-
1
-
-
84856141914
-
Myoblast fusion: Lessons from flies and mice
-
Abmayr, S. M. and Pavlath, G. K. (2012). Myoblast fusion: lessons from flies and mice. Development 139, 641-656.
-
(2012)
Development
, vol.139
, pp. 641-656
-
-
Abmayr, S.M.1
Pavlath, G.K.2
-
2
-
-
84455208885
-
Rapid adaptation to food availability by a dopamine-mediated morphogenetic response
-
Adams, D. K., Sewell, M. A., Angerer, R. C. and Angerer, L. M. (2011). Rapid adaptation to food availability by a dopamine-mediated morphogenetic response. Nat. Commun. 2, 592.
-
(2011)
Nat. Commun.
, vol.2
, pp. 592
-
-
Adams, D.K.1
Sewell, M.A.2
Angerer, R.C.3
Angerer, L.M.4
-
3
-
-
79953741938
-
P58-A and P58-B: Novel proteins that mediate skeletogenesis in the sea urchin embryo
-
Adomako-Ankomah, A. and Ettensohn, C. A. (2011). P58-A and P58-B: novel proteins that mediate skeletogenesis in the sea urchin embryo. Dev. Biol. 353, 81-93.
-
(2011)
Dev. Biol.
, vol.353
, pp. 81-93
-
-
Adomako-Ankomah, A.1
Ettensohn, C.A.2
-
4
-
-
84884967529
-
Growth factor-mediated mesodermal cell guidance and skeletogenesis in the sea urchin embryo
-
Adomako-Ankomah, A. and Ettensohn, C. A. (2013). Growth factor-mediated mesodermal cell guidance and skeletogenesis in the sea urchin embryo. Development 140, 4214-4225.
-
(2013)
Development
, vol.140
, pp. 4214-4225
-
-
Adomako-Ankomah, A.1
Ettensohn, C.A.2
-
5
-
-
70350005166
-
Echinoderm phosphorylated matrix proteins UTMP16 and UTMP19 have different functions in sea urchin tooth mineralization
-
Alvares, K., Dixit, S. N., Lux, E. and Veis, A. (2009). Echinoderm phosphorylated matrix proteins UTMP16 and UTMP19 have different functions in sea urchin tooth mineralization. J. Biol. Chem. 284, 26149-26160.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 26149-26160
-
-
Alvares, K.1
Dixit, S.N.2
Lux, E.3
Veis, A.4
-
6
-
-
33646189382
-
cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo
-
Amore, G. and Davidson, E. H. (2006). cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo. Dev. Biol. 293, 555-564.
-
(2006)
Dev. Biol.
, vol.293
, pp. 555-564
-
-
Amore, G.1
Davidson, E.H.2
-
7
-
-
33750975624
-
Paleogenomics of echinoderms
-
Bottjer, D. J., Davidson, E. H., Peterson, K. J. and Cameron, R. A. (2006). Paleogenomics of echinoderms. Science 314, 956-960.
-
(2006)
Science
, vol.314
, pp. 956-960
-
-
Bottjer, D.J.1
Davidson, E.H.2
Peterson, K.J.3
Cameron, R.A.4
-
8
-
-
58149199570
-
SpBase: The sea urchin genome database and web site
-
Cameron, R. A., Samanta, M., Yuan, A., He, D. and Davidson, E. (2009). SpBase: the sea urchin genome database and web site. Nucleic Acids Res. 37, D750-D754.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cameron, R.A.1
Samanta, M.2
Yuan, A.3
He, D.4
Davidson, E.5
-
9
-
-
16644362054
-
Rapid microinjection of fertilized eggs
-
Cheers, M. S. and Ettensohn, C. A. (2004). Rapid microinjection of fertilized eggs. Methods Cell Biol. 74, 287-310.
-
(2004)
Methods Cell Biol.
, vol.74
, pp. 287-310
-
-
Cheers, M.S.1
Ettensohn, C.A.2
-
10
-
-
22144450268
-
P16 is an essential regulator of skeletogenesis in the sea urchin embryo
-
Cheers, M. S. and Ettensohn, C. A. (2005). P16 is an essential regulator of skeletogenesis in the sea urchin embryo. Dev. Biol. 283, 384-396.
-
(2005)
Dev. Biol.
, vol.283
, pp. 384-396
-
-
Cheers, M.S.1
Ettensohn, C.A.2
-
11
-
-
73649148396
-
Dynamics of Delta/Notch signaling on endomesoderm segregation in the sea urchin embryo
-
Croce, J. C. and McClay, D. R. (2010). Dynamics of Delta/Notch signaling on endomesoderm segregation in the sea urchin embryo. Development 137, 83-91.
-
(2010)
Development
, vol.137
, pp. 83-91
-
-
Croce, J.C.1
McClay, D.R.2
-
12
-
-
80052142325
-
Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus
-
Damle, S. and Davidson, E. H. (2011). Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus. Dev. Biol. 357, 505-517.
-
(2011)
Dev. Biol.
, vol.357
, pp. 505-517
-
-
Damle, S.1
Davidson, E.H.2
-
13
-
-
78650362376
-
Emerging properties of animal gene regulatory networks
-
Davidson, E. H. (2010). Emerging properties of animal gene regulatory networks. Nature 468, 911-920.
-
(2010)
Nature
, vol.468
, pp. 911-920
-
-
Davidson, E.H.1
-
14
-
-
0036850090
-
Origin and early evolution of vertebrate skeletonization
-
Donoghue, P. C. and Sansom, I. J. (2002). Origin and early evolution of vertebrate skeletonization. Microsc. Res. Tech. 59, 352-372.
-
(2002)
Microsc. Res. Tech.
, vol.59
, pp. 352-372
-
-
Donoghue, P.C.1
Sansom, I.J.2
-
15
-
-
34347326245
-
Localized VEGF signaling from ectoderm to mesenchyme cells controls morphogenesis of the sea urchin embryo skeleton
-
Duloquin, L., Lhomond, G. and Gache, C. (2007). Localized VEGF signaling from ectoderm to mesenchyme cells controls morphogenesis of the sea urchin embryo skeleton. Development 134, 2293-2302.
-
(2007)
Development
, vol.134
, pp. 2293-2302
-
-
Duloquin, L.1
Lhomond, G.2
Gache, C.3
-
16
-
-
0031595573
-
GSK3beta/shaggy mediates patterning along the animal-vegetal axis of the sea urchin embryo
-
Emily-Fenouil, F., Ghiglione, C., Lhomond, G., Lepage, T. and Gache, C. (1998). GSK3beta/shaggy mediates patterning along the animal-vegetal axis of the sea urchin embryo. Development 125, 2489-2498.
-
(1998)
Development
, vol.125
, pp. 2489-2498
-
-
Emily-Fenouil, F.1
Ghiglione, C.2
Lhomond, G.3
Lepage, T.4
Gache, C.5
-
17
-
-
34249281787
-
The emergence of pattern in embryogenesis: Regulation of beta-catenin localization during early sea urchin development
-
Ettensohn, C. A. (2006). The emergence of pattern in embryogenesis: regulation of beta-catenin localization during early sea urchin development. Sci. STKE 2006, pe48.
-
(2006)
Sci. STKE
, vol.2006
-
-
Ettensohn, C.A.1
-
18
-
-
84879604474
-
Encoding anatomy: Developmental gene regulatory networks and morphogenesis
-
Ettensohn, C. A. (2013). Encoding anatomy: developmental gene regulatory networks and morphogenesis. Genesis 51, 383-409.
-
(2013)
Genesis
, vol.51
, pp. 383-409
-
-
Ettensohn, C.A.1
-
19
-
-
0023901554
-
Cell lineage conversion in the sea urchin embryo
-
Ettensohn, C. A. and McClay, D. R. (1988). Cell lineage conversion in the sea urchin embryo. Dev. Biol. 125, 396-409.
-
(1988)
Dev. Biol.
, vol.125
, pp. 396-409
-
-
Ettensohn, C.A.1
McClay, D.R.2
-
20
-
-
0037821924
-
Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo
-
Ettensohn, C. A., Illies, M. R., Oliveri, P. and De Jong, D. L. (2003). Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo. Development 130, 2917-2928.
-
(2003)
Development
, vol.130
, pp. 2917-2928
-
-
Ettensohn, C.A.1
Illies, M.R.2
Oliveri, P.3
De Jong, D.L.4
-
21
-
-
34848916672
-
Gene regulatory networks and developmental plasticity in the early sea urchin embryo: Alternative deployment of the skeletogenic gene regulatory network
-
Ettensohn, C. A., Kitazawa, C., Cheers, M. S., Leonard, J. D. and Sharma, T. (2007). Gene regulatory networks and developmental plasticity in the early sea urchin embryo: alternative deployment of the skeletogenic gene regulatory network. Development 134, 3077-3087.
-
(2007)
Development
, vol.134
, pp. 3077-3087
-
-
Ettensohn, C.A.1
Kitazawa, C.2
Cheers, M.S.3
Leonard, J.D.4
Sharma, T.5
-
22
-
-
1942422174
-
Role of the ERK-mediated signaling pathway in mesenchyme formation and differentiation in the sea urchin embryo
-
Fernandez-Serra, M., Consales, C., Livigni, A. and Arnone, M. I. (2004). Role of the ERK-mediated signaling pathway in mesenchyme formation and differentiation in the sea urchin embryo. Dev. Biol. 268, 384-402.
-
(2004)
Dev. Biol.
, vol.268
, pp. 384-402
-
-
Fernandez-Serra, M.1
Consales, C.2
Livigni, A.3
Arnone, M.I.4
-
23
-
-
80052159183
-
High-resolution, three-dimensional mapping of gene expression using GeneExpressMap (GEM)
-
Flynn, C. J., Sharma, T., Ruffins, S. W., Guerra, S. L., Crowley, J. C. and Ettensohn, C. A. (2011). High-resolution, three-dimensional mapping of gene expression using GeneExpressMap (GEM). Dev. Biol. 357, 532-540.
-
(2011)
Dev. Biol.
, vol.357
, pp. 532-540
-
-
Flynn, C.J.1
Sharma, T.2
Ruffins, S.W.3
Guerra, S.L.4
Crowley, J.C.5
Ettensohn, C.A.6
-
24
-
-
18744364157
-
Tbrain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo
-
Fuchikami, T., Mitsunaga-Nakatsubo, K., Amemiya, S., Hosomi, T., Watanabe, T., Kurokawa, D., Kataoka, M., Harada, Y., Satoh, N., Kusunoki, S. et al. (2002). Tbrain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo. Development 129, 5205-5216.
-
(2002)
Development
, vol.129
, pp. 5205-5216
-
-
Fuchikami, T.1
Mitsunaga-Nakatsubo, K.2
Amemiya, S.3
Hosomi, T.4
Watanabe, T.5
Kurokawa, D.6
Kataoka, M.7
Harada, Y.8
Satoh, N.9
Kusunoki, S.10
-
25
-
-
0023600070
-
Inhibitory effects of omeprazole, a specific inhibitor of H+, K+-ATPase, on spicule formation in sea urchin embryos and in cultured micromere-derived cells
-
Fujino, Y., Mitsunaga, K. and Yasumasu, I. (1987). Inhibitory effects of omeprazole, a specific inhibitor of H+, K+-ATPase, on spicule formation in sea urchin embryos and in cultured micromere-derived cells. Dev. Growth Differ. 29, 591-597.
-
(1987)
Dev. Growth Differ.
, vol.29
, pp. 591-597
-
-
Fujino, Y.1
Mitsunaga, K.2
Yasumasu, I.3
-
26
-
-
84860002177
-
Phase transitions in biogenic amorphous calcium carbonate
-
Gong, Y. U., Killian, C. E., Olson, I. C., Appathurai, N. P., Amasino, A. L., Martin, M. C., Holt, L. J., Wilt, F. H. and Gilbert, P. U. (2012). Phase transitions in biogenic amorphous calcium carbonate. Proc. Natl. Acad. Sci. USA 109, 6088-6093.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 6088-6093
-
-
Gong, Y.U.1
Killian, C.E.2
Olson, I.C.3
Appathurai, N.P.4
Amasino, A.L.5
Martin, M.C.6
Holt, L.J.7
Wilt, F.H.8
Gilbert, P.U.9
-
27
-
-
0030977135
-
Skeletal morphogenesis in the sea urchin embryo: Regulation of primary mesenchyme gene expression and skeletal rod growth by ectoderm-derived cues
-
Guss, K. A. and Ettensohn, C. A. (1997). Skeletal morphogenesis in the sea urchin embryo: regulation of primary mesenchyme gene expression and skeletal rod growth by ectoderm-derived cues. Development 124, 1899-1908.
-
(1997)
Development
, vol.124
, pp. 1899-1908
-
-
Guss, K.A.1
Ettensohn, C.A.2
-
28
-
-
0014120447
-
Cellular movement and contact in sea urchin morphogenesis
-
Gustafson, T. and Wolpert, L. (1967). Cellular movement and contact in sea urchin morphogenesis. Biol. Rev. Camb. Philos. Soc. 42, 442-498.
-
(1967)
Biol. Rev. Camb. Philos. Soc.
, vol.42
, pp. 442-498
-
-
Gustafson, T.1
Wolpert, L.2
-
29
-
-
0000959310
-
Isolation, culture, and differentiation of echinoid primary mesenchyme cells
-
Harkey, M. A. and Whiteley, A. H. (1980). Isolation, culture, and differentiation of echinoid primary mesenchyme cells. Rouxs Arch. Dev. Biol. 189, 111-122.
-
(1980)
Rouxs Arch. Dev. Biol.
, vol.189
, pp. 111-122
-
-
Harkey, M.A.1
Whiteley, A.H.2
-
30
-
-
0028054383
-
Functional consequences of phenotypic plasticity in echinoid larvae
-
Hart, M. W. and Strathmann, R. R. (1994). Functional consequences of phenotypic plasticity in echinoid larvae. Biol. Bull. 186, 291-299.
-
(1994)
Biol. Bull.
, vol.186
, pp. 291-299
-
-
Hart, M.W.1
Strathmann, R.R.2
-
31
-
-
0032126725
-
The dynamics and regulation of mesenchymal cell fusion in the sea urchin embryo
-
Hodor, P. G. and Ettensohn, C. A. (1998). The dynamics and regulation of mesenchymal cell fusion in the sea urchin embryo. Dev. Biol. 199, 111-124.
-
(1998)
Dev. Biol.
, vol.199
, pp. 111-124
-
-
Hodor, P.G.1
Ettensohn, C.A.2
-
32
-
-
84934434530
-
Mesenchymal cell fusion in the sea urchin embryo
-
Hodor, P. G. and Ettensohn, C. A. (2008). Mesenchymal cell fusion in the sea urchin embryo. Methods Mol. Biol. 475, 315-334.
-
(2008)
Methods Mol. Biol.
, vol.475
, pp. 315-334
-
-
Hodor, P.G.1
Ettensohn, C.A.2
-
33
-
-
0034213578
-
Cell-substrate interactions during sea urchin gastrulation: Migrating primary mesenchyme cells interact with and align extracellular matrix fibers that contain ECM3, a molecule with NG2-like and multiple calcium-binding domains
-
Hodor, P. G., Illies, M. R., Broadley, S. and Ettensohn, C. A. (2000). Cell-substrate interactions during sea urchin gastrulation: migrating primary mesenchyme cells interact with and align extracellular matrix fibers that contain ECM3, a molecule with NG2-like and multiple calcium-binding domains. Dev. Biol. 222, 181-194.
-
(2000)
Dev. Biol.
, vol.222
, pp. 181-194
-
-
Hodor, P.G.1
Illies, M.R.2
Broadley, S.3
Ettensohn, C.A.4
-
34
-
-
9944244222
-
Otopetrin 1 is required for otolith formation in the zebrafish Danio rerio
-
Hughes, I., Blasiole, B., Huss, D., Warchol, M. E., Rath, N. P., Hurle, B., Ignatova, E., Dickman, J. D., Thalmann, R., Levenson, R. et al. (2004). Otopetrin 1 is required for otolith formation in the zebrafish Danio rerio. Dev. Biol. 276, 391-402.
-
(2004)
Dev. Biol.
, vol.276
, pp. 391-402
-
-
Hughes, I.1
Blasiole, B.2
Huss, D.3
Warchol, M.E.4
Rath, N.P.5
Hurle, B.6
Ignatova, E.7
Dickman, J.D.8
Thalmann, R.9
Levenson, R.10
-
35
-
-
0037386836
-
Non-syndromic vestibular disorder with otoconial agenesis in tilted/mergulhador mice caused by mutations in otopetrin 1
-
Hurle, B., Ignatova, E., Massironi, S. M., Mashimo, T., Rios, X., Thalmann, I., Thalmann, R. and Ornitz, D. M. (2003). Non-syndromic vestibular disorder with otoconial agenesis in tilted/mergulhador mice caused by mutations in otopetrin 1. Hum. Mol. Genet. 12, 777-789.
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 777-789
-
-
Hurle, B.1
Ignatova, E.2
Massironi, S.M.3
Mashimo, T.4
Rios, X.5
Thalmann, I.6
Thalmann, R.7
Ornitz, D.M.8
-
36
-
-
0027300824
-
Studies on the cellular pathway involved in assembly of the embryonic sea urchin spicule
-
Hwang, S. P. and Lennarz, W. J. (1993). Studies on the cellular pathway involved in assembly of the embryonic sea urchin spicule. Exp. Cell Res. 205, 383-387.
-
(1993)
Exp. Cell Res.
, vol.205
, pp. 383-387
-
-
Hwang, S.P.1
Lennarz, W.J.2
-
37
-
-
12244259068
-
Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus
-
Illies, M. R., Peeler, M. T., Dechtiaruk, A. M. and Ettensohn, C. A. (2002). Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus. Dev. Genes Evol. 212, 419-431.
-
(2002)
Dev. Genes Evol.
, vol.212
, pp. 419-431
-
-
Illies, M.R.1
Peeler, M.T.2
Dechtiaruk, A.M.3
Ettensohn, C.A.4
-
38
-
-
0032053841
-
Matrix metalloproteinase inhibitors disrupt spicule formation by primary mesenchyme cells in the sea urchin embryo
-
Ingersoll, E. P. and Wilt, F. H. (1998). Matrix metalloproteinase inhibitors disrupt spicule formation by primary mesenchyme cells in the sea urchin embryo. Dev. Biol.196, 95-106.
-
(1998)
Dev. Biol.
, vol.196
, pp. 95-106
-
-
Ingersoll, E.P.1
Wilt, F.H.2
-
39
-
-
84865021971
-
The Raine syndrome protein FAM20C is a Golgi kinase that phosphorylates bio-mineralization proteins
-
Ishikawa, H. O., Xu, A., Ogura, E., Manning, G. and Irvine, K. D. (2012). The Raine syndrome protein FAM20C is a Golgi kinase that phosphorylates bio-mineralization proteins. PLoS ONE 7, e42988.
-
(2012)
PLoS ONE
, vol.7
-
-
Ishikawa, H.O.1
Xu, A.2
Ogura, E.3
Manning, G.4
Irvine, K.D.5
-
40
-
-
34347402103
-
Sponge paleogenomics reveals an ancient role for carbonic anhydrase in skeletogenesis
-
Jackson, D. J., Macis, L., Reitner, J., Degnan, B. M. and Wörheide, G. (2007). Sponge paleogenomics reveals an ancient role for carbonic anhydrase in skeletogenesis. Science 316, 1893-1895.
-
(2007)
Science
, vol.316
, pp. 1893-1895
-
-
Jackson, D.J.1
Macis, L.2
Reitner, J.3
Degnan, B.M.4
Wörheide, G.5
-
41
-
-
78650915618
-
Regulation of cellular calcium in vestibular supporting cells by otopetrin 1
-
Kim, E., Hyrc, K. L., Speck, J., Lundberg, Y. W., Salles, F. T., Kachar, B., Goldberg, M. P., Warchol, M. E. and Ornitz, D. M. (2010). Regulation of cellular calcium in vestibular supporting cells by otopetrin 1. J. Neurophysiol. 104, 3439-3450.
-
(2010)
J. Neurophysiol.
, vol.104
, pp. 3439-3450
-
-
Kim, E.1
Hyrc, K.L.2
Speck, J.3
Lundberg, Y.W.4
Salles, F.T.5
Kachar, B.6
Goldberg, M.P.7
Warchol, M.E.8
Ornitz, D.M.9
-
42
-
-
79951852316
-
Missense mutations in Otopetrin 1 affect subcellular localization and inhibition of purinergic signaling in vestibular supporting cells
-
Kim, E., Hyrc, K. L., Speck, J., Salles, F. T., Lundberg, Y. W., Goldberg, M. P., Kachar, B., Warchol, M. E. and Ornitz, D. M. (2011). Missense mutations in Otopetrin 1 affect subcellular localization and inhibition of purinergic signaling in vestibular supporting cells. Mol. Cell. Neurosci. 46, 655-661.
-
(2011)
Mol. Cell. Neurosci.
, vol.46
, pp. 655-661
-
-
Kim, E.1
Hyrc, K.L.2
Speck, J.3
Salles, F.T.4
Lundberg, Y.W.5
Goldberg, M.P.6
Kachar, B.7
Warchol, M.E.8
Ornitz, D.M.9
-
43
-
-
84862633622
-
Basement membrane assembly of the integrin α8β1 ligand nephronectin requires Fraser syndrome-associated proteins
-
Kiyozumi, D., Takeichi, M., Nakano, I., Sato, Y., Fukuda, T. and Sekiguchi, K. (2012). Basement membrane assembly of the integrin α8β1 ligand nephronectin requires Fraser syndrome-associated proteins. J. Cell Biol. 197, 677-689.
-
(2012)
J. Cell Biol.
, vol.197
, pp. 677-689
-
-
Kiyozumi, D.1
Takeichi, M.2
Nakano, I.3
Sato, Y.4
Fukuda, T.5
Sekiguchi, K.6
-
44
-
-
33645983486
-
Biomineralization and evolutionary history
-
Knoll, A. H. (2003). Biomineralization and evolutionary history. Reviews in Mineralogy and Geochemistry 54, 329-356.
-
(2003)
Reviews in Mineralogy and Geochemistry
, vol.54
, pp. 329-356
-
-
Knoll, A.H.1
-
45
-
-
44949091273
-
Matrix metalloproteinases and bone
-
Krane, S. M. and Inada, M. (2008). Matrix metalloproteinases and bone. Bone 43, 7-18.
-
(2008)
Bone
, vol.43
, pp. 7-18
-
-
Krane, S.M.1
Inada, M.2
-
46
-
-
0032926482
-
HpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo
-
Kurokawa, D., Kitajima, T., Mitsunaga-Nakatsubo, K., Amemiya, S., Shimada, H. and Akasaka, K. (1999). HpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo. Mech. Dev. 80, 41-52.
-
(1999)
Mech. Dev.
, vol.80
, pp. 41-52
-
-
Kurokawa, D.1
Kitajima, T.2
Mitsunaga-Nakatsubo, K.3
Amemiya, S.4
Shimada, H.5
Akasaka, K.6
-
47
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. and Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
48
-
-
0026536983
-
Spatial and temporal expression pattern during sea urchin embryogenesis of a gene coding for a protease homologous to the human protein BMP-1 and to the product of the Drosophila dorsal-ventral patterning gene tolloid
-
Lepage, T., Ghiglione, C. and Gache, C. (1992). Spatial and temporal expression pattern during sea urchin embryogenesis of a gene coding for a protease homologous to the human protein BMP-1 and to the product of the Drosophila dorsal-ventral patterning gene tolloid. Development 114, 147-163.
-
(1992)
Development
, vol.114
, pp. 147-163
-
-
Lepage, T.1
Ghiglione, C.2
Gache, C.3
-
49
-
-
34249794029
-
A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus
-
Livingston, B. T., Killian, C. E., Wilt, F., Cameron, A., Landrum, M. J., Ermolaeva, O., Sapojnikov, V., Maglott, D. R., Buchanan, A. M. and Ettensohn, C. A. (2006). A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus. Dev. Biol. 300, 335-348.
-
(2006)
Dev. Biol.
, vol.300
, pp. 335-348
-
-
Livingston, B.T.1
Killian, C.E.2
Wilt, F.3
Cameron, A.4
Landrum, M.J.5
Ermolaeva, O.6
Sapojnikov, V.7
Maglott, D.R.8
Buchanan, A.M.9
Ettensohn, C.A.10
-
50
-
-
0032914194
-
Nuclear betacatenin is required to specify vegetal cell fates in the sea urchin embryo
-
Logan, C. Y., Miller, J. R., Ferkowicz, M. J. and McClay, D. R. (1999). Nuclear betacatenin is required to specify vegetal cell fates in the sea urchin embryo. Development 126, 345-357.
-
(1999)
Development
, vol.126
, pp. 345-357
-
-
Logan, C.Y.1
Miller, J.R.2
Ferkowicz, M.J.3
McClay, D.R.4
-
51
-
-
0029557107
-
Four-dimensional microscopic analysis of the filopodial behavior of primary mesenchyme cells during gastrulation in the sea urchin embryo
-
Malinda, K. M., Fisher, G. W. and Ettensohn, C. A. (1995). Four-dimensional microscopic analysis of the filopodial behavior of primary mesenchyme cells during gastrulation in the sea urchin embryo. Dev. Biol. 172, 552-566.
-
(1995)
Dev. Biol.
, vol.172
, pp. 552-566
-
-
Malinda, K.M.1
Fisher, G.W.2
Ettensohn, C.A.3
-
52
-
-
77953573499
-
Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix
-
Mann, K., Wilt, F. H. and Poustka, A. J. (2010). Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix. Proteome Sci. 8, 33.
-
(2010)
Proteome Sci.
, vol.8
, pp. 33
-
-
Mann, K.1
Wilt, F.H.2
Poustka, A.J.3
-
53
-
-
77956628617
-
High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development
-
Materna, S. C., Nam, J. and Davidson, E. H. (2010). High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development. Gene Expr. Patterns 10, 177-184.
-
(2010)
Gene Expr. Patterns
, vol.10
, pp. 177-184
-
-
Materna, S.C.1
Nam, J.2
Davidson, E.H.3
-
54
-
-
0029073651
-
Dynamics of thin filopodia during sea urchin gastrulation
-
Miller, J., Fraser, S. E. and McClay, D. (1995). Dynamics of thin filopodia during sea urchin gastrulation. Development 121, 2501-2511.
-
(1995)
Development
, vol.121
, pp. 2501-2511
-
-
Miller, J.1
Fraser, S.E.2
McClay, D.3
-
55
-
-
2942587375
-
Expression patterns of four different regulatory genes that function during sea urchin development
-
Minokawa, T., Rast, J. P., Arenas-Mena, C., Franco, C. B. and Davidson, E. H. (2004). Expression patterns of four different regulatory genes that function during sea urchin development. Gene Expr. Patterns 4, 449-456.
-
(2004)
Gene Expr. Patterns
, vol.4
, pp. 449-456
-
-
Minokawa, T.1
Rast, J.P.2
Arenas-Mena, C.3
Franco, C.B.4
Davidson, E.H.5
-
56
-
-
0022839103
-
Change in the activity of Cl-, HCO3(-)-ATPase in microsome fraction during early development of the sea urchin, Hemicentrotus pulcherrimus
-
Mitsunaga, K., Fujino, Y. and Yasumasu, I. (1986). Change in the activity of Cl-, HCO3(-)-ATPase in microsome fraction during early development of the sea urchin, Hemicentrotus pulcherrimus. J. Biochem. 100, 1607-1615.
-
(1986)
J. Biochem.
, vol.100
, pp. 1607-1615
-
-
Mitsunaga, K.1
Fujino, Y.2
Yasumasu, I.3
-
57
-
-
80051789305
-
Evolutionary origins of animal skeletal biomineralization
-
Murdock, D. J. E. and Donoghue, P. C. (2011). Evolutionary origins of animal skeletal biomineralization. Cells Tissues Organs 194, 98-102.
-
(2011)
Cells Tissues Organs
, vol.194
, pp. 98-102
-
-
Murdock, D.J.E.1
Donoghue, P.C.2
-
58
-
-
43149086112
-
Global regulatory logic for specification of an embryonic cell lineage
-
Oliveri, P., Tu, Q. and Davidson, E. H. (2008). Global regulatory logic for specification of an embryonic cell lineage. Proc. Natl. Acad. Sci. USA 105, 5955-5962.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 5955-5962
-
-
Oliveri, P.1
Tu, Q.2
Davidson, E.H.3
-
59
-
-
0025598470
-
Consequences of the calcite skeletons of planktonic echinoderm larvae for orientation, swimming, and shape
-
Pennington, J. T. and Strathmann, R. R. (1990). Consequences of the calcite skeletons of planktonic echinoderm larvae for orientation, swimming, and shape. Biol. Bull. 179, 121-133.
-
(1990)
Biol. Bull.
, vol.179
, pp. 121-133
-
-
Pennington, J.T.1
Strathmann, R.R.2
-
60
-
-
79952681078
-
Evolution of gene regulatory networks controlling body plan development
-
Peter, I. S. and Davidson, E. H. (2011). Evolution of gene regulatory networks controlling body plan development. Cell 144, 970-985.
-
(2011)
Cell
, vol.144
, pp. 970-985
-
-
Peter, I.S.1
Davidson, E.H.2
-
61
-
-
0037330641
-
Primary mesenchyme cell patterning during the early stages following ingression
-
Peterson, R. E. and McClay, D. R. (2003). Primary mesenchyme cell patterning during the early stages following ingression. Dev. Biol. 254, 68-78.
-
(2003)
Dev. Biol.
, vol.254
, pp. 68-78
-
-
Peterson, R.E.1
McClay, D.R.2
-
62
-
-
34548858215
-
A global view of gene expression in lithium and zinc treated sea urchin embryos: New components of gene regulatory networks
-
Poustka, A. J., Kühn, A., Groth, D., Weise, V., Yaguchi, S., Burke, R. D., Herwig, R., Lehrach, H. and Panopoulou, G. (2007). A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks. Genome Biol. 8, R85.
-
(2007)
Genome Biol.
, vol.8
-
-
Poustka, A.J.1
Kühn, A.2
Groth, D.3
Weise, V.4
Yaguchi, S.5
Burke, R.D.6
Herwig, R.7
Lehrach, H.8
Panopoulou, G.9
-
63
-
-
84855462918
-
The genomic regulatory control of skeletal morphogenesis in the sea urchin
-
Rafiq, K., Cheers, M. S. and Ettensohn, C. A. (2012). The genomic regulatory control of skeletal morphogenesis in the sea urchin. Development 139, 579-590.
-
(2012)
Development
, vol.139
, pp. 579-590
-
-
Rafiq, K.1
Cheers, M.S.2
Ettensohn, C.A.3
-
64
-
-
33748467781
-
Cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification
-
Ransick, A. and Davidson, E. H. (2006). cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification. Dev. Biol. 297, 587-602.
-
(2006)
Dev. Biol.
, vol.297
, pp. 587-602
-
-
Ransick, A.1
Davidson, E.H.2
-
65
-
-
0024655827
-
Inhibitors of metalloendoproteases block spiculogenesis in sea urchin primary mesenchyme cells
-
Roe, J. L., Park, H. R., Strittmatter, W. J. and Lennarz, W. J. (1989). Inhibitors of metalloendoproteases block spiculogenesis in sea urchin primary mesenchyme cells. Exp. Cell Res. 181, 542-550.
-
(1989)
Exp. Cell Res.
, vol.181
, pp. 542-550
-
-
Roe, J.L.1
Park, H.R.2
Strittmatter, W.J.3
Lennarz, W.J.4
-
66
-
-
1642351837
-
A Raf/MEK/ERK signaling pathway is required for development of the sea urchin embryo micromere lineage through phosphorylation of the transcription factor Ets
-
Röttinger, E., Besnardeau, L. and Lepage, T. (2004). A Raf/MEK/ERK signaling pathway is required for development of the sea urchin embryo micromere lineage through phosphorylation of the transcription factor Ets. Development 131, 1075-1087.
-
(2004)
Development
, vol.131
, pp. 1075-1087
-
-
Röttinger, E.1
Besnardeau, L.2
Lepage, T.3
-
67
-
-
77950494318
-
Activation of the skeletogenic gene regulatory network in the early sea urchin embryo
-
Sharma, T. and Ettensohn, C. A. (2010). Activation of the skeletogenic gene regulatory network in the early sea urchin embryo. Development 137, 1149-1157.
-
(2010)
Development
, vol.137
, pp. 1149-1157
-
-
Sharma, T.1
Ettensohn, C.A.2
-
68
-
-
27744516069
-
The genetics of Fraser syndrome and the blebs mouse mutants
-
Smyth, I. and Scambler, P. (2005). The genetics of Fraser syndrome and the blebs mouse mutants. Hum. Mol. Genet. 14 Suppl. 2, R269-R274.
-
(2005)
Hum. Mol. Genet.
, vol.14
, Issue.SUPPL. 2
-
-
Smyth, I.1
Scambler, P.2
-
69
-
-
33750995860
-
The genome of the sea urchin Strongylocentrotus purpuratus
-
Sea Urchin Genome Sequencing Consortium
-
Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D. et al.; Sea Urchin Genome Sequencing Consortium (2006). The genome of the sea urchin Strongylocentrotus purpuratus. Science 314, 941-952.
-
(2006)
Science
, vol.314
, pp. 941-952
-
-
Sodergren, E.1
Weinstock, G.M.2
Davidson, E.H.3
Cameron, R.A.4
Gibbs, R.A.5
Angerer, R.C.6
Angerer, L.M.7
Arnone, M.I.8
Burgess, D.R.9
Burke, R.D.10
-
70
-
-
10944219719
-
Mutated otopetrin 1 affects the genesis of otoliths and the localization of Starmaker in zebrafish
-
Söllner, C., Schwarz, H., Geisler, R. and Nicolson, T. (2004). Mutated otopetrin 1 affects the genesis of otoliths and the localization of Starmaker in zebrafish. Dev. Genes Evol. 214, 582-590.
-
(2004)
Dev. Genes Evol.
, vol.214
, pp. 582-590
-
-
Söllner, C.1
Schwarz, H.2
Geisler, R.3
Nicolson, T.4
-
71
-
-
26444591973
-
Genomic regulatory networks and animal development
-
Stathopoulos, A. and Levine, M. (2005). Genomic regulatory networks and animal development. Dev. Cell 9, 449-462.
-
(2005)
Dev. Cell
, vol.9
, pp. 449-462
-
-
Stathopoulos, A.1
Levine, M.2
-
72
-
-
84868138344
-
Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification
-
Stumpp, M., Hu, M. Y., Melzner, F., Gutowska, M. A., Dorey, N., Himmerkus, N., Holtmann, W. C., Dupont, S. T., Thorndyke, M. C. and Bleich, M. (2012). Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification. Proc. Natl. Acad. Sci. USA 109, 18192-18197.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 18192-18197
-
-
Stumpp, M.1
Hu, M.Y.2
Melzner, F.3
Gutowska, M.A.4
Dorey, N.5
Himmerkus, N.6
Holtmann, W.C.7
Dupont, S.T.8
Thorndyke, M.C.9
Bleich, M.10
-
73
-
-
84861658918
-
Secreted kinase phosphorylates extracellular proteins that regulate biomineralization
-
Tagliabracci, V. S., Engel, J. L., Wen, J., Wiley, S. E., Worby, C. A., Kinch, L. N., Xiao, J., Grishin, N. V. and Dixon, J. E. (2012). Secreted kinase phosphorylates extracellular proteins that regulate biomineralization. Science 336, 1150-1153.
-
(2012)
Science
, vol.336
, pp. 1150-1153
-
-
Tagliabracci, V.S.1
Engel, J.L.2
Wen, J.3
Wiley, S.E.4
Worby, C.A.5
Kinch, L.N.6
Xiao, J.7
Grishin, N.V.8
Dixon, J.E.9
-
74
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., Pimentel, H., Salzberg, S. L., Rinn, J. L. and Pachter, L. (2012). Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc.7, 562-578.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
75
-
-
33751507966
-
Sea urchin Forkhead gene family: Phylogeny and embryonic expression
-
Tu, Q., Brown, C. T., Davidson, E. H. and Oliveri, P. (2006). Sea urchin Forkhead gene family: phylogeny and embryonic expression. Dev. Biol. 300, 49-62.
-
(2006)
Dev. Biol.
, vol.300
, pp. 49-62
-
-
Tu, Q.1
Brown, C.T.2
Davidson, E.H.3
Oliveri, P.4
-
76
-
-
84867146009
-
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis
-
Tu, Q., Cameron, R. A., Worley, K. C., Gibbs, R. A. and Davidson, E. H. (2012). Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Genome Res. 22, 2079-2087.
-
(2012)
Genome Res.
, vol.22
, pp. 2079-2087
-
-
Tu, Q.1
Cameron, R.A.2
Worley, K.C.3
Gibbs, R.A.4
Davidson, E.H.5
-
77
-
-
80054751363
-
Seeing elegance in gene regulatory networks of the worm
-
Van Nostrand, E. L. and Kim, S. K. (2011). Seeing elegance in gene regulatory networks of the worm. Curr. Opin. Genet. Dev. 21, 776-786.
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 776-786
-
-
Van Nostrand, E.L.1
Kim, S.K.2
-
78
-
-
79960317704
-
Aquaporins at a glance
-
Verkman, A. S. (2011). Aquaporins at a glance. J. Cell Sci. 124, 2107-2112.
-
(2011)
J. Cell Sci.
, vol.124
, pp. 2107-2112
-
-
Verkman, A.S.1
-
79
-
-
3142626011
-
Differential stability of beta-catenin along the animalvegetal axis of the sea urchin embryo mediated by dishevelled
-
Weitzel, H. E., Illies, M. R., Byrum, C. A., Xu, R., Wikramanayake, A. H. and Ettensohn, C. A. (2004). Differential stability of beta-catenin along the animalvegetal axis of the sea urchin embryo mediated by dishevelled. Development 131, 2947-2956.
-
(2004)
Development
, vol.131
, pp. 2947-2956
-
-
Weitzel, H.E.1
Illies, M.R.2
Byrum, C.A.3
Xu, R.4
Wikramanayake, A.H.5
Ettensohn, C.A.6
-
80
-
-
0026038631
-
Primary mesenchyme cells of the sea urchin embryo require an autonomously produced, nonfibrillar collagen for spiculogenesis
-
Wessel, G. M., Etkin, M. and Benson, S. (1991). Primary mesenchyme cells of the sea urchin embryo require an autonomously produced, nonfibrillar collagen for spiculogenesis. Dev. Biol. 148, 261-272.
-
(1991)
Dev. Biol.
, vol.148
, pp. 261-272
-
-
Wessel, G.M.1
Etkin, M.2
Benson, S.3
-
81
-
-
0032580154
-
A marriage of bone and nacre
-
Westbroek, P. and Marin, F. (1998). A marriage of bone and nacre. Nature 392, 861-862.
-
(1998)
Nature
, vol.392
, pp. 861-862
-
-
Westbroek, P.1
Marin, F.2
-
82
-
-
0032483023
-
Beta-Catenin is essential for patterning the maternally specified animal-vegetal axis in the sea urchin embryo
-
Wikramanayake, A. H., Huang, L. and Klein, W. H. (1998). beta-Catenin is essential for patterning the maternally specified animal-vegetal axis in the sea urchin embryo. Proc. Natl. Acad. Sci. USA 95, 9343-9348.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9343-9348
-
-
Wikramanayake, A.H.1
Huang, L.2
Klein, W.H.3
-
83
-
-
84889968360
-
The morphogenesis and biomineralization of the sea urchin larval skeleton
-
In (ed. E. Bauerlein), Weinheim: Wiley-VCH Press
-
Wilt, F. H. and Ettensohn, C. A. (2007). The morphogenesis and biomineralization of the sea urchin larval skeleton. In Handbook of Biomineralization: Biological Aspects and Structure Formation (ed. E. Bauerlein), pp. 183-210. Weinheim: Wiley-VCH Press.
-
(2007)
Handbook of Biomineralization: Biological Aspects and Structure Formation
, pp. 183-210
-
-
Wilt, F.H.1
Ettensohn, C.A.2
-
84
-
-
34247330636
-
The Snail repressor is required for PMC ingression in the sea urchin embryo
-
Wu, S. Y. and McClay, D. R. (2007). The Snail repressor is required for PMC ingression in the sea urchin embryo. Development 134, 1061-1070.
-
(2007)
Development
, vol.134
, pp. 1061-1070
-
-
Wu, S.Y.1
McClay, D.R.2
-
85
-
-
81955160746
-
Modeling transcriptional networks in Drosophila development at multiple scales
-
Wunderlich, Z. and DePace, A. H. (2011). Modeling transcriptional networks in Drosophila development at multiple scales. Curr. Opin. Genet. Dev. 21, 711-718.
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 711-718
-
-
Wunderlich, Z.1
DePace, A.H.2
-
86
-
-
79959560813
-
Matrix vesicles: Structure, composition, formation and function in calcification
-
Wuthier, R. E. and Lipscomb, G. F. (2011). Matrix vesicles: structure, composition, formation and function in calcification. Front. Biosci. (Landmark Ed.). 16, 2812-2902.
-
(2011)
Front. Biosci. (Landmark Ed.).
, vol.16
, pp. 2812-2902
-
-
Wuthier, R.E.1
Lipscomb, G.F.2
-
87
-
-
77955571110
-
Implication of HpEts in gene regulatory networks responsible for specification of sea urchin skeletogenic primary mesenchyme cells
-
Yajima, M., Umeda, R., Fuchikami, T., Kataoka, M., Sakamoto, N., Yamamoto, T. and Akasaka, K. (2010). Implication of HpEts in gene regulatory networks responsible for specification of sea urchin skeletogenic primary mesenchyme cells. Zoolog. Sci. 27, 638-646.
-
(2010)
Zoolog. Sci.
, vol.27
, pp. 638-646
-
-
Yajima, M.1
Umeda, R.2
Fuchikami, T.3
Kataoka, M.4
Sakamoto, N.5
Yamamoto, T.6
Akasaka, K.7
-
88
-
-
0022273859
-
Mechanism for electrosilent Ca2+ transport to cause calcification of spicules in sea urchin embryos
-
Yasumasu, I., Mitsunaga, K. and Fujino, Y. (1985). Mechanism for electrosilent Ca2+ transport to cause calcification of spicules in sea urchin embryos. Exp. Cell Res.159, 80-90.
-
(1985)
Exp. Cell Res.
, vol.159
, pp. 80-90
-
-
Yasumasu, I.1
Mitsunaga, K.2
Fujino, Y.3
|