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Volumn 8, Issue 11, 2013, Pages

Role of tumor necrosis factor-α in the human systemic endotoxin-induced transcriptome

Author keywords

[No Author keywords available]

Indexed keywords

ETANERCEPT; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; LIPOPOLYSACCHARIDE; PLACEBO; TRANSCRIPTOME; TUMOR NECROSIS FACTOR ALPHA;

EID: 84893178246     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0079051     Document Type: Article
Times cited : (17)

References (50)
  • 1
    • 85047692516 scopus 로고    scopus 로고
    • Signalling pathways of the TNF superfamily: A double-edged sword
    • Aggarwal BB (2003) Signalling pathways of the TNF superfamily: a double-edged sword. Nat Rev Immunology 3: 745-756.
    • (2003) Nat Rev Immunology , vol.3 , pp. 745-756
    • Aggarwal, B.B.1
  • 2
  • 3
    • 38549102077 scopus 로고    scopus 로고
    • TNF-mediated inflammatory disease
    • Bradley JR (2008) TNF-mediated inflammatory disease. J Pathol. 214: 149-160.
    • (2008) J Pathol , vol.214 , pp. 149-160
    • Bradley, J.R.1
  • 4
    • 0034913364 scopus 로고    scopus 로고
    • Anti-tumor necrosis factor therapy in sepsis: Update on clinical trials and lessons learned
    • Reinhart K, Karzai W (2001) Anti-tumor necrosis factor therapy in sepsis: update on clinical trials and lessons learned. Crit Care Med. 29: S121-125. (Pubitemid 32681594)
    • (2001) Critical Care Medicine , vol.29 , Issue.7 SUPPL.
    • Reinhart, K.1    Karzai, W.2
  • 5
    • 33646696885 scopus 로고    scopus 로고
    • Anti-TNF antibody therapy in rheumatoid arthritis and the risk of serious infections and malignancies: Systematic review and meta-analysis of rare harmful effects in randomized controlled trials
    • DOI 10.1001/jama.295.19.2275
    • Bongartz T, Sutton AJ, Sweeting MJ, Buchan I, Matteson EL, et al. (2006) Anti-TNF antibody therapy in rheumatoid arthritis and the risk of serious infections and malignancies: systematic review and meta-analysis of rare harmful effects in randomized controlled trials. JAMA 295: 2275-2285. (Pubitemid 43736578)
    • (2006) Journal of the American Medical Association , vol.295 , Issue.19 , pp. 2275-2285
    • Bongartz, T.1    Sutton, A.J.2    Sweeting, M.J.3    Buchan, I.4    Matteson, E.L.5    Montori, V.6
  • 6
    • 33750485302 scopus 로고    scopus 로고
    • Risk and prevention of tuberculosis and other serious opportunistic infections associated with the inhibition of tumor necrosis factor
    • Winthrop KL (2006) Risk and prevention of tuberculosis and other serious opportunistic infections associated with the inhibition of tumor necrosis factor. Nat Clin Pract Rheumatol 2: 602-610.
    • (2006) Nat Clin Pract Rheumatol , vol.2 , pp. 602-610
    • Winthrop, K.L.1
  • 7
    • 33646786804 scopus 로고    scopus 로고
    • Neutralization of tumor necrosis factor in preclinical models of sepsis
    • Lorente JA, Marshall JC (2005) Neutralization of tumor necrosis factor in preclinical models of sepsis. Shock 24 Suppl 1:107-119.
    • (2005) Shock , vol.24 , Issue.SUPPL. 1 , pp. 107-119
    • Lorente, J.A.1    Marshall, J.C.2
  • 8
  • 12
    • 57649155207 scopus 로고    scopus 로고
    • Tumor necrosis factor-alpha inhibition protects against endotoxin-induced endothelial glycocalyx perturbation
    • Nieuwdorp M, Meuwese MC, Mooij HL, van Lieshout MH, Hayden A, et al. (2009) Tumor necrosis factor-alpha inhibition protects against endotoxin-induced endothelial glycocalyx perturbation. Atherosclerosis 202: 296-303.
    • (2009) Atherosclerosis , vol.202 , pp. 296-303
    • Nieuwdorp, M.1    Meuwese, M.C.2    Mooij, H.L.3    Van Lieshout, M.H.4    Hayden, A.5
  • 14
    • 46249088370 scopus 로고    scopus 로고
    • lumi: A pipeline for processing Illumina microarray
    • DOI 10.1093/bioinformatics/btn224
    • Du P, Kibbe WA, Lin SM (2008) lumi: a pipeline for processing Illumina microarray. Bioinformatics 24: 1547-1548. (Pubitemid 351911712)
    • (2008) Bioinformatics , vol.24 , Issue.13 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 15
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5: R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 16
    • 14644430336 scopus 로고    scopus 로고
    • arrayMagic: Two-colour cDNA microarray quality control and preprocessing
    • DOI 10.1093/bioinformatics/bti052
    • Buness A, Huber W, Steiner K, Sültmann H, Poustka A (2005) arrayMagic: two-colour cDNA microarray quality control and preprocessing. Bioinformatics 21: 554-556. (Pubitemid 40310247)
    • (2005) Bioinformatics , vol.21 , Issue.4 , pp. 554-556
    • Buness, A.1    Huber, W.2    Steiner, K.3    Sultmann, H.4    Poustka, A.5
  • 17
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W, von Heydebreck A, Sültmann H, Poustka A, Vingron M (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18 Suppl 1: S96-104.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Huber, W.1    Von Heydebreck, A.2    Sültmann, H.3    Poustka, A.4    Vingron, M.5
  • 18
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • Langfelder P, Horvath S (2008) WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 9: 559.
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 19
    • 40049099114 scopus 로고    scopus 로고
    • Defining clusters from a hierarchical cluster tree: The Dynamic Tree Cut package for R
    • DOI 10.1093/bioinformatics/btm563
    • Langfelder P, Zhang B, Horvath S (2008) Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics 24: 719-720. (Pubitemid 351321220)
    • (2008) Bioinformatics , vol.24 , Issue.5 , pp. 719-720
    • Langfelder, P.1    Zhang, B.2    Horvath, S.3
  • 20
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • DOI 10.1126/science.1073374
    • Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabási AL (2002) Hierarchical organization of modularity in metabolic networks. Science 297: 1551-1555. (Pubitemid 34971002)
    • (2002) Science , vol.297 , Issue.5586 , pp. 1551-1555
    • Ravasz, E.1    Somera, A.L.2    Mongru, D.A.3    Oltvai, Z.N.4    Barabasi, A.-L.5
  • 21
    • 78650373804 scopus 로고    scopus 로고
    • Network medicine: A network-based approach to human disease
    • Barabási AL, Gulbahce N, Loscalzo J (2011) Network medicine: a network-based approach to human disease. Nat Rev Genet. 12: 56-68.
    • (2011) Nat Rev Genet , vol.12 , pp. 56-68
    • Barabási, A.L.1    Gulbahce, N.2    Loscalzo, J.3
  • 22
    • 50949084896 scopus 로고    scopus 로고
    • Geometric interpretation of gene coexpression network analysis
    • Horvath S, Dong J (2008) Geometric interpretation of gene coexpression network analysis. PLoS Comput Biol. 4: e1000117.
    • (2008) PLoS Comput Biol , vol.4
    • Horvath, S.1    Dong, J.2
  • 24
    • 67849130563 scopus 로고    scopus 로고
    • ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
    • Chen J, Bardes EE, Aronow BJ, Jegga AG (2009) ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res. 37: W305-311.
    • (2009) Nucleic Acids Res , vol.37
    • Chen, J.1    Bardes, E.E.2    Aronow, B.J.3    Jegga, A.G.4
  • 25
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene coexpression network analysis
    • Zhang B, Horvath S (2005) A general framework for weighted gene coexpression network analysis. Stat Appl Genet Mol Biol. 4: Article17.
    • (2005) Stat Appl Genet Mol Biol , vol.4 , pp. 17
    • Zhang, B.1    Horvath, S.2
  • 26
    • 77951274224 scopus 로고    scopus 로고
    • Weighted gene coexpression network analysis: State of the art
    • Zhao W, Langfelder P, Fuller T, Dong J, Li A, et al. (2010) Weighted gene coexpression network analysis: state of the art. J Biopharm Stat. 20: 281-300.
    • (2010) J Biopharm Stat , vol.20 , pp. 281-300
    • Zhao, W.1    Langfelder, P.2    Fuller, T.3    Dong, J.4    Li, A.5
  • 27
    • 52649097448 scopus 로고    scopus 로고
    • The Immunological Genome Project: Networks of gene expression in immune cells
    • Immunological Genome Project Consortium
    • Heng TS, Painter MW, Immunological Genome Project Consortium (2008) The Immunological Genome Project: networks of gene expression in immune cells. Nat Immunol. 9: 1091-1094.
    • (2008) Nat Immunol , vol.9 , pp. 1091-1094
    • Heng, T.S.1    Painter, M.W.2
  • 28
    • 0842265974 scopus 로고    scopus 로고
    • Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors
    • Kadonaga JT (2004) Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors. Cell. 116: 247-257.
    • (2004) Cell , vol.116 , pp. 247-257
    • Kadonaga, J.T.1
  • 29
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T (2007) Chromatin modifications and their function. Cell. 128: 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 30
    • 67649648237 scopus 로고    scopus 로고
    • Control of inducible gene expression by signal-dependent transcriptional elongation
    • Hargreaves DC, Horng T, Medzhitov R (2009) Control of inducible gene expression by signal-dependent transcriptional elongation. Cell. 138:129-45.
    • (2009) Cell , vol.138 , pp. 129-145
    • Hargreaves, D.C.1    Horng, T.2    Medzhitov, R.3
  • 31
    • 0028811230 scopus 로고
    • Effects of recombinant dimeric TNF receptor on human inflammatory responses following intravenous endotoxin administration
    • Suffredini AF, Reda D, Banks SM, Tropea M, Agosti JM, et al. (1995) Effects of recombinant dimeric TNF receptor on human inflammatory responses following intravenous endotoxin administration. J Immunol. 155:5038-5045.
    • (1995) J Immunol , vol.155 , pp. 5038-5045
    • Suffredini, A.F.1    Reda, D.2    Banks, S.M.3    Tropea, M.4    Agosti, J.M.5
  • 35
    • 4043065142 scopus 로고    scopus 로고
    • The Scavenger Receptor Cysteine-Rich (SRCR) domain: An ancient and highly conserved protein module of the innate immune system
    • Sarrias MR, Grønlund J, Padilla O, Madsen J, Holmskov U, et al. (2004) The Scavenger Receptor Cysteine-Rich (SRCR) domain: an ancient and highly conserved protein module of the innate immune system. Crit Rev Immunol. 24: 1-37. (Pubitemid 39655010)
    • (2004) Critical Reviews in Immunology , vol.24 , Issue.1 , pp. 1-37
    • Sarrias, M.R.1    Gronlund, J.2    Padilla, O.3    Madsen, J.4    Holmskov, U.5    Lozano, F.6
  • 38
    • 84874256945 scopus 로고    scopus 로고
    • Immunosuppression in sepsis: A novel understanding of the disorder and a new therapeutic approach
    • Hotchkiss RS, Monneret G, Payen D (2013) Immunosuppression in sepsis: a novel understanding of the disorder and a new therapeutic approach. Lancet Infect Dis. 13: 260-268.
    • (2013) Lancet Infect Dis , vol.13 , pp. 260-268
    • Hotchkiss, R.S.1    Monneret, G.2    Payen, D.3
  • 39
    • 0027536852 scopus 로고
    • The inducible transcription factor NF-kappa B: Structure-function relationship of its protein subunits
    • Grimm S, Baeuerle PA (1993) The inducible transcription factor NF-kappa B: structure-function relationship of its protein subunits. Biochem J. 290: 297-308. (Pubitemid 23094919)
    • (1993) Biochemical Journal , vol.290 , Issue.2 , pp. 297-308
    • Grimm, S.1    Baeuerle, P.A.2
  • 42
    • 38449086201 scopus 로고    scopus 로고
    • Induction of IRAK-M is associated with lipopolysaccharide tolerance in a human endotoxemia model
    • van't Veer C, van den Pangaart PS, van Zoelen MA, de Kruif M, Birjmohun RS, et al. (2007) Induction of IRAK-M is associated with lipopolysaccharide tolerance in a human endotoxemia model. J Immunol. 179: 7110-7120.
    • (2007) J Immunol , vol.179 , pp. 7110-7120
    • Van't Veer, C.1    Van Den Pangaart, P.S.2    Van Zoelen, M.A.3    De Kruif, M.4    Birjmohun, R.S.5
  • 43
    • 34250869345 scopus 로고    scopus 로고
    • Bench-to-bedside review: Endotoxin tolerance as a model of leukocyte reprogramming in sepsis
    • Cavaillon JM, Adib-Conquy M (2006) Bench-to-bedside review: endotoxin tolerance as a model of leukocyte reprogramming in sepsis. Crit Care. 10: 233.
    • (2006) Crit Care , vol.10 , pp. 233
    • Cavaillon, J.M.1    Adib-Conquy, M.2
  • 44
    • 33748567413 scopus 로고    scopus 로고
    • Toll-like receptor (TLR) response tolerance: A key physiological "damage limitation" Effect and an important potential opportunity for therapy
    • DOI 10.2174/092986706778201675
    • Broad A, Jones DE, Kirby JA (2006) Toll-like receptor (TLR) response tolerance: a key physiological "damage limitation" effect and an important potential opportunity for therapy. Curr Med Chem. 13: 2487-2502. (Pubitemid 44364151)
    • (2006) Current Medicinal Chemistry , vol.13 , Issue.21 , pp. 2487-2502
    • Broad, A.1    Jones, D.E.J.2    Kirby, J.A.3
  • 45
    • 0024428802 scopus 로고
    • Putative metal finger structure of the human immunodeficiency virus type 1 enhancer binding protein HIV-EP1
    • Maekawa T, Sakura H, Sudo T, Ishii S (1989) Putative metal finger structure of the human immunodeficiency virus type 1 enhancer binding protein HIV-EP1. J Biol Chem. 264: 14591-14593. (Pubitemid 19237266)
    • (1989) Journal of Biological Chemistry , vol.264 , Issue.25 , pp. 14591-14593
    • Maekawa, T.1    Sakura, H.2    Sudo, T.3    Ishii, S.4
  • 46
    • 70349443224 scopus 로고    scopus 로고
    • Transcriptional control of the inflammatory response
    • Medzhitov R, Horng T (2009) Transcriptional control of the inflammatory response. Nat Rev Immunol. 9: 692-703.
    • (2009) Nat Rev Immunol , vol.9 , pp. 692-703
    • Medzhitov, R.1    Horng, T.2
  • 47
    • 78650806593 scopus 로고    scopus 로고
    • Suppression of inflammation by a synthetic histone mimic
    • Nicodeme E, Jeffrey KL, Schaefer U, Beinke S, Dewell S, et al. (2010) Suppression of inflammation by a synthetic histone mimic. Nature. 468:1119-1123.
    • (2010) Nature , vol.468 , pp. 1119-1123
    • Nicodeme, E.1    Jeffrey, K.L.2    Schaefer, U.3    Beinke, S.4    Dewell, S.5
  • 49
    • 84867897328 scopus 로고    scopus 로고
    • Interleukin-27 is a novel candidate diagnostic biomarker for bacterial infection in critically ill children
    • Wong HR, Cvijanovich NZ, Hall M, Allen GL, Thomas NJ, et al. (2012) Interleukin-27 is a novel candidate diagnostic biomarker for bacterial infection in critically ill children. Crit Care. 16: R213.
    • (2012) Crit Care , vol.16
    • Wong, H.R.1    Cvijanovich, N.Z.2    Hall, M.3    Allen, G.L.4    Thomas, N.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.