Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7T

NeuroImage

Volumn 90, Issue , 2014, Pages 60-73

  Fujimoto, Kyoko ^a   Polimeni, Jonathan R ^a,b   van der Kouwe, André J W ^a,b   Reuter, Martin ^a   Kober, Tobias ^c,d   Benner, Thomas ^a,b   Fischl, Bruce ^a,b,e   Wald, Lawrence L ^a,b,f  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c EPFL   (Switzerland)

^d Siemens Suisse SA   (Switzerland)

^e MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^f MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Brain segmentation; Cortical thickness; FreeSurfer; Quantitative morphometry; Ultra high field MRI

Indexed keywords

BRAIN SEGMENTATION; CORTICAL THICKNESS; FREESURFER; QUANTITATIVE MORPHOMETRY; ULTRA HIGH-FIELD MRI;

BRAIN; BRAIN MAPPING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING;

EID: 84893449073     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.12.012     Document Type: Article

References (50)

1. Barazany D., Assaf Y. Visualization of cortical lamination patterns with magnetic resonance imaging. Cereb. Cortex 2012, 22(9):2016-2023.
2. Cloos M.A., Boulant N., Luong M., Ferrand G., Giacomini E., Hang M.-F., Wiggins C.J., Le Bihan D., Amadon A. Parallel-transmission-enabled magnetization-prepared rapid gradient-echo T1-weighted imaging of the human brain at 7T. NeuroImage 2012, 62(3):2140-2150.
3. Cohen-Adad J., Polimeni J.R., Helmer K.G., Benner T., McNab J.A., Wald L.L., Rosen B.R., Mainero C. T2* mapping and B0 orientation-dependence at 7T reveal cyto- and myeloarchitecture organization of the human cortex. NeuroImage 2012, 60(2):1006-1014.
4. Collins C.M., Liu W., Schreiber W., Yang Q.X., Smith M.B. Central brightening due to constructive interference with, without, and despite dielectric resonance. J. Magn. Reson. Imaging 2005, 21(2):192-196.
5. Dale A.M., Fischl B., Sereno M.I. Cortical surface-based analysis. I. Segmentation and surface reconstruction. NeuroImage 1999, 9(2):179-194.
6. Fischl B. FreeSurfer. NeuroImage 2012, 62(2):774-781.
7. Fischl B., Dale A.M. Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proc. Natl. Acad. Sci. U. S. A. 2000, 97(20):11050-11055.
8. Fischl B., Sereno M.I., Tootell R.B., Dale A.M. High-resolution intersubject averaging and a coordinate system for the cortical surface. Hum. Brain Mapp. 1999, 8(4):272-284.
9. Fischl B., Liu A., Dale A.M. Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex. IEEE Trans. Med. Imaging 2001, 20(1):70-80.
10. Fischl B., Salat D.H., Busa E., Albert M., Dieterich M., Haselgrove C., van der Kouwe A., Killiany R., Kennedy D., Klaveness S., Montillo A., Makris N., Rosen B., Dale A.M. Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain. Neuron 2002, 33(3):341-355.
11. Fischl B., Salat D.H., van der Kouwe A.J.W., Makris N., Ségonne F., Quinn B.T., Dale A.M. Sequence-independent segmentation of magnetic resonance images. NeuroImage 2004, 23(Suppl. 1):S69-S84.
12. Fischl B., van der Kouwe A., Destrieux C., Halgren E., Ségonne F., Salat D.H., Busa E., Seidman L.J., Goldstein J., Kennedy D., Caviness V., Makris N., Rosen B., Dale A.M. Automatically parcellating the human cerebral cortex. Cereb. Cortex 2004, 14(1):11-22.
13. Fujimoto K., Polimeni J.R., van der Kouwe A.J., Kober T., Benner T., Fischl B., Wald L.L., Reuter M. Comparison of cortical surface reconstructions from MP2RAGE data at 3T and 7T. Proc. Int. Soc. Magn. Reson. Med. 2011, 19:130.
14. Fujimoto K., Polimeni J.R., van der Kouwe A.J., Reuter M., Kober T., Benner T., Fischl B., Wald L.L. Comparison of cortical surface reconstructions from MP2RAGE data at 3T and 7T. 17th Annual Meeting of the Organization for Human Brain Mapping 2011.
15. Fujimoto K., Wald L.L., Polimeni J.R. Comparison of cortical surface reconstructions between quantitative T1 and T1-weighted volumetric data. Proc. Int. Soc. Magn. Reson. Med. 2013, 21:950.
16. Geyer S., Weiss M., Reimann K., Lohmann G., Turner R. Microstructural parcellation of the human cerebral cortex -from Brodmann's post-mortem map to in vivo mapping with high-field magnetic resonance imaging. Front. Hum. Neurosci. 2011, 5:19. (February).
17. Han X., Jovicich J., Salat D., van der Kouwe A., Quinn B., Czanner S., Busa E., Pacheco J., Albert M., Killiany R., Maguire P., Rosas D., Makris N., Dale A., Dickerson B., Fischl B. Reliability of MRI-derived measurements of human cerebral cortical thickness: the effects of field strength, scanner upgrade and manufacturer. NeuroImage 2006, 32(1):180-194.
18. Huang R.-S., Chen C., Tran A.T., Holstein K.L., Sereno M.I. Mapping multisensory parietal face and body areas in humans. Proc. Natl. Acad. Sci. U. S. A. 2012, 109(44):18114-18119.
19. Hurley A.C., Al-Radaideh A., Bai L., Aickelin U., Coxon R., Glover P., Gowland P.A. Tailored RF pulse for magnetization inversion at ultrahigh field. Magn. Reson. Med. 2010, 63(1):51-58.
20. Hutsler J.J., Avino T.A. Sigmoid fits to locate and characterize cortical boundaries in human cerebral cortex. J. Neurosci. Methods 2012, 212(2):242-246.
21. Jovicich J., Czanner S., Greve D., Haley E., van der Kouwe A., Gollub R., Kennedy D., Schmitt F., Brown G., Macfall J., Fischl B., Dale A. Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data. NeuroImage 2006, 30(2):436-443.
22. Keil B., Triantafyllou C., Hamm M., Wald L.L. Design optimization of a 32-channel head coil at 7T. Proc. Int. Soc. Magn. Reson. Med. 2010, 18:1493.
23. Kuperberg G.R., Broome M.R., McGuire P.K., David A.S., Eddy M., Ozawa F., Goff D., West W.C., Williams S.C.R., van der Kouwe A.J.W., Salat D.H., Dale A.M., Fischl B. Regionally localized thinning of the cerebral cortex in schizophrenia. Arch. Gen. Psychiatry 2003, 60(9):878-888.
24. Ledden P.J., Mareyam A., Wang S., Van Gelderen P., Duyn J. 32 channel receive-only SENSE array for brain imaging at 7T. Proc. Int. Soc. Magn. Reson. Med. 2007, 15:242.
25. Lüsebrink F., Wollrab A., Speck O. Cortical thickness determination of the human brain using high resolution 3T and 7T MRI data. NeuroImage 2013, 70:122-131.
26. Ly M., Motzkin J.C., Philippi C.L., Kirk G.R., Newman J.P., Kiehl K.A., Koenigs M. Cortical thinning in psychopathy. Am. J. Psychiatr. 2012, 169(7):743-749.
27. Marques J.P., Gruetter R. New developments and applications of the MP2RAGE sequence-focusing the contrast and high spatial resolution R1 mapping. PLoS One 2013, 8(7):e69294.
28. Marques J.P., Kober T., Krueger G., van der Zwaag W., Van de Moortele P.-F., Gruetter R. MP2RAGE, a self bias-field corrected sequence for improved segmentation and T1-mapping at high field. NeuroImage 2010, 49(2):1271-1281.
29. Mugler J.P., Brookeman J.R. Three-dimensional magnetization-prepared rapid gradient-echo imaging (3D MP RAGE). Magn. Reson. Med. 1990, 15(1):152-157.
30. O'Brien K., Krueger G., Lazeyras F., Gruetter R., Roche A. A simple method to denoise MP2RAGE. Proc. Int. Soc. Magn. Reson. Med. 2013, 21:269.
31. Ordidge R.J., Wylezinska M., Hugg J.W., Butterworth E., Franconi F. Frequency offset corrected inversion (FOCI) pulses for use in localized spectroscopy. Magn. Reson. Med. 1996, 36(4):562-566.
32. Polimeni J.R., Fischl B., Greve D.N., Wald L.L. Laminar analysis of 7T BOLD using an imposed spatial activation pattern in human V1. NeuroImage 2010, 52(4):1334-1346.
33. Polimeni J.R., Fischl B.R., Greve D.N., Wald L.L. Laminar-specific functional connectivity: distinguishing directionality in cortical networks. 16th Annual Meeting of the Organization for Human Brain Mapping 2010.
34. Reuter M., Fischl B. Avoiding asymmetry-induced bias in longitudinal image processing. NeuroImage 2011, 57(1):19-21.
35. Reuter M., Rosas H.D., Fischl B. Highly accurate inverse consistent registration: a robust approach. NeuroImage 2010, 53(4):1181-1196.
36. Reuter M., Schmansky N.J., Rosas H.D., Fischl B. Within-subject template estimation for unbiased longitudinal image analysis. NeuroImage 2012, 61(4):1402-1418.
37. Rosas H.D., Liu A.K., Hersch S., Glessner M., Ferrante R.J., Salat D.H., van der Kouwe A., Jenkins B.G., Dale A.M., Fischl B. Regional and progressive thinning of the cortical ribbon in Huntington's disease. Neurology 2002, 58(5):695-701.
38. Salat D.H., Lee S.Y., van der Kouwe A.J., Greve D.N., Fischl B., Rosas H.D. Age-associated alterations in cortical gray and white matter signal intensity and gray to white matter contrast. NeuroImage 2009, 48(1):21-28.
39. Ségonne F., Dale A.M., Busa E., Glessner M., Salat D., Hahn H.K., Fischl B. A hybrid approach to the skull stripping problem in MRI. NeuroImage 2004, 22(3):1060-1075.
40. Setsompop K., Alagappan V., Gagoski B.A., Potthast A., Hebrank F., Fontius U., Schmitt F., Wald L.L., Adalsteinsson E. Broadband slab selection with B1+ mitigation at 7T via parallel spectral-spatial excitation. Magn. Reson. Med. 2009, 61(2):493-500.
41. Sowell E.R., Thompson P.M., Leonard C.M., Welcome S.E., Kan E., Toga A.W. Longitudinal mapping of cortical thickness and brain growth in normal children. J. Neurosci. 2004, 24(38):8223-8231.
42. Tanner M., Gambarota G., Kober T., Krueger G., Erritzoe D., Marques J.P., Newbould R. Fluid and white matter suppression with the MP2RAGE sequence. Journal of Magnetic Resonance Imaging 2012, 35(5):1063-1070.
43. Tisdall M.D., Hess A.T., Reuter M., Meintjes E.M., Fischl B., van der Kouwe A.J.W. Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI. Magn. Reson. Med. 2012, 68(2):389-399.
44. Tisdall M.D., Polimeni J.R., Augustinack J., van der Kouwe A.J.W. 350μm isotropic, high-contrast, low-blur, low-distortion MPRAGE morphometry acquisition at 3T. 19th Annual Meeting of the Organization for Human Brain Mapping 2013.
45. Van de Moortele P.-F., Auerbach E.J., Olman C., Yacoub E., Uǧurbil K., Moeller S. T1 weighted brain images at 7Tesla unbiased for Proton Density, T2* contrast and RF coil receive B1 sensitivity with simultaneous vessel visualization. NeuroImage 2009, 46(2):432-446.
46. van der Kouwe A.J.W., Benner T., Salat D.H., Fischl B. Brain morphometry with multiecho MPRAGE. NeuroImage 2008, 40(2):559-569.
47. Waehnert M., Weiss M., Streicher M., Bazin P.-L., Geyer S., Turner R. Do cortical layers conform to the Laplace equation?. 18th Annual Meeting of the Organization for Human Brain Mapping 2012, 18:MT898.
48. Wald L.L., Wiggins G.C., Potthast A., Wiggins C.J., Triantafyllou C. Design considerations and coil comparisons for 7T brain imaging. Appl. Magn. Reson. 2005, 29(1):19-37.
49. Wiggins G.C., Polimeni J.R., Potthast A., Schmitt M., Alagappan V., Wald L.L.L. 96-Channel receive-only head coil for 3Tesla: design optimization and evaluation. Magn. Reson. Med. 2009, 62(3):754-762.
50. Wrede K.H., Johst S., Dammann P., Umutlu L., Schlamann M.U., Sandalcioglu I.E., Sure U., Ladd M.E., Maderwald S. Caudal image contrast inversion in MPRAGE at 7Tesla: problem and solution. Acad. Radiol. 2012, 19(2):172-178.