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Volumn 46, Issue 3, 2014, Pages 91-103

Next-generation sequencing of microRNAs uncovers expression signatures in polarized macrophages

Author keywords

Macrophage; MicroRNA; Monocyte; Next generation sequencing; Polarization

Indexed keywords

CYTOKINE; MICRORNA; MICRORNA 106B-3P; MICRORNA 132-3P; MICRORNA 146A-5P; MICRORNA 146B-5P; MICRORNA 147B; MICRORNA 150-5P; MICRORNA 155-5P; MICRORNA 193A-5P; MICRORNA 21-5P; MICRORNA 22-3P; MICRORNA 221-3P; MICRORNA 222-3P; MICRORNA 223-5P; MICRORNA 27A-5P; MICRORNA 29B-3P; MICRORNA 335-5P; MICRORNA 339-3P; MICRORNA 34A-5P; MICRORNA 362-3P; MICRORNA 378A-3P; MICRORNA 424-5P; MICRORNA 454-3P; MICRORNA 500A-5P; MICRORNA 502-3P; MICRORNA 629-5P; MICRORNA 93-5P; MICRORNA 99A-5P; MICRORNA 99B-5P; UNCLASSIFIED DRUG;

EID: 84893402227     PISSN: 10948341     EISSN: 15312267     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00140.2013     Document Type: Article
Times cited : (88)

References (59)
  • 1
    • 40049088602 scopus 로고    scopus 로고
    • The inflammatory micro-environment in tumor progression: The role of tumor-associated macrophages
    • Allavena P, Sica A, Solinas G, Porta C, Mantovani A. The inflammatory micro-environment in tumor progression: the role of tumor-associated macrophages. Crit Rev Oncol Hematol 66: 1-9, 2008.
    • (2008) Crit Rev Oncol Hematol , vol.66 , pp. 1-9
    • Allavena, P.1    Sica, A.2    Solinas, G.3    Porta, C.4    Mantovani, A.5
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biol 11: R106, 2010.
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 4
    • 84875765912 scopus 로고    scopus 로고
    • RNA regulation of the immune system
    • Ansel KM. RNA regulation of the immune system. Immunol Rev 253: 5-11, 2013.
    • (2013) Immunol Rev , vol.253 , pp. 5-11
    • Ansel, K.M.1
  • 8
    • 84858722006 scopus 로고    scopus 로고
    • MicroRNAs, new effectors and regulators of NF-kappaB
    • Boldin MP, Baltimore D. MicroRNAs, new effectors and regulators of NF-kappaB. Immunol Rev 246: 205-220, 2012.
    • (2012) Immunol Rev , vol.246 , pp. 205-220
    • Boldin, M.P.1    Baltimore, D.2
  • 9
    • 67650152516 scopus 로고    scopus 로고
    • M1 and M2a polarization of human monocyte-derived macrophages inhibits HIV-1 replication by distinct mechanisms
    • Cassol E, Cassetta L, Rizzi C, Alfano M, Poli G. M1 and M2a polarization of human monocyte-derived macrophages inhibits HIV-1 replication by distinct mechanisms. J Immunol 182: 6237-6246, 2009.
    • (2009) J Immunol , vol.182 , pp. 6237-6246
    • Cassol, E.1    Cassetta, L.2    Rizzi, C.3    Alfano, M.4    Poli, G.5
  • 11
    • 84868291996 scopus 로고    scopus 로고
    • Differential expression of HIV-1 interfering factors in monocyte-derived macrophages stimulated with polarizing cytokines or interferons
    • Cobos Jiménez V, Booiman T, de Taeye SW, van Dort KA, Rits MAN, Hamann J, Kootstra NA. Differential expression of HIV-1 interfering factors in monocyte-derived macrophages stimulated with polarizing cytokines or interferons. Sci Rep 2: 763, 2012.
    • (2012) Sci Rep , vol.2 , pp. 763
    • Cobos Jiménez, V.1    Booiman, T.2    de Taeye, S.W.3    van Dort, K.A.4    Rits, M.A.N.5    Hamann, J.6    Kootstra, N.A.7
  • 12
    • 66349125086 scopus 로고    scopus 로고
    • miR-181a regulates capdependent translation of p27(kip1) mRNA in myeloid cells
    • Cuesta R, Martinez-Sanchez A, Gebauer F. miR-181a regulates capdependent translation of p27(kip1) mRNA in myeloid cells. Mol Cell Biol 29: 2841-2851, 2009.
    • (2009) Mol Cell Biol , vol.29 , pp. 2841-2851
    • Cuesta, R.1    Martinez-Sanchez, A.2    Gebauer, F.3
  • 13
    • 78650484049 scopus 로고    scopus 로고
    • The role of microRNA in inflammatory bowel disease
    • Dalal SR, Kwon JH. The role of microRNA in inflammatory bowel disease. Gastroenterol Hepatol 6: 714-722, 2010.
    • (2010) Gastroenterol Hepatol , vol.6 , pp. 714-722
    • Dalal, S.R.1    Kwon, J.H.2
  • 14
    • 84871193035 scopus 로고    scopus 로고
    • Non-micro-short RNAs: The new kids on the block
    • Dey BK, Mueller AC, Dutta A. Non-micro-short RNAs: the new kids on the block. Mol Biol Cell 23: 4664-4667, 2012.
    • (2012) Mol Biol Cell , vol.23 , pp. 4664-4667
    • Dey, B.K.1    Mueller, A.C.2    Dutta, A.3
  • 15
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of posttranscriptional regulation by microRNAs: Are the answers in sight?
    • Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of posttranscriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9: 102-114, 2008.
    • (2008) Nat Rev Genet , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 17
    • 28544446111 scopus 로고    scopus 로고
    • Monocyte and macrophage heterogeneity
    • Gordon S, Taylor PR. Monocyte and macrophage heterogeneity. Nat Rev Immunol 5: 953-964, 2005.
    • (2005) Nat Rev Immunol , vol.5 , pp. 953-964
    • Gordon, S.1    Taylor, P.R.2
  • 18
    • 84862697885 scopus 로고    scopus 로고
    • Identifying functional microRNAs in macrophages with polarized phenotypes
    • Graff JW, Dickson AM, Clay G, McCaffrey AP, Wilson ME. Identifying functional microRNAs in macrophages with polarized phenotypes. J Biol Chem 287: 21816-21825, 2012.
    • (2012) J Biol Chem , vol.287 , pp. 21816-21825
    • Graff, J.W.1    Dickson, A.M.2    Clay, G.3    McCaffrey, A.P.4    Wilson, M.E.5
  • 19
    • 79952070466 scopus 로고    scopus 로고
    • Virus-encoded microRNAs
    • Grundhoff A, Sullivan CS. Virus-encoded microRNAs. Virology 411: 325-343, 2011.
    • (2011) Virology , vol.411 , pp. 325-343
    • Grundhoff, A.1    Sullivan, C.S.2
  • 20
    • 79251638583 scopus 로고    scopus 로고
    • Serum microRNA characterization identifies miR-885-5p as a potential marker for detecting liver pathologies
    • Gui J, Tian Y, Wen X, Zhang W, Zhang P, Gao J, Run W, Tian L, Jia X, Gao Y. Serum microRNA characterization identifies miR-885-5p as a potential marker for detecting liver pathologies. Clin Sci (Lond) 120: 183-193, 2011.
    • (2011) Clin Sci (Lond) , vol.120 , pp. 183-193
    • Gui, J.1    Tian, Y.2    Wen, X.3    Zhang, W.4    Zhang, P.5    Gao, J.6    Run, W.7    Tian, L.8    Jia, X.9    Gao, Y.10
  • 22
    • 24644483623 scopus 로고    scopus 로고
    • Modulation of hepatitis C virus RNA abundance by a liver-specific microRNA
    • Jopling CL, Yi M, Lancaster AM, Lemon SM, Sarnow P. Modulation of hepatitis C virus RNA abundance by a liver-specific microRNA. Science 309: 1577-1581, 2005.
    • (2005) Science , vol.309 , pp. 1577-1581
    • Jopling, C.L.1    Yi, M.2    Lancaster, A.M.3    Lemon, S.M.4    Sarnow, P.5
  • 24
    • 0028075890 scopus 로고
    • Interference of interleukin-10 with human immunodeficiency virus type 1 replication in primary monocyte-derived macrophages
    • Kootstra NA, van't Wout A, Huisman HG, Miedema F, Schuitemaker H. Interference of interleukin-10 with human immunodeficiency virus type 1 replication in primary monocyte-derived macrophages. J Virol 68: 6967-6975, 1994.
    • (1994) J Virol , vol.68 , pp. 6967-6975
    • Kootstra, N.A.1    van't Wout, A.2    Huisman, H.G.3    Miedema, F.4    Schuitemaker, H.5
  • 25
    • 0024478347 scopus 로고
    • Interferons and bacterial lipopolysaccharide protect macrophages from productive infection by human immunodeficiency virus in vitro
    • Kornbluth RS, Oh PS, Munis JR, Cleveland PH, Richman DD. Interferons and bacterial lipopolysaccharide protect macrophages from productive infection by human immunodeficiency virus in vitro. J Exp Med 169: 1137-1151, 1989.
    • (1989) J Exp Med , vol.169 , pp. 1137-1151
    • Kornbluth, R.S.1    Oh, P.S.2    Munis, J.R.3    Cleveland, P.H.4    Richman, D.D.5
  • 26
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 27
    • 84893430401 scopus 로고    scopus 로고
    • Microvesicle microRNA profiles and functional roles between chronic hepatitis B and hepatocellular carcinoma
    • [Epub ahead of print]
    • Li H, Sun L, Chen X, Xiong W, Hu D, Jie S. Microvesicle microRNA profiles and functional roles between chronic hepatitis B and hepatocellular carcinoma. Clin Transl Oncol [Epub ahead of print].
    • Clin Transl Oncol
    • Li, H.1    Sun, L.2    Chen, X.3    Xiong, W.4    Hu, D.5    Jie, S.6
  • 28
    • 77955924350 scopus 로고    scopus 로고
    • MicroRNAs modulate the noncanonical transcription factor NF-kappaB pathway by regulating expression of the kinase IKKalpha during macrophage differentiation
    • Li T, Morgan MJ, Choksi S, Zhang Y, Kim YS, Liu ZG. MicroRNAs modulate the noncanonical transcription factor NF-kappaB pathway by regulating expression of the kinase IKKalpha during macrophage differentiation. Nat Immunol 11: 799-805, 2010.
    • (2010) Nat Immunol , vol.11 , pp. 799-805
    • Li, T.1    Morgan, M.J.2    Choksi, S.3    Zhang, Y.4    Kim, Y.S.5    Liu, Z.G.6
  • 29
    • 84873149944 scopus 로고    scopus 로고
    • Competing and noncompeting activities of miR-122 and the 5= exonuclease Xrn1 in regulation of hepatitis C virus replication
    • Li Y, Masaki T, Yamane D, McGivern DR, Lemon SM. Competing and noncompeting activities of miR-122 and the 5= exonuclease Xrn1 in regulation of hepatitis C virus replication. Proc Natl Acad Sci USA 110: 1881-1886, 2013.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 1881-1886
    • Li, Y.1    Masaki, T.2    Yamane, D.3    McGivern, D.R.4    Lemon, S.M.5
  • 30
    • 70349439320 scopus 로고    scopus 로고
    • miR-147, a microRNA that is induced upon Toll-like receptor stimulation, regulates murine macrophage inflammatory responses
    • Liu G, Friggeri A, Yang Y, Park YJ, Tsuruta Y, Abraham E. miR-147, a microRNA that is induced upon Toll-like receptor stimulation, regulates murine macrophage inflammatory responses. Proc Natl Acad Sci USA 106: 15819-15824, 2009.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 15819-15824
    • Liu, G.1    Friggeri, A.2    Yang, Y.3    Park, Y.J.4    Tsuruta, Y.5    Abraham, E.6
  • 31
    • 33750813483 scopus 로고    scopus 로고
    • Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: New molecules and patterns of gene expression
    • Martinez FO, Gordon S, Locati M, Mantovani A. Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: new molecules and patterns of gene expression. J Immunol 177: 7303-7311, 2006.
    • (2006) J Immunol , vol.177 , pp. 7303-7311
    • Martinez, F.O.1    Gordon, S.2    Locati, M.3    Mantovani, A.4
  • 32
    • 67650485985 scopus 로고    scopus 로고
    • Alternative activation of macrophages: An immunologic functional perspective
    • Martinez FO, Helming L, Gordon S. Alternative activation of macrophages: an immunologic functional perspective. Annu Rev Immunol 27: 451-483, 2009.
    • (2009) Annu Rev Immunol , vol.27 , pp. 451-483
    • Martinez, F.O.1    Helming, L.2    Gordon, S.3
  • 34
    • 0030818069 scopus 로고    scopus 로고
    • IL-13 acts on macrophages to block the completion of reverse transcription, inhibit virus production, and reduce virus infectivity
    • Montaner LJ, Bailer RT, Gordon S. IL-13 acts on macrophages to block the completion of reverse transcription, inhibit virus production, and reduce virus infectivity. J Leukoc Biol 62: 126-132, 1997.
    • (1997) J Leukoc Biol , vol.62 , pp. 126-132
    • Montaner, L.J.1    Bailer, R.T.2    Gordon, S.3
  • 35
    • 0028643585 scopus 로고
    • Interleukin 10 inhibits initial reverse transcription of human immunodeficiency virus type 1 and mediates a virostatic latent state in primary blood-derived human macrophages in vitro
    • Montaner LJ, Griffin P, Gordon S. Interleukin 10 inhibits initial reverse transcription of human immunodeficiency virus type 1 and mediates a virostatic latent state in primary blood-derived human macrophages in vitro. J Gen Virol 75: 3393-3400, 1994.
    • (1994) J Gen Virol , vol.75 , pp. 3393-3400
    • Montaner, L.J.1    Griffin, P.2    Gordon, S.3
  • 37
    • 56749174940 scopus 로고    scopus 로고
    • Exploring the full spectrum of macrophage activation
    • Mosser DM, Edwards JP. Exploring the full spectrum of macrophage activation. Nat Rev Immunol 8: 958-969, 2008.
    • (2008) Nat Rev Immunol , vol.8 , pp. 958-969
    • Mosser, D.M.1    Edwards, J.P.2
  • 39
    • 79952186298 scopus 로고    scopus 로고
    • MicroRNAs: The fine-tuners of Toll-like receptor signalling
    • O'Neill LA, Sheedy FJ, McCoy CE. MicroRNAs: the fine-tuners of Toll-like receptor signalling. Nat Rev Immunol 11: 163-175, 2011.
    • (2011) Nat Rev Immunol , vol.11 , pp. 163-175
    • O'Neill, L.A.1    Sheedy, F.J.2    McCoy, C.E.3
  • 47
    • 84857883847 scopus 로고    scopus 로고
    • Macrophage plasticity and polarization: In vivo veritas
    • Sica A, Mantovani A. Macrophage plasticity and polarization: in vivo veritas. J Clin Invest 122: 787-795, 2012.
    • (2012) J Clin Invest , vol.122 , pp. 787-795
    • Sica, A.1    Mantovani, A.2
  • 48
    • 84880772300 scopus 로고    scopus 로고
    • MicroRNAmediated control of macrophages and its implications for cancer
    • Squadrito ML, Etzrodt M, De Palma M, Pittet MJ. MicroRNAmediated control of macrophages and its implications for cancer. Trends Immunol 34: 350-359, 2013.
    • (2013) Trends Immunol , vol.34 , pp. 350-359
    • Squadrito, M.L.1    Etzrodt, M.2    De Palma, M.3    Pittet, M.J.4
  • 50
    • 20444446357 scopus 로고    scopus 로고
    • SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells
    • Sullivan CS, Grundhoff AT, Tevethia S, Pipas JM, Ganem D. SV40-encoded microRNAs regulate viral gene expression and reduce susceptibility to cytotoxic T cells. Nature 435: 682-686, 2005.
    • (2005) Nature , vol.435 , pp. 682-686
    • Sullivan, C.S.1    Grundhoff, A.T.2    Tevethia, S.3    Pipas, J.M.4    Ganem, D.5
  • 51
    • 33747608638 scopus 로고    scopus 로고
    • NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses
    • Taganov KD, Boldin MP, Chang KJ, Baltimore D. NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc Natl Acad Sci USA 103: 12481-12486, 2006.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 12481-12486
    • Taganov, K.D.1    Boldin, M.P.2    Chang, K.J.3    Baltimore, D.4
  • 52
    • 68849129712 scopus 로고    scopus 로고
    • Membrane vesicles as conveyors of immune responses
    • Thery C, Ostrowski M, Segura E. Membrane vesicles as conveyors of immune responses. Nat Rev Immunol 9: 581-593, 2009.
    • (2009) Nat Rev Immunol , vol.9 , pp. 581-593
    • Thery, C.1    Ostrowski, M.2    Segura, E.3
  • 53
    • 38049030287 scopus 로고    scopus 로고
    • Modulation of miR-155 and miR-125b levels following lipopolysaccharide/TNF-alpha stimulation and their possible roles in regulating the response to endotoxin shock
    • Tili E, Michaille JJ, Cimino A, Costinean S, Dumitru CD, Adair B, Fabbri M, Alder H, Liu CG, Calin GA, Croce CM. Modulation of miR-155 and miR-125b levels following lipopolysaccharide/TNF-alpha stimulation and their possible roles in regulating the response to endotoxin shock. J Immunol 179: 5082-5089, 2007.
    • (2007) J Immunol , vol.179 , pp. 5082-5089
    • Tili, E.1    Michaille, J.J.2    Cimino, A.3    Costinean, S.4    Dumitru, C.D.5    Adair, B.6    Fabbri, M.7    Alder, H.8    Liu, C.G.9    Calin, G.A.10    Croce, C.M.11
  • 54
    • 79960691435 scopus 로고    scopus 로고
    • MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4
    • Tserel L, Runnel T, Kisand K, Pihlap M, Bakhoff L, Kolde R, Peterson H, Vilo J, Peterson P, Rebane A. MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4. J Biol Chem 286: 26487-26495, 2011.
    • (2011) J Biol Chem , vol.286 , pp. 26487-26495
    • Tserel, L.1    Runnel, T.2    Kisand, K.3    Pihlap, M.4    Bakhoff, L.5    Kolde, R.6    Peterson, H.7    Vilo, J.8    Peterson, P.9    Rebane, A.10
  • 56
    • 84875544506 scopus 로고    scopus 로고
    • Interleukin-4-and interleukin-13-mediated alternatively activated macrophages: Roles in homeostasis and disease
    • Van Dyken SJ, Locksley RM. Interleukin-4-and interleukin-13-mediated alternatively activated macrophages: roles in homeostasis and disease. Annu Rev Immunol 31: 317-343, 2013.
    • (2013) Annu Rev Immunol , vol.31 , pp. 317-343
    • Van Dyken, S.J.1    Locksley, R.M.2
  • 57
    • 60249083292 scopus 로고    scopus 로고
    • Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection
    • Wang X, Ye L, Hou W, Zhou Y, Wang YJ, Metzger DS, Ho WZ. Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection. Blood 113: 671-674, 2009.
    • (2009) Blood , vol.113 , pp. 671-674
    • Wang, X.1    Ye, L.2    Hou, W.3    Zhou, Y.4    Wang, Y.J.5    Metzger, D.S.6    Ho, W.Z.7
  • 58
    • 58149085504 scopus 로고    scopus 로고
    • MicroRNA control in the immune system: Basic principles
    • Xiao C, Rajewsky K. MicroRNA control in the immune system: basic principles. Cell 136: 26-36, 2009.
    • (2009) Cell , vol.136 , pp. 26-36
    • Xiao, C.1    Rajewsky, K.2


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