-
2
-
-
33846326304
-
Genetic screening for signal transduction in the era of network biology
-
Friedman A., Perrimon N. Genetic screening for signal transduction in the era of network biology. Cell 2007, 128225-128231.
-
(2007)
Cell
, pp. 128225-128231
-
-
Friedman, A.1
Perrimon, N.2
-
5
-
-
33846491681
-
Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
-
Hooper S.D., Boue S., Krause R., Jensen L.J., Mason C.E., Ghanim M., White K.P., Furlong E.E.M., Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Molecular Systems Biology 2007, 3:72.
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 72
-
-
Hooper, S.D.1
Boue, S.2
Krause, R.3
Jensen, L.J.4
Mason, C.E.5
Ghanim, M.6
White, K.P.7
Furlong, E.E.M.8
Bork, P.9
-
8
-
-
57349128823
-
Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration
-
McMahon A., Supatto W., Fraser S.E., Stathopoulos A. Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration. Science (New York, NY) 2008, 322:1546-1550.
-
(2008)
Science (New York, NY)
, vol.322
, pp. 1546-1550
-
-
McMahon, A.1
Supatto, W.2
Fraser, S.E.3
Stathopoulos, A.4
-
9
-
-
0019133661
-
Mutations affecting segment number and polarity in Drosophila
-
Nüsslein-Volhard C., Wieschaus E. Mutations affecting segment number and polarity in Drosophila. Nature 1980, 287:795-801.
-
(1980)
Nature
, vol.287
, pp. 795-801
-
-
Nüsslein-Volhard, C.1
Wieschaus, E.2
-
10
-
-
0021603716
-
Information for the dorsal-ventral pattern of the Drosophila embryo is stored as maternal mRNA
-
Anderson K.V., Nüsslein-Volhard C. Information for the dorsal-ventral pattern of the Drosophila embryo is stored as maternal mRNA. Nature 1984, 311:223-227.
-
(1984)
Nature
, vol.311
, pp. 223-227
-
-
Anderson, K.V.1
Nüsslein-Volhard, C.2
-
11
-
-
17444402501
-
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
-
Bergman C.M., Carlson J.W., Celniker S.E. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics (Oxford, England) 2005, 21:1747-1749.
-
(2005)
Bioinformatics (Oxford, England)
, vol.21
, pp. 1747-1749
-
-
Bergman, C.M.1
Carlson, J.W.2
Celniker, S.E.3
-
12
-
-
78651335916
-
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
-
Gallo S.M., Gerrard D.T., Miner D., Simich M., Des Soye B., Bergman C.M., Halfon M.S. REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila. Nucleic Acids Res 2011, 39:D118-D123.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gallo, S.M.1
Gerrard, D.T.2
Miner, D.3
Simich, M.4
Des Soye, B.5
Bergman, C.M.6
Halfon, M.S.7
-
13
-
-
68849103482
-
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
-
MacArthur S., Li X.-Y., Brown J.B., Chu H.C., Zeng L., Grondona B.P., Hechmer A., Simirenko L., Keränen S.V.E., Knowles D.W., et al. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biology 2009, 10:R80.
-
(2009)
Genome Biology
, vol.10
-
-
MacArthur, S.1
Li, X.-Y.2
Brown, J.B.3
Chu, H.C.4
Zeng, L.5
Grondona, B.P.6
Hechmer, A.7
Simirenko, L.8
Keränen, S.V.E.9
Knowles, D.W.10
-
14
-
-
78650331647
-
Identification of functional elements and regulatory circuits by Drosophila modENCODE
-
Roy S., Ernst J., Kharchenko P.V., Kheradpour P., Negre N., Eaton M.L., Landolin J.M., Bristow C.A., Ma L., Lin M.F., et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, NY) 2010, 330:1787-1797.
-
(2010)
Science (New York, NY)
, vol.330
, pp. 1787-1797
-
-
Roy, S.1
Ernst, J.2
Kharchenko, P.V.3
Kheradpour, P.4
Negre, N.5
Eaton, M.L.6
Landolin, J.M.7
Bristow, C.A.8
Ma, L.9
Lin, M.F.10
-
15
-
-
79953046943
-
A cis-regulatory map of the Drosophila genome
-
Negre N., Brown C.D., Ma L., Bristow C.A., Miller S.W., Wagner U., Kheradpour P., Eaton M.L., Loriaux P., Sealfon R., et al. A cis-regulatory map of the Drosophila genome. Nature 2011, 471:527-531.
-
(2011)
Nature
, vol.471
, pp. 527-531
-
-
Negre, N.1
Brown, C.D.2
Ma, L.3
Bristow, C.A.4
Miller, S.W.5
Wagner, U.6
Kheradpour, P.7
Eaton, M.L.8
Loriaux, P.9
Sealfon, R.10
-
16
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
Kharchenko P.V., Alekseyenko A.A., Schwartz Y.B., Minoda A., Riddle N.C., Ernst J., Sabo P.J., Larschan E., Gorchakov A.A., Gu T., et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 2010, 471:480-485.
-
(2010)
Nature
, vol.471
, pp. 480-485
-
-
Kharchenko, P.V.1
Alekseyenko, A.A.2
Schwartz, Y.B.3
Minoda, A.4
Riddle, N.C.5
Ernst, J.6
Sabo, P.J.7
Larschan, E.8
Gorchakov, A.A.9
Gu, T.10
-
17
-
-
79952256180
-
Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-Seq
-
Lott S.E., Villalta J.E., Schroth G.P., Luo S., Tonkin L.A., Eisen M.B. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-Seq. PLoS Biology 2011, 9:e1000590.
-
(2011)
PLoS Biology
, vol.9
-
-
Lott, S.E.1
Villalta, J.E.2
Schroth, G.P.3
Luo, S.4
Tonkin, L.A.5
Eisen, M.B.6
-
18
-
-
79959902194
-
The developmental transcriptome of Drosophila melanogaster
-
Graveley B.R., Brooks A.N., Carlson J.W., Duff M.O., Landolin J.M., Yang L., Artieri C.G., van Baren M.J., Boley N., Booth B.W., et al. The developmental transcriptome of Drosophila melanogaster. Nature 2010.
-
(2010)
Nature
-
-
Graveley, B.R.1
Brooks, A.N.2
Carlson, J.W.3
Duff, M.O.4
Landolin, J.M.5
Yang, L.6
Artieri, C.G.7
van Baren, M.J.8
Boley, N.9
Booth, B.W.10
-
20
-
-
41949085885
-
A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm
-
Fowlkes C.C., Luengo Hendriks C.L., Keränen S.V.E., Weber G.H., Rübel O., Huang M.-Y., Chatoor S., DePace A.H., Simirenko L., Henriquez C., et al. A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm. Cell 2008, 133:364-374.
-
(2008)
Cell
, vol.133
, pp. 364-374
-
-
Fowlkes, C.C.1
Luengo Hendriks, C.L.2
Keränen, S.V.E.3
Weber, G.H.4
Rübel, O.5
Huang, M.-Y.6
Chatoor, S.7
DePace, A.H.8
Simirenko, L.9
Henriquez, C.10
-
21
-
-
79952983516
-
Mathematical modeling of gene expression: a guide for the perplexed biologist
-
Ay A., Arnosti D.N. Mathematical modeling of gene expression: a guide for the perplexed biologist. Crit Rev Biochem Mol Biol 2011, 46137-46151.
-
(2011)
Crit Rev Biochem Mol Biol
, pp. 46137-46151
-
-
Ay, A.1
Arnosti, D.N.2
-
22
-
-
77951259297
-
Challenges for modeling global gene regulatory networks during development: insights from Drosophila
-
Wilczynski B., Furlong E.E.M. Challenges for modeling global gene regulatory networks during development: insights from Drosophila. Developmental Biology 2010, 340:161-169.
-
(2010)
Developmental Biology
, vol.340
, pp. 161-169
-
-
Wilczynski, B.1
Furlong, E.E.M.2
-
23
-
-
79953674509
-
The formation of the bicoid morphogen gradient requires protein movement from anteriorly localized mRNA
-
Little S.C., Tkačik G., Kneeland T.B., Wieschaus E.F., Gregor T. The formation of the bicoid morphogen gradient requires protein movement from anteriorly localized mRNA. PLoS Biology 2011, 9:e1000596.
-
(2011)
PLoS Biology
, vol.9
-
-
Little, S.C.1
Tkačik, G.2
Kneeland, T.B.3
Wieschaus, E.F.4
Gregor, T.5
-
24
-
-
0013360501
-
Inheritance of egg size in Drosophila melanogaster
-
Warren D.C. Inheritance of egg size in Drosophila melanogaster. Genetics 1924, 9:41-69.
-
(1924)
Genetics
, vol.9
, pp. 41-69
-
-
Warren, D.C.1
-
26
-
-
29444460232
-
Diffusion and scaling during early embryonic pattern formation
-
Gregor T., Bialek W., de Ruyter van Steveninck R.R., Tank D.W., Wieschaus E.F. Diffusion and scaling during early embryonic pattern formation. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:18403-18407.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 18403-18407
-
-
Gregor, T.1
Bialek, W.2
de Ruyter van Steveninck, R.R.3
Tank, D.W.4
Wieschaus, E.F.5
-
28
-
-
78650957213
-
Artificial selection on egg size perturbs early pattern formation in Drosophila melanogaster
-
Miles C.M., Lott S.E., Hendriks C.L.L., Ludwig M.Z., Manu, WilliamsF C.L., Kreitman M. Artificial selection on egg size perturbs early pattern formation in Drosophila melanogaster. Evolution; international journal of organic evolution 2011, 65:33-42.
-
(2011)
Evolution; international journal of organic evolution
, vol.65
, pp. 33-42
-
-
Miles, C.M.1
Lott, S.E.2
Hendriks, C.L.L.3
Ludwig, M.Z.4
Manu5
WilliamsF, C.L.6
Kreitman, M.7
-
30
-
-
33750442876
-
Large-scale turnover of functional transcription factor binding sites in Drosophila
-
Moses A.M., Pollard D.A., Nix D.A., Iyer V.N., Li X.-Y., Biggin M.D., Eisen M.B. Large-scale turnover of functional transcription factor binding sites in Drosophila. PLoS Comput Biol 2006, 2:e130.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Moses, A.M.1
Pollard, D.A.2
Nix, D.A.3
Iyer, V.N.4
Li, X.-Y.5
Biggin, M.D.6
Eisen, M.B.7
-
31
-
-
71749103442
-
Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information
-
Meireles-Filho A.C.A., Stark A. Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information. Current Opinion in Genetics & Development 2009, 19:565-570.
-
(2009)
Current Opinion in Genetics & Development
, vol.19
, pp. 565-570
-
-
Meireles-Filho, A.C.A.1
Stark, A.2
-
32
-
-
75149143994
-
Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same
-
Weirauch M.T., Hughes T.R. Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same. Trends in Genetics: TIG 2010, 26:66-74.
-
(2010)
Trends in Genetics: TIG
, vol.26
, pp. 66-74
-
-
Weirauch, M.T.1
Hughes, T.R.2
-
33
-
-
79955623470
-
Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules
-
He B.Z., Holloway A.K., Maerkl S.J., Kreitman M. Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules. PLoS Genetics 2011, 7:e1002053.
-
(2011)
PLoS Genetics
, vol.7
-
-
He, B.Z.1
Holloway, A.K.2
Maerkl, S.J.3
Kreitman, M.4
-
34
-
-
59349120552
-
Evolution of regulatory sequences in 12 Drosophila species
-
Kim J., He X., Sinha S. Evolution of regulatory sequences in 12 Drosophila species. PLoS Genetics 2009, 5:e1000330.
-
(2009)
PLoS Genetics
, vol.5
-
-
Kim, J.1
He, X.2
Sinha, S.3
-
35
-
-
70449132583
-
Combinatorial binding predicts spatio-temporal cis-regulatory activity
-
Zinzen R.P., Girardot C., Gagneur J., Braun M., Furlong E.E.M. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature 2009, 462:65-70.
-
(2009)
Nature
, vol.462
, pp. 65-70
-
-
Zinzen, R.P.1
Girardot, C.2
Gagneur, J.3
Braun, M.4
Furlong, E.E.M.5
-
36
-
-
77950566643
-
Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species
-
Bradley R.K., Li X.-Y., Trapnell C., Davidson S., Pachter L., Chu H.C., Tonkin L.A., Biggin M.D., Eisen M.B. Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species. PLoS Biology 2010, 8:e1000343.
-
(2010)
PLoS Biology
, vol.8
-
-
Bradley, R.K.1
Li, X.-Y.2
Trapnell, C.3
Davidson, S.4
Pachter, L.5
Chu, H.C.6
Tonkin, L.A.7
Biggin, M.D.8
Eisen, M.B.9
-
38
-
-
34548281030
-
Imaging in Systems Biology
-
Megason S.G., Fraser S.E. Imaging in Systems Biology. Cell 2007, 130:784-795.
-
(2007)
Cell
, vol.130
, pp. 784-795
-
-
Megason, S.G.1
Fraser, S.E.2
-
39
-
-
77955640606
-
Fluorescent proteins and their applications in imaging living cells and tissues
-
Chudakov D.M., Matz M.V., Lukyanov S., Lukyanov K.A. Fluorescent proteins and their applications in imaging living cells and tissues. Physiological Reviews 2010, 90:1103-1163.
-
(2010)
Physiological Reviews
, vol.90
, pp. 1103-1163
-
-
Chudakov, D.M.1
Matz, M.V.2
Lukyanov, S.3
Lukyanov, K.A.4
-
44
-
-
3142624742
-
Integrating transcriptional and signalling networks during muscle development
-
Furlong E.E. Integrating transcriptional and signalling networks during muscle development. Current Opinion in Genetics & Development 2004, 14:343-350.
-
(2004)
Current Opinion in Genetics & Development
, vol.14
, pp. 343-350
-
-
Furlong, E.E.1
-
45
-
-
0037322317
-
Genetic control of Drosophila nerve cord development
-
Skeath J.B., Thor S. Genetic control of Drosophila nerve cord development. Current Opinion in Neurobiology 2003, 13:8-15.
-
(2003)
Current Opinion in Neurobiology
, vol.13
, pp. 8-15
-
-
Skeath, J.B.1
Thor, S.2
-
47
-
-
0028828137
-
New neuroblast markers and the origin of the aCC/pCC neurons in the Drosophila central nervous system
-
Broadus J., Skeath J.B., Spana E.P., Bossing T., Technau G., Doe C.Q. New neuroblast markers and the origin of the aCC/pCC neurons in the Drosophila central nervous system. Mechanisms of Development 1995, 53:393-402.
-
(1995)
Mechanisms of Development
, vol.53
, pp. 393-402
-
-
Broadus, J.1
Skeath, J.B.2
Spana, E.P.3
Bossing, T.4
Technau, G.5
Doe, C.Q.6
-
48
-
-
74549179119
-
Multi-step control of muscle diversity by Hox proteins in the Drosophila embryo
-
Enriquez J., Boukhatmi H., Dubois L., Philippakis A.A., Bulyk M.L., Michelson A.M., Crozatier M., Vincent A. Multi-step control of muscle diversity by Hox proteins in the Drosophila embryo. Development (Cambridge, England) 2010, 137:457-466.
-
(2010)
Development (Cambridge, England)
, vol.137
, pp. 457-466
-
-
Enriquez, J.1
Boukhatmi, H.2
Dubois, L.3
Philippakis, A.A.4
Bulyk, M.L.5
Michelson, A.M.6
Crozatier, M.7
Vincent, A.8
-
49
-
-
33645784376
-
An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes
-
Estrada B., Choe S.E., Gisselbrecht S.S., Michaud S., Raj L., Busser B.W., Halfon M.S., Church G.M., Michelson A.M. An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes. PLoS Genetics 2006, 2:e16.
-
(2006)
PLoS Genetics
, vol.2
-
-
Estrada, B.1
Choe, S.E.2
Gisselbrecht, S.S.3
Michaud, S.4
Raj, L.5
Busser, B.W.6
Halfon, M.S.7
Church, G.M.8
Michelson, A.M.9
-
51
-
-
49749085590
-
How Drosophila melanogaster forms its mechanoreceptors
-
Furman D.P., Bukharina T.A. How Drosophila melanogaster forms its mechanoreceptors. Current Genomics 2008, 9:312-323.
-
(2008)
Current Genomics
, vol.9
, pp. 312-323
-
-
Furman, D.P.1
Bukharina, T.A.2
-
52
-
-
0035427307
-
Wing disc development in the fly: the early stages
-
Klein T. Wing disc development in the fly: the early stages. Current Opinion in Genetics & Development 2001, 11:470-475.
-
(2001)
Current Opinion in Genetics & Development
, vol.11
, pp. 470-475
-
-
Klein, T.1
-
53
-
-
64249153206
-
The molecular circuitry governing retinal determination
-
Kumar J.P. The molecular circuitry governing retinal determination. Biochimica et Biophysica Acta 2009, 1789:306-314.
-
(2009)
Biochimica et Biophysica Acta
, vol.1789
, pp. 306-314
-
-
Kumar, J.P.1
-
54
-
-
0037092598
-
Retinal development in Drosophila: specifying the first neuron
-
Hsiung F., Moses K. Retinal development in Drosophila: specifying the first neuron. Human Molecular Genetics 2002, 11:1207-1214.
-
(2002)
Human Molecular Genetics
, vol.11
, pp. 1207-1214
-
-
Hsiung, F.1
Moses, K.2
|