Automatically Parcellating the Human Cerebral Cortex

Cerebral Cortex

Volumn 14, Issue 1, 2004, Pages 11-22

  Fischl, Bruce ^a,b,f   Van Der Kouwe, André ^a   Destrieux, Christophe ^c,d   Halgren, Eric ^a   Ségonne, Florent ^b   Salat, David H ^a   Busa, Evelina ^a   Seidman, Larry J ^a,e   Goldstein, Jill ^a   Kennedy, David ^b,f   Caviness, Verne ^e   Makris, Nikos ^f   Rosen, Bruce ^a   Dale, Anders M ^a,b  

^a HARVARD MEDICAL SCHOOL   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c UNIVERSITY HOSPITAL OF TOURS   (France)

^d INSERM   (France)

^e Harvard Inst Psychiat Epidem/G   (United States)

^f MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANISOTROPY; ARTICLE; AUTOMATION; BRAIN CORTEX; COMPARATIVE STUDY; GEOMETRY; MODEL; MORPHOMETRICS; NEUROANATOMY; PREDICTION; PRIORITY JOURNAL; PROBABILITY; SPATIAL DISCRIMINATION; TECHNIQUE; VALIDATION PROCESS;

ALGORITHMS; ANISOTROPY; ARTIFICIAL INTELLIGENCE; BAYES THEOREM; BRAIN MAPPING; CEREBRAL CORTEX; FUNCTIONAL LATERALITY; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MARKOV CHAINS; MODELS, NEUROLOGICAL; MODELS, STATISTICAL; SCHIZOPHRENIA;

EID: 9144254529     PISSN: 10473211     EISSN: None     Source Type: Journal    
DOI: 10.1093/cercor/bhg087     Document Type: Article

References (65)

1. Ashburner J, Neelin P, Collins DL, Evans AC, Friston KJ (1997) Incorporating prior knowledge into image registration. Neuroimage 6:344-352.
2. Bajcsy R, Lieberson R, Reivich M (1983) A computerized system for the elastic matching of deformed radiographic images to idealized atlas images. J Comput Assist Tomogr 5:618-625.
3. Barta P, Pearlson G, McGilchrist I, Lewis ATRW, Pulver A, Vaughn D, Casanova GMF, Powers R (1995) Reversal of asymmetry of the planum temporale in schizophrenia. Am J Psychiatry 152:715-721.
4. Besag J (1974) Spatial interaction and the statistical analysis of lattice systems (with discussion). J R Stat Soc Appl Stat Ser B 36:192-326.
5. Besag J (1986) On the statistical analysis of dirty pictures (with discussion). J R Stat Soc Ser B 48:259-302.
6. Billingsley RL, Schrimsher GW, Jackson EF, Slopis JM, Moore BD III (2002) Significance of planum temporale and planum parietale morphologic features in neurofibromatosis type 1. Arch Neurol 59:616-622.
7. Boling W, Olivier A, Bittar RG, Reutens D (1999) Localization of hand motor activation in Broca's pli de passage moyen. J Neurosurg 91:1-12.
8. Bookstein FL (1989) Principal warps: thin-plate splines and the decomposition of deformations. IEEE Trans Pattern Anal Machine Intell 11:567-585.
9. Caviness VSJ, Meyer J, Makris N, Kennedy DN (1996) MRI-based topographic Parcellation of the human neocortex: an anatomically specified method with estimate of reliability. J Cogn Neurosci 8:566-587.
10. Christensen GE, Rabbitt RD, Miller MI (1996) Deformable templates using large deformation kinematics. IEEE Trans Image Process 5:1435-1447.
11. Collins D, Evans A (1997) Animal: validation and applications of non-linear registration-based segmentation. IJPRAI 11:1271-1294.
12. Collins DL, Neelin P, Peters TM, Evans AC (1994) Data in standardized Talairach space. J Comput Assist Tomogr 18:292-205.
13. Collins DL, Le Boualher G, Benugopal R, Caramanos A, Evans AC, Barillot C (1996) Cortical constraints for non-linear cortical registration. In: Visualization in biomedical computing (Hohne KH, Kikinis R, eds), pp. 307-316. Berlin: Springer.
14. Dale AM, Sereno MI (1993) Improved localization of cortical activity by combining EEG and MEG with MRI cortical surface reconstruction: a linear approach. J Cogn Neurosci 5:162-176.
15. Dale AM, Fischl B, Sereno MI (1999) Cortical surface-based analysis I: segmentation and surface reconstruction. Neuroimage 9:179-194.
16. Destrieux CE, Halgren E, Dale AM, Fischl B, Sereno MI (1998) Variability of the human brain studied on the flattened cortical surface. Soc Neurosci Abstr 24:1164.
17. do Carmo M (1976) Differential geometry of curves and surfaces. Englewood Cliffs, NJ: Prentice-Hall.
18. Duvernoy H (1991) The human brain. Vienna: Springer-Verlag.
19. Fischl B, Dale AM (2000) Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proc Natl Acad Sci USA 97:11044-11049.
20. Fischl B, Liu A, Dale AM (2001) Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex. IEEE Trans Med Imaging 20:70-80.
21. Fischl B, Salat D, Busa E, Albert M, Dieterich M, Haselgrove C, van der Kouwe A, Killiany R, Kennedy D, Klaveness S, et al. (2002) Whole brain segmentation. Automated labeling of neuroanatomical structures in the human brain. Neuron 33:341-355.
22. Fischl B, Sereno MI, Dale AM (1999a) Cortical surface-based analysis ii: inflation, flattening, a surface-based coordinate system. Neuroimage 9:195-207.
23. Fischl B, Sereno MI, Tootell RBH, Dale AM (1999b) High-resolution inter-subject averaging and a coordinate system for the cortical surface. Hum Brain Mapp 8:272-284.
24. Fox PT, Mikiten S, Davis G, Lancaster JL (1994) BrainMap: a database of human functional brain mapping. In: Functional neuroimaging (Thatcher RW, Hallett M, Zeffiro T, John ER, Huerta M, eds), pp. 95-106. San Diego: Academic Press.
25. Gee JC, Haynor DR, Reivich M, Bajcsy R (1994) Finite element approach to warping of brain images. In: Proceedings of SP1E Medical Imaging 1994: Image processing (Loew MH, ed.). Bellingham: SPIE.
26. Geman S, Geman D (1984) Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images. IEEE Trans Pattern Anal Machine Intell 6:721-741.
27. Geschwind N, Levitsky W (1968) Human brain: left-right asymmetries in temporal speech region. Science 161:186-187.
28. Goldstein JM, Goodman JM, Seidman LJ, Kennedy DN, Makris N, Lee H, Tourville J, Caviness VS Jr, Faraone SV, Tsuang MT (1999) Cortical abnormalities in schizophrenia identified by structural magnetic resonance imaging. Arch Gen Psychiatry 56:537-547.
29. Goldstein JM, Seidman LJ, Horton NJ, Makris N, Kennedy DN, Caviness VS Jr, Faraone SV, Tsuang MT (2001) Normal sexual dimorphism of the adult human brain assessed by in vivo magnetic resonance imaging. Cereb Cortex 11:490-497.
30. Goldstein JM, Seidman LJ, O'Brien LM, Horton NJ, Kennedy DN, Makris N, Caviness VS Jr, Faraone SV, Tsuang MT (2002) Impact of normal sexual dimorphisms on sex differences in structural brain abnormalities in schizophrenia assessed by magnetic resonance imaging. Arch Gen Psychiatry 59:154-164.
31. Goualher GZ, Procyk E, Collins DL, Venugopal R, Barillot C, Evans AC (1999) Automated extraction and variability analysis of sulcal neuroanatomy. IEEE Trans Med Imaging 18:206-217.
32. Held K, Kops ER, Krause BJ, Wells WM III, Kikinis R, Muller-Gartner H-W (1997) Markov random field segmentation of brain mr images. IEEE Trans Med Imaging 16:876-886.
33. Hirayasu Y, McCarley RW, Salisbury DF, Tanaka S, Kwon JS, Frumin M, Snyderman D, Yurgelun-Todd D, Kikinis R, Jolesz FA, et al. (2000) Planum temporale and Heschl gyrus volume reduction in schizophrenia - a magnetic resonance imaging study of first-episode patients. Arch Gen Psychiatry 57:692-699.
34. Kapur T, Grimson WEL, Wells WM, Kikinis R (1998) Enhanced spatial priors for segmentation of magnetic resonance imagery. MICCAI'98. 1st International Conference on Medical Image Computing and Computer Assisted Intervention. MIT, Cambridge, MA, October 11-13.
35. Lohmann G (1998) Extracting line representations of sulcal gyral patterns in MR images of the human brain. IEEE Trans Med Imaging 17:1040-1048.
36. Lohmann G, von Cramon DY (1998) Sulcal basins and sulcal strings as new concepts for describing the human cortical topography. IEEE Workshop on BioMedical Image Analysis, June 27-27, Santa Barbara, CA, p. 24.
37. Lohmann G, von Cramon DY (2000) Automatic labelling of the human cortical surface using sulcal basins. Med Image Anal 4:179-188.
38. Lohmann G, von Cramon DY, Steinmetz H (1999) Sulcal variability of twins. Cereb Cortex 9:754-763.
39. Mangin J-F, Frouin V, Bloch I, Regis J, Lopez-Krahe J (1995) From 3-D magnetic resonance images to structured representations of the cortex topography using topology preserving deformations. J Math Imag Vision 5:297-318.
40. Mazziotta JC, Toga AW, Evans AC, Fox P, Lancaster J (1995) A probabilistic atlas of the human brain: theory and rationale for its development. Neuroimage 2:297-318.
41. Miller MI, Christensen GE, Amit Y, Grenander U (1993) A mathematical textbook of deformable neuroanatomies. Proc Natl Acad Sci USA 90:11944-11948.
42. Niznikiewicz M, Donnino R, McCarley RW, Nestor PG, Iosifescu DV, O'Donnell B, Levitt J, Shenton ME (2000) Abnormal angular gyrus asymmetry, in schizophrenia. Am J Psychiatry 157:428-436.
43. Paus T, Otaky N, Caramanos Z, MacDonald D, Zijdenbos A, D'avirro D, Guttmans D, Holmes C, Tomaiuolo F, Evans AC (1996) In vivo morphometry of the intrasulcal gray matter in the human cingulate, paracingulate, and superior-rostral sulci: hemispheric asymmetries, gender differences and probability maps. J Comp Neurol 376:664-673.
44. Rademacher J, Galaburda AM, Kennedy DN, Filipek PA, Caviness VS (1992) Human cerebral cortex: localization, parcellation and morphometry with magnetic resonance imaging. J Cogn Neurosci 4:352-374.
45. Rettmann ME, Han X, Xu C, Prince JL (2002) Automated sulcal segmentation using watersheds on the cortical surface. Neuroimage 15:329-344.
46. Rojas DC, Bawn S, Benkers TL, Reite ML, Rogers SJ (2002) Smaller left hemisphere planum temporale in adults with autistic disorder. Neurosci Lett 328:237-240.
47. Rubens AB, Mahowald MW, Hutton JT (1976) Asymmetry of lateral (sylvian) fissures in man. Neurology 26:620-624.
48. Sandor S, Leahy R (1997) Surface-based labeling of cortical anatomy using a deformable atlas. IEEE Trans Med Imaging 16:41-54.
49. Schlaug G, Jäncke L, Huang YX, Steinmetz H (1995) In vivo evidence of structural brain asymmetry in musicians. Science 267:699-701.
50. Seidman LJ, Faraone SV, Goldstein JM, Goodman JM, Kremen WS, Matsuda G, Hoge EA, Kennedy D, Makris N, Caviness VS, et al. (1997) Reduced subcortical brain volumes in nonpsychotic siblings of schizophrenic patients: a pilot magnetic resonance imaging study. Am J Med Genet 74:507-514.
51. Seidman LJ, Faraone SV, Goldstein JM, Goodman JM, Kremen WS, Toomey R, TourvilIe J, Kennedy D, Makris N, Caviness VS, et al. (1999) Thalamic and amygdala-hippocampal volume reductions in first-degree relatives of patients with schizophrenia: an MRI-based morphometric analysis. Biol Psychiatry 46:941-954.
52. Talairach J, Tournoux P (1988) Co-planar stereotaxic atlas of the human brain. New York: Thieme Medical Publishers.
53. Talairach J, Szikla G, Tournoux P, Prosalentis A, Bordas-Ferrier M, Covello L, Iacob M, Mempel E (1967) Atlas d'anatomie stereotaxique du telencephale. Paris: Masson.
54. Thompson P, Schwartz C, Lin RT, Khan AA, Toga AW (1996a) Three-dimensional statistical analysis of sulcal variability in the human brain. J Neurosci 16:4261-4274.
55. Thompson PM, Schwartz C, Toga AW (1996b) High-resolution random mesh algorithms for creating a probabilistic 3-D surface atlas of the human brain. Neuroimage 3:19-34.
56. Thompson PM, MacDonald D, Mega MS, Holmes CJ, Evans AC, Toga AW (1997) Detection and mapping of abnormal brain structure with a probabilistic atlas of cortical surfaces. J Comput Assist Tomogr 21:567-581.
57. Thompson P, Woods R, Mega M, Toga A (2000) Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain. Hum Brain Mapp 9:81-92.
58. Valiant M, Davatzikos C, Bryan BN (1996) Finding 3-D parametric representations of the deep cortical folds. IEEE Mathematical Methods in Biomedical Image Analysis workshop, San Francisco, CA, June 21-22.
59. Van Essen DC, Drury HA (1997) Structural and functional analyses of human cerebral cortex using a surface-based atlas. J Neurosci 17:7079-7102.
60. Van Essen DC, Drury HA, Joshi S, Miller MI (1998) Functional and structural mapping of human cerebral cortex: solutions are in the surfaces. Proc Natl Acad Sci USA 95:788-795.
61. Vannier MW, Miller MI, Grenander U (1994) Modeling and data structures for registration of a brain atlas of mutimodality - images. In: Functional neuroimaging - technical foundations (Thatcher RW, Hallett M, John ER, Huerta E, eds), pp. 217-221. New York: Academic Press.
62. Witelson SF, Kigar DL (1992) Sylvian fissure morphology and asymmetry in men and women: bilateral differences in relation to handedness in men. J Comp Neurol 323:326-340.
63. Woods RP, Grafton ST, Holmes CJ, Cherry SR, Mazziotta JC (1998) Automated image registration: II., Inter-subject validation of linear and nonlinear models. J Comput Assist Tomogr 22:155-165.
64. Worsley KJ, Evans AC, Marrett S, Neelin P (1992) A three dimensional statistical analysis for CBF activation studies in human brain. J Cereb Blood Flow Metab 12:900-918.
65. Zhang Y, Brady M, Smith S (2001) Segmentation of brain MR images through hidden Markov random field model and the expectation maximization algorithm. IEEE Trans Med Imaging 20:45-57.