Interpreting the genetic basis of silique traits in Brassica napus using a joint QTL network

Plant Breeding

Volumn 133, Issue 1, 2014, Pages 52-60

  Qi, Liping ^a   Mao, Long ^a   Sun, Chengming ^a   Pu, Yuanyuan ^a   Fu, Tingdong ^a   Ma, Chaozhi ^a   Shen, Jinxiong ^a   Tu, Jinxing ^a   Yi, Bin ^a   Wen, Jing ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Brassica napus; Number of seeds per silique; QTL network; Quantitative trait locus; Silique length; Thousand seed weight

Indexed keywords

BRASSICA NAPUS;

EID: 84892485315     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/pbr.12131     Document Type: Article

References (45)

1. Basunanda, P., M. Radoev, W. Ecke, W. Friedt, H. Becker, and R. Snowdon, 2010: Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napus L.). Theor. Appl. Genet. 120, 271-281.
2. Batley, J., C. J. Hopkins, N. O. I. Cogan, M. Hand, E. Jewell, J. Kaur, S. Kaur, X. Li, A. E. Ling, and C. Love, 2007: Identification and characterization of simple sequence repeat markers from Brassica napus expressed sequences. Mol. Ecol. Notes 7, 886-889.
3. Bennett, E. J., J. A. Roberts, and C. Wagstaff, 2011: The role of the pod in seed development: strategies for manipulating yield. New Phytol. 190, 838-853.
4. Chay, P., and N. Thurling, 1989: Identification of genes controlling pod length in spring rapeseed. Brassica napus L., and their utilization for yield improvement. Plant Breed. 103, 54-62.
5. Chen, W., Y. Zhang, X. Liu, B. Chen, J. Tu, and T. D. Fu, 2007: Detection of QTL for six yield-related traits in oilseed rape (Brassica napus) using DH and immortalized F 2 populations. Theor. Appl. Genet. 115, 849-858.
6. Cheng, X., J. Xu, S. Xia, J. Gu, Y. Yang, J. Fu, X. Qian, S. Zhang, J. Wu, and K. Liu, 2009: Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napus. Theor. Appl. Genet. 118, 1121-1131.
7. Choi, S. R., G. R. Teakle, P. Plaha, J. H. Kim, C. J. Allender, E. Beynon, Z. Y. Piao, P. Soengas, T. H. Han, and G. J. King, 2007: The reference genetic linkage map for the multinational Brassica rapa genome sequencing project. Theor. Appl. Genet. 115, 777-792.
8. Clarke, J., and G. Simpson, 1978: Influence of irrigation and seeding rates on yield and yield components of Brassica napus cv. Tower. Can. J. Plant Sci. 58, 731-737.
9. Diepenbrock, W., 2000: Yield analysis of winter oilseed rape (Brassica napus L.): a review. Field Crops Res. 67, 35-49.
10. Ding, G., Z. Zhao, Y. Liao, Y. Hu, L. Shi, Y. Long, and F. Xu, 2012: Quantitative trait loci for seed yield and yield-related traits, and their responses to reduced phosphorus supply in Brassica napus. Ann. Bot. 109, 747-759.
11. Fan, C., G. Cai, J. Qin, Q. Li, M. Yang, J. Wu, T. Fu, K. Liu, and Y. Zhou, 2010: Mapping of quantitative trait loci and development of allele-specific markers for seed weight in Brassica napus. Theor. Appl. Genet. 121, 1289-1301.
12. Hawkins, G. P., X. Zhang, M. R. Thiagarjah, L. M. Corrigan, and G. R. Stringam, 2005: Identification of RAPD markers linked to pod length in Brassica napus L. canola. Can. J. Plant Sci. 85, 803-808.
13. Hinze, L. L., and K. R. Lamkey, 2003: Absence of epistasis for grain yield in elite maize hybrids. Crop Sci. 43, 46-56.
14. Iniguez-Luy, F. L., L. Lukens, M. W. Farnham, R. M. Amasino, and T. C. Osborn, 2009: Development of public immortal mapping populations, molecular markers and linkage maps for rapid cycling Brassica rapa and B. oleracea. Theor. Appl. Genet. 120, 31-43.
15. Kim, H. R., S. Choi, J. Bae, C. Hong, S. Lee, M. Hossain, D. Van Nguyen, M. Jin, B. S. Park, and J. W. Bang, 2009: Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa. BMC Genomics 10, 432-442.
16. Korir, P. C., J. Zhang, K. J. Wu, T. J. Zhao, and J. Y. Gai, 2013: Association mapping combined with linkage analysis for aluminium tolerance among soybean cultivars released in Yellow and Changjiang River Valleys in China. Theor. Appl. Genet. 126, 1659-1675.
17. Kosambi, D., 1943: The estimation of map distances from recombination values. Ann. Hum. Genet. 12, 172-175.
18. Kresovich, S., A. Szewc-McFadden, S. Bliek, and J. McFerson, 1995: Abundance and characterization of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed). Theor. Appl. Genet. 91, 206-211.
19. Li, Y., J. Shen, T. Wang, T. Fu, and C. Ma, 2007: Construction of a linkage map using SRAP, SSR and AFLP markers in Brassica napus L. Sci. Agric. Sin. 40, 1118-1126.
20. Li, H. W., T. J. Zhao, Y. F. Wang, D. Y. Yu, S. Y. Chen, R. B. Zhou, and J. Y. Gai, 2011a: Genetic structure composed of additive QTL, epistatic QTL pairs and collective unmapped minor QTL conferring oil content and fatty acid components of soybeans. Euphytica 182, 117-132.
21. Li, H., X. Chen, Y. Yang, J. Xu, J. Gu, J. Fu, X. Qian, S. Zhang, J. Wu, and K. Liu, 2011b: Development and genetic mapping of microsatellite markers from whole genome shotgun sequences in Brassica oleracea. Mol. Breed. 28, 585-596.
22. Lowe, A. J., C. Moule, M. Trick, and K. Edwards, 2004: Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor. Appl. Genet. 108, 1103-1112.
23. Lu, G. Y., G. S. Yang, and T. D. Fu, 2004: Molecular mapping of a dominant genic male sterility gene Ms in rapeseed (Brassica napus). Plant Breed. 123, 262-265.
24. Özer, H., E. Oral, and Ü. Dogru, 1999: Relationships between yield and yield components on currently improved spring rapeseed cultivars. Turk. J. Agric. For. 23, 603-608.
25. Panjabi, P., A. Jagannath, N. C. Bisht, K. L. Padmaja, S. Sharma, V. Gupta, A. K. Pradhan, and D. Pental, 2008: Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. BMC Genomics 9, 113-132.
26. Piquemal, J., E. Cinquin, F. Couton, C. Rondeau, E. Seignoret, I. Doucet, D. Perret, M. J. Villeger, P. Vincourt, and P. Blanchard, 2005: Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theor. Appl. Genet. 111, 1514-1523.
27. Qiu, D., C. Morgan, J. Shi, Y. Long, J. Liu, R. Li, X. Zhuang, Y. Wang, X. Tan, and E. Dietrich, 2006: A comparative linkage map of oilseed rape and its use for QTL analysis of seed oil and erucic acid content. Theor. Appl. Genet. 114, 67-80.
28. Radoev, M., H. C. Becker, and W. Ecke, 2008: Genetic analysis of heterosis for yield and yield components in rapeseed (Brassica napus L.) by quantitative trait locus mapping. Genetics 179, 1547-1558.
29. SAS Institute, 2000: SAS/STAT user's guide, version 8. SAS Institute, SAS Institute.
30. Shi, J., R. Li, D. Qiu, C. Jiang, Y. Long, C. Morgan, I. Bancroft, J. Zhao, and J. Meng, 2009: Unraveling the complex trait of crop yield with quantitative trait loci mapping in Brassica napus. Genetics 182, 851-861.
31. Smith, L. B., and G. J. King, 2000: The distribution of BoCAL-a alleles in Brassica oleracea is consistent with a genetic model for curd development and domestication of the cauliflower. Mol. Breed. 6, 603-613.
32. SPSS I, 2008: SPSS 16.0 for Windows. SPSS Inc, Chicago, IL.
33. Suwabe, K., H. Tsukazaki, H. Iketani, K. Hatakeyama, M. Kondo, M. Fujimura, T. Nunome, H. Fukuoka, M. Hirai, and S. Matsumoto, 2006: Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the genetic origin of clubroot resistance. Genetics 173, 309-319.
34. Udall, J. A., P. A. Quijada, B. Lambert, and T. C. Osborn, 2006: Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 2. Identification of alleles from unadapted germplasm. Theor. Appl. Genet. 113, 597-609.
35. Uzunova, M., and W. Ecke, 1999: Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.). Plant Breed. 118, 323-326.
36. Van Ooijen, J., and R. Voorrips, 2001: JoinMap: Version 3.0: Software for the Calculation of Genetic Linkage Maps. University and Research Center. Plant Research International, Wageningen.
37. Vos, P., R. Hogers, and M. Bleeker, 1995: AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414.
38. Xing, Y. Z., C. G. Xu, J. P. Hua, and Y. F. Tan, 2001: Analysis of QTL 9 environment interaction for rice panicle characteristics. Acta genetica Sin. 28, 439-446.
39. Xu, S. Z., and Z. Y. Jia, 2007: Genomewide analysis of epistatic effects for quantitative traits in barley. Genetics 175, 1955-1963.
40. Xu, J., X. Qian, X. Wang, R. Li, X. Cheng, Y. Yang, J. Fu, S. Zhang, G. J. King, and J. Wu, 2010: Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa. BMC Genomics 11, 594-608.
41. Yang, J., C. Hu, H. Hu, R. Yu, Z. Xia, X. Ye, and J. Zhu, 2008: QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics 24, 721-723.
42. Yang, P., C. Shu, L. Chen, J. Xu, J. Wu, and K. Liu, 2012: Identification of a major QTL for silique length and seed weight in oilseed rape (Brassica napus L.). Theor. Appl. Genet. 125, 285-296.
43. Zhang, L., G. Yang, P. Liu, D. Hong, S. Li, and Q. He, 2011: Genetic and correlation analysis of silique-traits in Brassica napus L. by quantitative trait locus mapping. Theor. Appl. Genet. 122, 21-31.
44. Zhang, L., S. Li, L. Chen, and G. Yang, 2012: Identification and mapping of a major dominant quantitative trait locus controlling seeds per silique as a single Mendelian factor in Brassica napus L. Theor. Appl. Genet. 125, 695-705.
45. Zheng, W., J. Yang, and J. Zhu, 2010: QTLNetworkR: an interactive R package for QTL visualization. J. Zhejiang Univ. Sci. B 11, 512-515.