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Volumn 10, Issue 12, 2013, Pages 1-12

HIV-1 Transmission during Early Infection in Men Who Have Sex with Men: A Phylodynamic Analysis

Author keywords

[No Author keywords available]

Indexed keywords

ACQUIRED IMMUNE DEFICIENCY SYNDROME; ARTICLE; CD4 T CELL COUNT TEST; DISEASE SURVEILLANCE; DISEASE TRANSMISSION; GENE INSERTION SEQUENCE; GENETIC VARIABILITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; INFORMATION PROCESSING; MAJOR CLINICAL STUDY; MALE; MEN WHO HAVE SEX WITH MEN; MORBIDITY; PHYLOGENY; PREVALENCE; PUBLIC HEALTH PROBLEM; UNSAFE SEX; CLASSIFICATION; GENETICS; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MALE HOMOSEXUALITY; PATHOGENICITY; STATISTICS; VIROLOGY;

EID: 84892718307     PISSN: 15491277     EISSN: 15491676     Source Type: Journal    
DOI: 10.1371/journal.pmed.1001568     Document Type: Article
Times cited : (102)

References (54)
  • 1
    • 80051633217 scopus 로고    scopus 로고
    • Prevention of HIV-1 infection with early antiretroviral therapy
    • Cohen M, Chen Y, McCauley M, Gamble T, Hosseinipour M, et al. (2011) Prevention of HIV-1 infection with early antiretroviral therapy. N Engl J Med 365: 493-505.
    • (2011) N Engl J Med , vol.365 , pp. 493-505
    • Cohen, M.1    Chen, Y.2    McCauley, M.3    Gamble, T.4    Hosseinipour, M.5
  • 3
    • 2142807626 scopus 로고    scopus 로고
    • Brief but efficient: acute HIV infection and the sexual transmission of HIV
    • Pilcher C, Tien H, Eron J Jr, Vernazza P, Leu S, et al. (2004) Brief but efficient: acute HIV infection and the sexual transmission of HIV. J Infect Dis 189: 1785-1792.
    • (2004) J Infect Dis , vol.189 , pp. 1785-1792
    • Pilcher, C.1    Tien, H.2    Eron Jr., J.3    Vernazza, P.4    Leu, S.5
  • 4
    • 58149197855 scopus 로고    scopus 로고
    • Revised surveillance case definitions for HIV infection among adults, adolescents, and children aged <18 months and for HIV infection and AIDS among children aged 18 months to <13 years-United States, 2008
    • Schneider E, Whitmore S, Glynn K, Dominguez K, Mitsch A, et al. (2008) Revised surveillance case definitions for HIV infection among adults, adolescents, and children aged <18 months and for HIV infection and AIDS among children aged 18 months to <13 years-United States, 2008. MMWR Recomm Rep 57: 1-12.
    • (2008) MMWR Recomm Rep , vol.57 , pp. 1-12
    • Schneider, E.1    Whitmore, S.2    Glynn, K.3    Dominguez, K.4    Mitsch, A.5
  • 5
    • 79960362331 scopus 로고    scopus 로고
    • The role of acute and early HIV infection in the spread of HIV and implications for transmission prevention strategies in Lilongwe, Malawi: a modelling study
    • Powers K, Ghani A, Miller W, Hoffman I, Pettifor A, et al. (2011) The role of acute and early HIV infection in the spread of HIV and implications for transmission prevention strategies in Lilongwe, Malawi: a modelling study. Lancet 378: 256-268.
    • (2011) Lancet , vol.378 , pp. 256-268
    • Powers, K.1    Ghani, A.2    Miller, W.3    Hoffman, I.4    Pettifor, A.5
  • 7
    • 0242535591 scopus 로고    scopus 로고
    • Measuring the infectiousness of persons with HIV-1: opportunities for preventing sexual HIV-1 transmission
    • Baeten J, Overbaugh J, (2003) Measuring the infectiousness of persons with HIV-1: opportunities for preventing sexual HIV-1 transmission. Curr HIV Res 1: 69-89.
    • (2003) Curr HIV Res , vol.1 , pp. 69-89
    • Baeten, J.1    Overbaugh, J.2
  • 8
    • 0035857959 scopus 로고    scopus 로고
    • Probability of HIV-1 transmission per coital act in monogamous, heterosexual, HIV-1-discordant couples in Rakai, Uganda
    • Gray R, Wawer M, Brookmeyer R, Sewankambo N, Serwadda D, et al. (2001) Probability of HIV-1 transmission per coital act in monogamous, heterosexual, HIV-1-discordant couples in Rakai, Uganda. Lancet 357: 1149-1153.
    • (2001) Lancet , vol.357 , pp. 1149-1153
    • Gray, R.1    Wawer, M.2    Brookmeyer, R.3    Sewankambo, N.4    Serwadda, D.5
  • 9
    • 51849125864 scopus 로고    scopus 로고
    • Estimating HIV incidence in the United States from HIV/AIDS surveillance data and biomarker HIV test results
    • Karon J, Song R, Brookmeyer R, Kaplan E, Hall H, (2008) Estimating HIV incidence in the United States from HIV/AIDS surveillance data and biomarker HIV test results. Stat Med 27: 4617-4633.
    • (2008) Stat Med , vol.27 , pp. 4617-4633
    • Karon, J.1    Song, R.2    Brookmeyer, R.3    Kaplan, E.4    Hall, H.5
  • 10
    • 79961057113 scopus 로고    scopus 로고
    • Estimated HIV incidence in the United States, 2006-2009
    • doi:10.1371/journal.pone.0017502
    • Prejean J, Song R, Hernandez A, Ziebell R, Green T, et al. (2011) Estimated HIV incidence in the United States, 2006-2009. PLoS ONE 6: e17502 doi:10.1371/journal.pone.0017502.
    • (2011) PLoS ONE , vol.6
    • Prejean, J.1    Song, R.2    Hernandez, A.3    Ziebell, R.4    Green, T.5
  • 11
    • 78650921515 scopus 로고    scopus 로고
    • National estimate of HIV prevalence in the Netherlands: comparison and applicability of different estimation tools
    • van Veen MG, Presanis AM, Conti S, Xiridou M, Stengaard AR, et al. (2011) National estimate of HIV prevalence in the Netherlands: comparison and applicability of different estimation tools. AIDS 25: 229-237.
    • (2011) AIDS , vol.25 , pp. 229-237
    • van Veen, M.G.1    Presanis, A.M.2    Conti, S.3    Xiridou, M.4    Stengaard, A.R.5
  • 12
    • 77953613035 scopus 로고    scopus 로고
    • 27 years of the HIV epidemic amongst men having sex with men in the Netherlands: an in depth mathematical model-based analysis
    • Bezemer D, de Wolf F, Boerlijst M, van Sighem A, Hollingsworth T, et al. (2010) 27 years of the HIV epidemic amongst men having sex with men in the Netherlands: an in depth mathematical model-based analysis. Epidemics 2: 66-79.
    • (2010) Epidemics , vol.2 , pp. 66-79
    • Bezemer, D.1    de Wolf, F.2    Boerlijst, M.3    van Sighem, A.4    Hollingsworth, T.5
  • 13
    • 12144254038 scopus 로고    scopus 로고
    • Transmission of HIV-1 during primary infection: relationship to sexual risk and sexually transmitted infections
    • Pao D, Fisher M, Hué S, Dean G, Murphy G, et al. (2005) Transmission of HIV-1 during primary infection: relationship to sexual risk and sexually transmitted infections. AIDS 19: 85-90.
    • (2005) AIDS , vol.19 , pp. 85-90
    • Pao, D.1    Fisher, M.2    Hué, S.3    Dean, G.4    Murphy, G.5
  • 14
    • 68449091365 scopus 로고    scopus 로고
    • The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection
    • Yerly S, Junier T, Gayet-Ageron A, Amari E, von Wyl V, et al. (2009) The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection. AIDS 23: 1415-1423.
    • (2009) AIDS , vol.23 , pp. 1415-1423
    • Yerly, S.1    Junier, T.2    Gayet-Ageron, A.3    Amari, E.4    von Wyl, V.5
  • 15
    • 67651153024 scopus 로고    scopus 로고
    • HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain
    • Cuevas M, Muñoz-Nieto M, Thomson M, Delgado E, Iribarren J, et al. (2009) HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain. J Acquir Immune Defic Syndr 51: 99-103.
    • (2009) J Acquir Immune Defic Syndr , vol.51 , pp. 99-103
    • Cuevas, M.1    Muñoz-Nieto, M.2    Thomson, M.3    Delgado, E.4    Iribarren, J.5
  • 16
    • 84866659989 scopus 로고    scopus 로고
    • Characterizing HIV transmission networks across the United States
    • Aldous J, Pond S, Poon A, Jain S, Qin H, et al. (2012) Characterizing HIV transmission networks across the United States. Clin Infect Dis 55: 1135-1143.
    • (2012) Clin Infect Dis , vol.55 , pp. 1135-1143
    • Aldous, J.1    Pond, S.2    Poon, A.3    Jain, S.4    Qin, H.5
  • 17
    • 84864075429 scopus 로고    scopus 로고
    • Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection
    • doi:10.1371/journal.pcbi.1002552
    • Volz E, Koopman J, Ward M, Brown A, Frost S, (2012) Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection. PLoS Comput Biol 8: e1002552 doi:10.1371/journal.pcbi.1002552.
    • (2012) PLoS Comput Biol , vol.8
    • Volz, E.1    Koopman, J.2    Ward, M.3    Brown, A.4    Frost, S.5
  • 18
    • 84855467207 scopus 로고    scopus 로고
    • Complex population dynamics and the coalescent under neutrality
    • Volz E, (2012) Complex population dynamics and the coalescent under neutrality. Genetics 190: 187-201.
    • (2012) Genetics , vol.190 , pp. 187-201
    • Volz, E.1
  • 19
    • 77954337309 scopus 로고    scopus 로고
    • Viral phylodynamics and the search for an 'effective number of infections
    • Frost S, Volz E, (2010) Viral phylodynamics and the search for an 'effective number of infections'. Philos Trans R Soc Lond B Biol Sci 365: 1879-1890.
    • (2010) Philos Trans R Soc Lond B Biol Sci , vol.365 , pp. 1879-1890
    • Frost, S.1    Volz, E.2
  • 20
  • 21
    • 84858420452 scopus 로고    scopus 로고
    • Estimating the basic reproductive number from viral sequence data
    • Stadler T, Kouyos R, von Wyl V, Yerly S, Böni J, et al. (2012) Estimating the basic reproductive number from viral sequence data. Mol Biol Evol 29: 347-357.
    • (2012) Mol Biol Evol , vol.29 , pp. 347-357
    • Stadler, T.1    Kouyos, R.2    von Wyl, V.3    Yerly, S.4    Böni, J.5
  • 22
    • 33344465800 scopus 로고    scopus 로고
    • Relaxed phylogenetics and dating with confidence
    • doi:10.1371/journal.pbio.0040088
    • Drummond A, Ho S, Phillips M, Rambaut A, (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: e88 doi:10.1371/journal.pbio.0040088.
    • (2006) PLoS Biol , vol.4
    • Drummond, A.1    Ho, S.2    Phillips, M.3    Rambaut, A.4
  • 23
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.1    Rambaut, A.2
  • 24
    • 58149175798 scopus 로고    scopus 로고
    • Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression
    • doi:10.1371/journal.pcbi.1000240
    • Lee H, Perelson A, Park S, Leitner T, (2008) Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression. PLoS Comput Biol 4: e1000240 doi:10.1371/journal.pcbi.1000240.
    • (2008) PLoS Comput Biol , vol.4
    • Lee, H.1    Perelson, A.2    Park, S.3    Leitner, T.4
  • 25
    • 84892890248 scopus 로고    scopus 로고
    • [computer program]. Available:. Accessed 4 November 2013
    • Rambaut A (2011). Path-O-Gen [computer program]. Available: http://tree.bio.ed.ac.uk/software/pathogen/. Accessed 4 November 2013.
    • (2011) Path-O-Gen
    • Rambaut, A.1
  • 26
    • 73449085165 scopus 로고    scopus 로고
    • An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1
    • doi:10.1371/journal.pcbi.1000581
    • Pond S, Posada D, Stawiski E, Chappey C, Poon A, et al. (2009) An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. PLoS Comput Biol 5: e1000581 doi:10.1371/journal.pcbi.1000581.
    • (2009) PLoS Comput Biol , vol.5
    • Pond, S.1    Posada, D.2    Stawiski, E.3    Chappey, C.4    Poon, A.5
  • 27
    • 62749200513 scopus 로고    scopus 로고
    • Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update
    • doi:10.1371/journal.pone.0004724
    • Bennett D, Camacho R, Otelea D, Kuritzkes D, Fleury H, et al. (2009) Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update. PLoS ONE 4: e4724 doi:10.1371/journal.pone.0004724.
    • (2009) PLoS ONE , vol.4
    • Bennett, D.1    Camacho, R.2    Otelea, D.3    Kuritzkes, D.4    Fleury, H.5
  • 28
    • 33746272317 scopus 로고    scopus 로고
    • Hyphy: hypothesis testing using phylogenies
    • In: Nielsen R, editor
    • Pond S, Muse S (2005) Hyphy: hypothesis testing using phylogenies. In: Nielsen R, editor. Statistical methods in molecular evolution. pp. 125-181.
    • (2005) Statistical methods in molecular evolution , pp. 125-181
    • Pond, S.1    Muse, S.2
  • 29
    • 84892839418 scopus 로고    scopus 로고
    • Los Alamos National Laboratory, Available:. Accessed 4 November 2013
    • Los Alamos National Laboratory (2011) Quality control: HIV-1 sequence quality analysis. Available: http://www.hiv.lanl.gov/content/sequence/QC/index.html. Accessed 4 November 2013.
    • (2011) Quality control: HIV-1 sequence quality analysis
  • 30
    • 79951814460 scopus 로고    scopus 로고
    • Flexible epidemiological model for estimates and short-term projections in generalised HIV/AIDS epidemics
    • Hogan D, Zaslavsky A, Hammitt J, Salomon J, (2010) Flexible epidemiological model for estimates and short-term projections in generalised HIV/AIDS epidemics. Sex Transm Infect 86: ii84-ii92.
    • (2010) Sex Transm Infect , vol.86
    • Hogan, D.1    Zaslavsky, A.2    Hammitt, J.3    Salomon, J.4
  • 31
    • 85007058492 scopus 로고    scopus 로고
    • Using HIV diagnostic data to estimate HIV incidence: method and simulation
    • Yan P, Zhang F, Wand H, (2011) Using HIV diagnostic data to estimate HIV incidence: method and simulation. Stat Commun Infect Dis 3: 1-28.
    • (2011) Stat Commun Infect Dis , vol.3 , pp. 1-28
    • Yan, P.1    Zhang, F.2    Wand, H.3
  • 32
    • 79951832982 scopus 로고    scopus 로고
    • Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection
    • Kouyos R, von Wyl V, Yerly S, Böni J, Rieder P, et al. (2011) Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clin Infect Dis 52: 532-539.
    • (2011) Clin Infect Dis , vol.52 , pp. 532-539
    • Kouyos, R.1    von Wyl, V.2    Yerly, S.3    Böni, J.4    Rieder, P.5
  • 33
    • 80052336720 scopus 로고    scopus 로고
    • Inference for nonlinear epidemiological models using genealogies and time series
    • doi:10.1371/journal.pcbi.1002136
    • Rasmussen D, Ratmann O, Koelle K, (2011) Inference for nonlinear epidemiological models using genealogies and time series. PLoS Comput Biol 7: e1002136 doi:10.1371/journal.pcbi.1002136.
    • (2011) PLoS Comput Biol , vol.7
    • Rasmussen, D.1    Ratmann, O.2    Koelle, K.3
  • 34
    • 0027422278 scopus 로고
    • Genotypic and phenotypic characterization of HIV-1 patients with primary infection
    • Zhu T, Mo H, Wang N, Nam D, Cao Y, et al. (1993) Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 261: 1179-1181.
    • (1993) Science , vol.261 , pp. 1179-1181
    • Zhu, T.1    Mo, H.2    Wang, N.3    Nam, D.4    Cao, Y.5
  • 35
    • 0032844525 scopus 로고    scopus 로고
    • The molecular clock of HIV-1 unveiled through analysis of a known transmission history
    • Leitner T, Albert J, (1999) The molecular clock of HIV-1 unveiled through analysis of a known transmission history. Proc Natl Acad Sci U S A 96: 10752-10757.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 10752-10757
    • Leitner, T.1    Albert, J.2
  • 36
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team, R Vienna: Foundation for Statistical Computing. Available:. Accessed 4 November 2013
    • R Core Team (2012) R: a language and environment for statistical computing. R Vienna: Foundation for Statistical Computing. Available: http://www.R-project.org/. Accessed 4 November 2013.
    • (2012) R: A language and environment for statistical computing
  • 38
    • 33745443769 scopus 로고    scopus 로고
    • Estimating sexual transmission of HIV from persons aware and unaware that they are infected with the virus in the USA
    • Marks G, Crepaz N, Janssen R, (2006) Estimating sexual transmission of HIV from persons aware and unaware that they are infected with the virus in the USA. AIDS 20: 1447-1450.
    • (2006) AIDS , vol.20 , pp. 1447-1450
    • Marks, G.1    Crepaz, N.2    Janssen, R.3
  • 39
    • 77950199800 scopus 로고    scopus 로고
    • Undiagnosed HIV prevalence among adults and adolescents in the United States at the end of 2006
    • Campsmith M, Rhodes P, Hall H, Green T, (2010) Undiagnosed HIV prevalence among adults and adolescents in the United States at the end of 2006. J Acquir Immune Defic Syndr 53: 619-624.
    • (2010) J Acquir Immune Defic Syndr , vol.53 , pp. 619-624
    • Campsmith, M.1    Rhodes, P.2    Hall, H.3    Green, T.4
  • 40
    • 84882977911 scopus 로고    scopus 로고
    • Treatment as prevention: toward an AIDS-free generation
    • Montaner JS, (2013) Treatment as prevention: toward an AIDS-free generation. Top Antivir Med 21: 110-114.
    • (2013) Top Antivir Med , vol.21 , pp. 110-114
    • Montaner, J.S.1
  • 41
    • 84864476583 scopus 로고    scopus 로고
    • HIV treatment as prevention: debate and commentary-will early infection compromise treatment-as-prevention strategies?
    • doi:10.1371/journal.pmed.1001232
    • Cohen MS, Dye C, Fraser C, Miller WC, Powers KA, et al. (2012) HIV treatment as prevention: debate and commentary-will early infection compromise treatment-as-prevention strategies? PLoS Med 9: e1001232 doi:10.1371/journal.pmed.1001232.
    • (2012) PLoS Med , vol.9
    • Cohen, M.S.1    Dye, C.2    Fraser, C.3    Miller, W.C.4    Powers, K.A.5
  • 42
    • 84873467155 scopus 로고    scopus 로고
    • Episodic HIV risk behavior can greatly amplify HIV prevalence and the fraction of transmissions from acute HIV infection
    • Zhang X, Zhong L, Romero-Severson E, Alam SJ, Henry CJ, et al. (2012) Episodic HIV risk behavior can greatly amplify HIV prevalence and the fraction of transmissions from acute HIV infection. Stat Commun Infect Dis 4: 1041.
    • (2012) Stat Commun Infect Dis , vol.4 , pp. 1041
    • Zhang, X.1    Zhong, L.2    Romero-Severson, E.3    Alam, S.J.4    Henry, C.J.5
  • 43
    • 77954051000 scopus 로고    scopus 로고
    • High multiplicity infection by HIV-1 in men who have sex with men
    • doi:10.1371/journal.ppat.1000890
    • Li H, Bar K, Wang S, Decker J, Chen Y, et al. (2010) High multiplicity infection by HIV-1 in men who have sex with men. PLoS Pathog 6: e1000890 doi:10.1371/journal.ppat.1000890.
    • (2010) PLoS Pathog , vol.6
    • Li, H.1    Bar, K.2    Wang, S.3    Decker, J.4    Chen, Y.5
  • 44
    • 77957901912 scopus 로고    scopus 로고
    • Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing
    • doi:10.1371/journal.pone.0012303
    • Fischer W, Ganusov V, Giorgi E, Hraber P, Keele B, et al. (2010) Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing. PLoS ONE 5: e12303 doi:10.1371/journal.pone.0012303.
    • (2010) PLoS ONE , vol.5
    • Fischer, W.1    Ganusov, V.2    Giorgi, E.3    Hraber, P.4    Keele, B.5
  • 45
    • 34247646458 scopus 로고    scopus 로고
    • HIV-1 co-infection prevalence in two cohorts of early HIV-1 seroconverters in France
    • Courgnaud V, Seng R, Becquart P, Boulahtouf A, Rouzioux C, et al. (2007) HIV-1 co-infection prevalence in two cohorts of early HIV-1 seroconverters in France. AIDS 21: 1055-1056.
    • (2007) AIDS , vol.21 , pp. 1055-1056
    • Courgnaud, V.1    Seng, R.2    Becquart, P.3    Boulahtouf, A.4    Rouzioux, C.5
  • 46
    • 63649130943 scopus 로고    scopus 로고
    • Incidence of human immunodeficiency virus type 1 dual infections in Amsterdam, The Netherlands, during 2003-2007
    • van der Kuyl A, Zorgdrager F, Jurriaans S, Back N, Prins J, et al. (2009) Incidence of human immunodeficiency virus type 1 dual infections in Amsterdam, The Netherlands, during 2003-2007. Clin Infect Dis 48: 973-978.
    • (2009) Clin Infect Dis , vol.48 , pp. 973-978
    • van der Kuyl, A.1    Zorgdrager, F.2    Jurriaans, S.3    Back, N.4    Prins, J.5
  • 48
    • 84862857091 scopus 로고    scopus 로고
    • The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda
    • Redd A, Mullis C, Serwadda D, Kong X, Martens C, et al. (2012) The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda. J Infect Dis 206: 267-274.
    • (2012) J Infect Dis , vol.206 , pp. 267-274
    • Redd, A.1    Mullis, C.2    Serwadda, D.3    Kong, X.4    Martens, C.5
  • 49
    • 0032710838 scopus 로고    scopus 로고
    • Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
    • Shankarappa R, Margolick J, Gange S, Rodrigo A, Upchurch D, et al. (1999) Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J Virol 73: 10489-10502.
    • (1999) J Virol , vol.73 , pp. 10489-10502
    • Shankarappa, R.1    Margolick, J.2    Gange, S.3    Rodrigo, A.4    Upchurch, D.5
  • 50
    • 33847246314 scopus 로고    scopus 로고
    • Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics
    • doi:10.1371/journal.pcbi.0030029
    • Lemey P, Pond SLK, Drummond AJ, Pybus OG, Shapiro B, et al. (2007) Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics. PLoS Comput Biol 3: e29 doi:10.1371/journal.pcbi.0030029.
    • (2007) PLoS Comput Biol , vol.3
    • Lemey, P.1    Pond, S.L.K.2    Drummond, A.J.3    Pybus, O.G.4    Shapiro, B.5
  • 51
    • 81155162630 scopus 로고    scopus 로고
    • Dates of HIV infection can be estimated for seroprevalent patients by coalescent analysis of serial next-generation sequencing data
    • Poon A, McGovern R, Mo T, Knapp D, Brenner B, et al. (2011) Dates of HIV infection can be estimated for seroprevalent patients by coalescent analysis of serial next-generation sequencing data. AIDS 25: 2019-2026.
    • (2011) AIDS , vol.25 , pp. 2019-2026
    • Poon, A.1    McGovern, R.2    Mo, T.3    Knapp, D.4    Brenner, B.5
  • 52
    • 84861162090 scopus 로고    scopus 로고
    • Inferring epidemic contact structure from phylogenetic trees
    • doi:10.1371/journal.pcbi.1002413
    • Leventhal GE, Kouyos R, Stadler T, von Wyl V, Yerly S, et al. (2012) Inferring epidemic contact structure from phylogenetic trees. PLoS Comput Biol 8: e1002413 doi:10.1371/journal.pcbi.1002413.
    • (2012) PLoS Comput Biol , vol.8
    • Leventhal, G.E.1    Kouyos, R.2    Stadler, T.3    von Wyl, V.4    Yerly, S.5
  • 53
    • 84880494037 scopus 로고    scopus 로고
    • Modelling tree shape and structure in viral phylodynamics
    • Frost SD, Volz EM, (2013) Modelling tree shape and structure in viral phylodynamics. Philos Trans R Soc Lond B Biol Sci 368: 20120208.
    • (2013) Philos Trans R Soc Lond B Biol Sci , vol.368 , pp. 20120208
    • Frost, S.D.1    Volz, E.M.2
  • 54
    • 80053427855 scopus 로고    scopus 로고
    • Transmission network parameters estimated from HIV sequences for a nationwide epidemic
    • Brown AJL, Lycett SJ, Weinert L, Hughes GJ, Fearnhill E, et al. (2011) Transmission network parameters estimated from HIV sequences for a nationwide epidemic. J Infect Dis 204: 1463-1469.
    • (2011) J Infect Dis , vol.204 , pp. 1463-1469
    • Brown, A.J.L.1    Lycett, S.J.2    Weinert, L.3    Hughes, G.J.4    Fearnhill, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.