메뉴 건너뛰기




Volumn 38, Issue SUPPL. 2, 2010, Pages

MirTools: MicroRNA profiling and discovery based on high-throughput sequencing

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; UNTRANSLATED RNA; MESSENGER RNA;

EID: 77954330416     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq393     Document Type: Article
Times cited : (104)

References (23)
  • 1
    • 33344477448 scopus 로고    scopus 로고
    • Genomics of microRNA
    • Kim, V.N. and Nam, J.W. (2006) Genomics of microRNA. Trends Genet., 22, 165-173.
    • (2006) Trends Genet , vol.22 , pp. 165-173
    • Kim, V.N.1    Nam, J.W.2
  • 3
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • Calin, G.A. and Croce, C.M. (2006) MicroRNA signatures in human cancers. Nat. Rev. Cancer, 6, 857-866.
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 5
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: small RNAs with a big role in gene regulation
    • He, L. and Hannon, G.J. (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet., 5, 522-531.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 6
    • 69249147045 scopus 로고    scopus 로고
    • Expression profiling of microRNAs by deep sequencing
    • Creighton, C.J., Reid, J.G. and Gunaratne, P.H. (2009) Expression profiling of microRNAs by deep sequencing. Brief Bioinform., 10, 490-497.
    • (2009) Brief Bioinform , vol.10 , pp. 490-497
    • Creighton, C.J.1    Reid, J.G.2    Gunaratne, P.H.3
  • 8
    • 70449698364 scopus 로고    scopus 로고
    • Next-generation gap
    • McPherson, J.D. (2009) Next-generation gap. Nat. Methods, 6, S2-S5.
    • (2009) Nat. Methods , vol.6
    • McPherson, J.D.1
  • 11
    • 70449639806 scopus 로고    scopus 로고
    • miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression
    • Wang, W.C., Lin, F.M., Chang, W.C., Lin, K.Y., Huang, H.D. and Lin, N.S. (2009) miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. BMC Bioinformatics, 10, 328.
    • (2009) BMC Bioinformatics , vol.10 , pp. 328
    • Wang, W.C.1    Lin, F.M.2    Chang, W.C.3    Lin, K.Y.4    Huang, H.D.5    Lin, N.S.6
  • 12
    • 77951655424 scopus 로고    scopus 로고
    • SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells
    • Pantano, L., Estivill, X. and Marti, E. (2010) SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells. Nucleic Acids Res., 38, e34.
    • (2010) Nucleic Acids Res , vol.38
    • Pantano, L.1    Estivill, X.2    Marti, E.3
  • 15
    • 75549084786 scopus 로고    scopus 로고
    • deepBase: a database for deeply annotating and mining deep sequencing data
    • Yang, J.H., Shao, P., Zhou, H., Chen, Y.Q. and Qu, L.H. (2009) deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res., 38, D123-D130.
    • (2009) Nucleic Acids Res , vol.38
    • Yang, J.H.1    Shao, P.2    Zhou, H.3    Chen, Y.Q.4    Qu, L.H.5
  • 19
    • 63049126614 scopus 로고    scopus 로고
    • Using RepeatMasker to identify repetitive elements in genomic sequences
    • Chapter 4, Unit 4
    • Tarailo-Graovac, M. and Chen, N. (2009) Using RepeatMasker to identify repetitive elements in genomic sequences. Curr. Protoc. Bioinform., Chapter 4, Unit 4. 108.
    • (2009) Curr. Protoc. Bioinform. , pp. 108
    • Tarailo-Graovac, M.1    Chen, N.2
  • 20
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic, S. and Claverie, J.M. (1997) The significance of digital gene expression profiles. Genome Res., 7, 986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 21
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker, I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 22
    • 70249111111 scopus 로고    scopus 로고
    • PGA4genomics for comparative genome assembly based on genetic algorithm optimization
    • Zhao, F., Hou, H., Bao, Q. and Wu, J. (2009) PGA4genomics for comparative genome assembly based on genetic algorithm optimization. Genomics, 94, 284-286.
    • (2009) Genomics , vol.94 , pp. 284-286
    • Zhao, F.1    Hou, H.2    Bao, Q.3    Wu, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.