chang, W.C., Lin, K.Y., Huang, H.D. and Lin, N.S. (2009) miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. BMC Bioinformatics, 10, 328.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 328
-
-
Wang, W.C.1
Lin, F.M.2
Chang, W.C.3
Lin, K.Y.4
Huang, H.D.5
Lin, N.S.6
-
12
-
-
77951655424
-
SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells
-
Pantano, L., Estivill, X. and Marti, E. (2010) SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells. Nucleic Acids Res., 38, e34.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Pantano, L.1
Estivill, X.2
Marti, E.3
-
13
-
-
67849114241
-
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
-
Hackenberg, M., Sturm, M., Langenberger, D., Falcon-Perez, J.M. and Aransay, A.M. (2009) miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res., 37, W68-W76.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hackenberg, M.1
Sturm, M.2
Langenberger, D.3
Falcon-Perez, J.M.4
Aransay, A.M.5
-
14
-
-
52949088691
-
A toolkit for analysing large-scale plant small RNA datasets
-
Moxon, S., Schwach, F., Dalmay, T., Maclean, D., Studholme, D.J. and Moulton, V. (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24, 2252-2253.
-
(2008)
Bioinformatics
, vol.24
, pp. 2252-2253
-
-
Moxon, S.1
Schwach, F.2
Dalmay, T.3
Maclean, D.4
Studholme, D.J.5
Moulton, V.6
-
15
-
-
75549084786
-
deepBase: a database for deeply annotating and mining deep sequencing data
-
Yang, J.H., Shao, P., Zhou, H., Chen, Y.Q. and Qu, L.H. (2009) deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res., 38, D123-D130.
-
(2009)
Nucleic Acids Res
, vol.38
-
-
Yang, J.H.1
Shao, P.2
Zhou, H.3
Chen, Y.Q.4
Qu, L.H.5
-
16
-
-
67650711615
-
SOAP2: an improved ultrafast tool for short read alignment
-
Li, R., Yu, C., Li, Y., Lam, T.W., Yiu, S.M., Kristiansen, K. and Wang, J. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics, 25, 1966-1967.
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
17
-
-
38549150275
-
miRBase: tools for microRNA genomics
-
Griffiths-Jones, S., Saini, H.K., van Dongen, S. and Enright, A.J. (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res., 36, D154-D158.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Griffiths-Jones, S.1
Saini, H.K.2
van Dongen, S.3
Enright, A.J.4
-
18
-
-
13444252847
-
Rfam: annotating non-coding RNAs in complete genomes
-
Griffiths-Jones, S., Moxon, S., Marshall, M., Khanna, A., Eddy, S.R. and Bateman, A. (2005) Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res., 33, D121-D124.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
19
-
-
63049126614
-
Using RepeatMasker to identify repetitive elements in genomic sequences
-
Chapter 4, Unit 4
-
Tarailo-Graovac, M. and Chen, N. (2009) Using RepeatMasker to identify repetitive elements in genomic sequences. Curr. Protoc. Bioinform., Chapter 4, Unit 4. 108.
-
(2009)
Curr. Protoc. Bioinform.
, pp. 108
-
-
Tarailo-Graovac, M.1
Chen, N.2
-
20
-
-
0030681260
-
The significance of digital gene expression profiles
-
Audic, S. and Claverie, J.M. (1997) The significance of digital gene expression profiles. Genome Res., 7, 986-995.
-
(1997)
Genome Res
, vol.7
, pp. 986-995
-
-
Audic, S.1
Claverie, J.M.2
-
21
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker, I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
22
-
-
70249111111
-
PGA4genomics for comparative genome assembly based on genetic algorithm optimization
-
Zhao, F., Hou, H., Bao, Q. and Wu, J. (2009) PGA4genomics for comparative genome assembly based on genetic algorithm optimization. Genomics, 94, 284-286.
-
(2009)
Genomics
, vol.94
, pp. 284-286
-
-
Zhao, F.1
Hou, H.2
Bao, Q.3
Wu, J.4
-
23
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin, R.D., O'Connor, M.D., Griffith, M., Kuchenbauer, F., Delaney, A., Prabhu, A.L., Zhao, Y., McDonald, H., Zeng, T., Hirst, M. et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res., 18, 610-621.
-
(2008)
Genome Res
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.L.6
Zhao, Y.7
McDonald, H.8
Zeng, T.9
Hirst, M.10
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