메뉴 건너뛰기




Volumn 183, Issue 4, 2009, Pages 1421-1430

Phylodynamics of infectious disease epidemics

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLUSTER ANALYSIS; DEMOGRAPHY; EPIDEMIC; GENE SEQUENCE; HUMAN IMMUNODEFICIENCY VIRUS; INFECTION; INFECTION SENSITIVITY; MATHEMATICAL MODEL; PHYLOGENY; POPULATION GENETICS; POPULATION SIZE; PREVALENCE; PRIORITY JOURNAL; STANDARD; UNITED STATES; VIRUS GENE;

EID: 71549158510     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.109.106021     Document Type: Article
Times cited : (178)

References (31)
  • 4
    • 33947375214 scopus 로고    scopus 로고
    • High rates of forward transmission events after acute/early HIV-1 infection
    • BRENNER, B. G., M. ROGER, J. ROUTY, D. MOISI, M. NTEMGWA et al., 2007 High rates of forward transmission events after acute/early HIV-1 infection. J. Infect. Dis. 195: 951.
    • (2007) J. Infect. Dis. , vol.195 , pp. 951
    • Brenner, B.G.1    Roger, M.2    Routy, J.3    Moisi, D.4    Ntemgwa, M.5
  • 5
    • 0033375224 scopus 로고    scopus 로고
    • Sequence clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy
    • BROWN, A. J., H. F. GÜNTHARD, J. K. WONG, R. T. D'AQUILA, V. A. JOHNSON et al., 1999 Sequence clusters in human immunodeficiency virus type 1 reverse transcriptase are associated with subsequent virological response to antiretroviral therapy. J. Infect. Dis. 180: 1043-1049.
    • (1999) J. Infect. Dis. , vol.180 , pp. 1043-1049
    • Brown, A.J.1    Günthard, H.F.2    Wong, J.K.3    D'Aquila, R.T.4    Johnson, V.A.5
  • 6
    • 0030317268 scopus 로고    scopus 로고
    • Nevirapine, zidovudine, and didanosine compared with zidovudine and didanosine in patients with HIV-1 infection: A randomized, double-blind, placebo-controlled trial
    • D'AQUILA, R. T., M. D. HUGHES, V. A. JOHNSON, M. A. FISCHL, J. P. SOMMADOSSI et al., 1996 Nevirapine, zidovudine, and didanosine compared with zidovudine and didanosine in patients with HIV-1 infection: a randomized, double-blind, placebo-controlled trial. Ann. Intern. Med. 124: 1019-1030.
    • (1996) Ann. Intern. Med. , vol.124 , pp. 1019-1030
    • D'Aquila, R.T.1    Hughes, M.D.2    Johnson, V.A.3    Fischl, M.A.4    Sommadossi, J.P.5
  • 7
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • DRUMMOND, A. J., A. RAMBAUT, B. SHAPIRO and O. G. PYBUS, 2005 Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22: 1185-1192.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 8
    • 57049161939 scopus 로고    scopus 로고
    • Sexual networks and the transmission of drug-resistant HIV
    • DRUMRIGHT, L. N., and S. D. W. FROST, 2008 Sexual networks and the transmission of drug-resistant HIV. Curr. Opin. Infect. Dis. 21: 644.
    • (2008) Curr. Opin. Infect. Dis. , vol.21 , pp. 644
    • Drumright, L.N.1    Frost, S.D.W.2
  • 9
    • 33646487014 scopus 로고    scopus 로고
    • Exact coalescent for the Wright-Fisher model
    • FU, Y., 2006 Exact coalescent for the Wright-Fisher model. Theor. Popul. Biol. 69: 385-394.
    • (2006) Theor. Popul. Biol. , vol.69 , pp. 385-394
    • Fu, Y.1
  • 10
    • 33646199589 scopus 로고    scopus 로고
    • Assessing the effects of human mixing patterns on HIV-1 interhost phylogenetics through social network simulation
    • GOODREAU, S. M., 2006 Assessing the effects of human mixing patterns on HIV-1 interhost phylogenetics through social network simulation. Genetics 172: 2033-2045.
    • (2006) Genetics , vol.172 , pp. 2033-2045
    • Goodreau, S.M.1
  • 11
    • 0346373759 scopus 로고    scopus 로고
    • Unifying the epidemiological and evolutionary dynamics of pathogens
    • GRENFELL, B. T., O. G. PYBUS, J. R. GOG, J. L. N. WOOD, J. M. DALY et al., 2004 Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303: 327.
    • (2004) Science , vol.303 , pp. 327
    • Grenfell, B.T.1    Pybus, O.G.2    Gog, J.R.3    Wood, J.L.N.4    Daly, J.M.5
  • 12
    • 0028782096 scopus 로고
    • Sampling theory for neutral alleles in a varying environment
    • GRIFFITHS, R. C., and S. TAVARE, 1994 Sampling theory for neutral alleles in a varying environment. Philos. Trans. R. Soc. B Biol. Sci. 344: 403-410.
    • (1994) Philos. Trans. R. Soc. B Biol. Sci. , vol.344 , pp. 403-410
    • Griffiths, R.C.1    Tavare, S.2
  • 14
    • 15444367844 scopus 로고    scopus 로고
    • Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups
    • HUE, S., D. PILLAY, J. P. CLEWLEY and O. G. PYBUS, 2005 Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups. Proc. Natl. Acad. Sci. USA 102: 4425-4429.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 4425-4429
    • Hue, S.1    Pillay, D.2    Clewley, J.P.3    Pybus, O.G.4
  • 15
    • 0037573260 scopus 로고    scopus 로고
    • The coalescent process in a population with stochastically varying size
    • KAJ, I., and S. M. KRONE, 2003 The coalescent process in a population with stochastically varying size. J. Appl. Probab. 40: 33-48.
    • (2003) J. Appl. Probab. , vol.40 , pp. 33-48
    • Kaj, I.1    Krone, S.M.2
  • 17
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • KINGMAN, J. F. C., 1982a On the genealogy of large populations. J. Appl. Probab. 19: 27-43.
    • (1982) J. Appl. Probab. , vol.19 , pp. 27-43
    • Kingman, J.F.C.1
  • 19
    • 0029908281 scopus 로고    scopus 로고
    • Genetic patterns suggest exponential population growth in a declining species
    • LAVERY, S., C. MORITZ and D. R. FIELDER, 1996 Genetic patterns suggest exponential population growth in a declining species. Mol. Biol. Evol. 13: 1106-1113.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1106-1113
    • Lavery, S.1    Moritz, C.2    Fielder, D.R.3
  • 21
    • 0003841510 scopus 로고    scopus 로고
    • Inferring population history from molecular phylogenies
    • edited by P. H. HARVEY, A. J. LEIGH BROWN, J. MAYNARD SMITH and S. NEE. Oxford University Press, Oxford
    • NEE, S., E. C. HOLMES, A. RAMBAUT and P. H. HARVEY, 1996 Inferring population history from molecular phylogenies, pp. 66-80 in New Uses for New Phylogenies, edited by P. H. HARVEY, A. J. LEIGH BROWN, J. MAYNARD SMITH and S. NEE. Oxford University Press, Oxford.
    • (1996) New Uses for New Phylogenies , pp. 66-80
    • Nee, S.1    Holmes, E.C.2    Rambaut, A.3    Harvey, P.H.4
  • 22
    • 14344259235 scopus 로고    scopus 로고
    • Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo
    • OPGEN-RHEIN, R., L. FAHRMEIR and K. STRIMMER, 2005 Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo. BMC Evol. Biol. 5: 6.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 6
    • Opgen-Rhein, R.1    Fahrmeir, L.2    Strimmer, K.3
  • 23
    • 12144254038 scopus 로고    scopus 로고
    • Transmission of HIV-1 during primary infection: Relationship to sexual risk and sexually transmitted infections
    • PAO, D., M. FISHER, S. HUÉ, G. DEAN, G. MURPHY et al., 2005 Transmission of HIV-1 during primary infection: relationship to sexual risk and sexually transmitted infections. AIDS 19: 85.
    • (2005) AIDS , vol.19 , pp. 85
    • Pao, D.1    Fisher, M.2    Hué, S.3    Dean, G.4    Murphy, G.5
  • 24
    • 0033911330 scopus 로고    scopus 로고
    • An integrated framework for the inference of viral population history from reconstructed genealogies
    • PYBUS, O. G., A. RAMBAUT and P. H. HARVEY, 2000 An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155: 1429-1437.
    • (2000) Genetics , vol.155 , pp. 1429-1437
    • Pybus, O.G.1    Rambaut, A.2    Harvey, P.H.3
  • 26
    • 0038026990 scopus 로고    scopus 로고
    • US human immunodeficiency virus type 1 epidemic: Date of origin, population history, and characterization of early strains
    • ROBBINS, K. E., P. LEMEY, O. G. PYBUS, H. W. JAFFE, A. S. YOUNGPAIROJ et al., 2003 US human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains. J. Virol. 77: 6359-6366.
    • (2003) J. Virol. , vol.77 , pp. 6359-6366
    • Robbins, K.E.1    Lemey, P.2    Pybus, O.G.3    Jaffe, H.W.4    Youngpairoj, A.S.5
  • 27
    • 0036245438 scopus 로고    scopus 로고
    • Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
    • ROSENBERG, N. A., and M. NORDBORG, 2002 Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nat. Rev. Genet. 3: 380-390.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 380-390
    • Rosenberg, N.A.1    Nordborg, M.2
  • 28
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems in the analysis of DNA sequences
    • American Mathematical Society, Providence, RI
    • TAVARE, S., 1986 Some probabilistic and statistical problems in the analysis of DNA sequences, pp. 57-86 in Lectures on Mathematics in the Life Sciences. American Mathematical Society, Providence, RI.
    • (1986) Lectures on Mathematics in the Life Sciences , pp. 57-86
    • Tavare, S.1
  • 30
    • 0035941390 scopus 로고    scopus 로고
    • Acute HIV infection: Impact on the spread of HIV and transmission of drug resistance
    • YERLY, S., S. VORA, P. RIZZARDI, J. P. CHAVE, P. L. VERNAZZA et al., 2001 Acute HIV infection: impact on the spread of HIV and transmission of drug resistance. AIDS 15: 2287.
    • (2001) AIDS , vol.15 , pp. 2287
    • Yerly, S.1    Vora, S.2    Rizzardi, P.3    Chave, J.P.4    Vernazza, P.L.5
  • 31
    • 0035967994 scopus 로고    scopus 로고
    • Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution
    • YUSIM, K., M. PEETERS, O. G. PYBUS, T. BHATTACHARYA and B. KORBER, 2001 Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution. Philos. Trans. R. Soc. B Biol. Sci. 356: 855-866.
    • (2001) Philos. Trans. R. Soc. B Biol. Sci. , vol.356 , pp. 855-866
    • Yusim, K.1    Peeters, M.2    Pybus, O.G.3    Bhattacharya, T.4    Korber, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.