Genetic structure composed of additive QTL, epistatic QTL pairs and collective unmapped minor QTL conferring oil content and fatty acid components of soybeans

Euphytica

Volumn 182, Issue 1, 2011, Pages 117-132

  Li, Haiwang ^a,b,c   Zhao, Tuanjie ^a,b,c   Wang, Yufeng ^a,b,c   Yu, Deyue ^a,b,c   Chen, Shouyi ^d   Zhou, Ruibao ^e   Gai, Junyi ^a,b,c  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b National Center for Soybean Improvement   (China)

^c State Key Laboratory of Crop Genetics and Germplasm Enhancement   (China)

^d INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^e HENAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Additive QTL; Collective unmapped minor QTL; Epistatic QTL pair; Oil and fatty acids; Soybean Glycine max (L.) Merr.

Indexed keywords

GLYCINE MAX;

EID: 80255137603     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-011-0524-9     Document Type: Article

References (51)

1. Buckler ES, Holland JB, Bradbury PJ et al (2009) The genetic architecture of maize flowering time. Science 325: 714-718.
2. Cahoon EB (2003) Genetic enhancement of soybean oil for industrial uses: prospects and challenges. AgBioForum 6: 11-13.
3. Chantret N, Mingeot D, Sourdille P, Bernard M, Jacquemin JM, Doussinault G (2001) A major QTL for powdery mildew resistance is stable over time and at two development stages in winter wheat. Theor Appl Genet 103: 962-971.
4. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
5. Diers BW, Shoemaker RC (1992) Restriction fragment length polymorphism analysis of soybean fatty acid content. J Am Oil Chem Soc 69: 1242-1244.
6. Diers BW, Keim P, Fehr WR, Shoemaker RC (1992) RFLP analysis of soybean seed protein and oil content. Theor Appl Genet 83: 608-612.
7. Doebley J, Stec A, Gustus C (1995) Teosinte branched1 and the origin of maize: evidence for epistasis and the evolution of dominance. Genetics 141: 333-346.
8. Emken EA (1994) Metabolism of dietary stearic acid relative to other fatty acids in human subjects. Am J Clin Nutr 60: 1023-1028.
9. Fatemi SH, Hammond EG (1980) Analysis of oleate, linoleate and linolenate hydroperoxides in oxidized ester mixtures. Lipids 15: 379-385.
10. Fehr WR (2007) Breeding for modified fatty acid composition in soybean. Crop Sci 47: S72-S87.
11. Gai JY (2006) Segregation analysis on genetic system of quantitative traits in plants. Front. Biol. China 1: 85-92.
12. Gai JY, Zhang YM, Wang JK (2003) Genetic system of quantitative traits in plants. Science Press, Beijing (in Chinese).
13. Gutierrez-Gonzalez JJ, Wu X, Zhang J, Lee J-D, Ellersieck M, Shannon JG, Yu O, Nguyen HT, Sleper DA (2009) Genetic control of soybean seed isoflavone content: importance of statistical model and epistasis in complex traits. Theor Appl Genet 119: 1069-1083.
14. He CY, Zhang ZY, Wang YJ, Zheng XW, Yu DY, Chen SY, Gai JY (2001) Microsatellite marker analysis of a soybean recombinant inbred line NJRIKY. Acta Genetica Sinica 28: 171-181 (in Chinese).
15. Hisano H, Sato S, Isobe S, Sasamoto S, Wada T, Matsuno A, Fujishiro T, Yamada M, Nakayama S, Nakamura Y, Watanabe S, Harada Y, Tabata S (2007) Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res 14: 271-281.
16. Hu FB, Manson JE, Willett WC (2001) Types of dietary fat and risk of coronary heart disease: a critical review. J Am Coll Nutr 20: 5-19.
17. Hyten DL, Pantalone VR, Saxton AM, Schmidt ME, Sams CE (2004) Molecular mapping and identification of soybean fatty acid modifier quantitative trait loci. J Am Oil Chem Soc 81: 1115-1118.
18. Jansen RC (1993) Interval mapping of multiple quantitative trait loci. Genetics 135: 205-211.
19. Kao CH, Zeng ZB, Teasdale RD (1999) Multiple interval mapping for quantitative trait loci. Genetics 152: 1203-1216.
20. Lander ES, Botstein D (1989) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
21. Lee JD, Bilyeu KD, Shannon JG (2007) Genetics and breeding for modified fatty acid profile in soybean seed oil. J Crop Sci Biotechnol 10: 201-210.
22. Li ZL, Wilson RF, Rayford WE, Boerma HR (2002) Molecular mapping genes conditioning reduced palmitic acid content in N87-2122-4 soybean. Crop Sci 42: 373-378.
23. Li HH, Ye GY, Wang JK (2007) A modified algorithm for the improvement of composite interval mapping. Genetics 175: 361-374.
24. Lu WG, Gai JY, Zheng YZ, Li WD (2006) Construction of a soybean genetic linkage map and mapping QTLs resistant to soybean cyst nematode (Heterodera glycines Ichinohe). Acta Agronomica Sinica 32: 1272-1279 (in Chinese).
25. Malmberg RL, Held S, Waits A, Mauricio R (2005) Epistasis for fitness-related quantitative traits in Arabidopsis thaliana grown in the field and in the greenhouse. Genetics 171: 2013-2027.
26. Monteros MJ, Burton JW, Boerma HR (2008) Molecular mapping and confirmation of QTLs associated with oleic acid content in N00-3350 soybean. Crop Sci 48: 2223-2234.
27. Nyquist WE (1991) Estimation of heritability and prediction of selection response in plant populations. CRC Crit Rev Plant Sci 10: 235-322.
28. Panthee DR, Pantalone VR, Saxton AM (2006) Modifier QTL for fatty acid composition in soybean oil. Euphytica 152: 67-73.
29. Phillips PC (2008) Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems. Nat Rev Genet 9: 855-867.
30. SAS Institute Inc. (2002) SAS/STAT V9. 1. SAS Institute Inc. Cary, NC.
31. Shan DP, Qi ZM, Qiu HM, Shan CY, Liu CY, Hu GH, Chen QS (2008) Epistatic effects of QTLs and QE interaction effects on oil content in soybean. Acta Agronomica Sinica 34: 952-957 (in Chinese).
32. Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109: 122-128.
33. Spencer MM, Pantalone VR, Meyer EJ, Landau-Ellis D, Hyten DL Jr (2003) Mapping the Fas locus controlling stearic acid content in soybean. Theor Appl Genet 106: 615-619.
34. Su CF, Zhao TJ, Gai JY (2010) Simulation comparisons of effectiveness among QTL mapping procedures of different statistical genetic models. Acta Agronomica Sinica 36: 1100-1107 (in Chinese).
35. Symonds VV, Godoy AV, Alconada T, Botto JF, Juenger TE, Casal JJ, Lloyd AM (2005) Mapping quantitative trait loci in multiple populations of Arabidopsis thaliana identifies natural allelic variation for trichome density. Genetics 169: 1649-1658.
36. Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27: 205-233.
37. Tucker DM, Griffey CA, Liu S, Brown-Guedira G, Marshall DS, Saghai Maroof MA (2007) Confirmation of three quantitative trait loci conferring adult plant resistance to powdery mildew in two winter wheat populations. Euphytica 155: 1-13.
38. Venuprasad R, Dalid CO, Del Valle M, Zhao D, Espiritu M, Sta Cruz MT, Amante M, Kumar A, Atlin GN (2009) Identification and characterization of large-effect quantitative trait loci for grain yield under lowland drought stress in rice using bulk-segregant analysis. Theor Appl Genet 120: 177-190.
39. Wang YF (2009) Genomic characterization of simple sequence repeats and establishment, integration and application of high density genetic linkage map in soybean. PhD Dissertation, Nanjing Agricultural University (in Chinese).
40. Wang YJ, Wu XL, He CY, Zhang JS, Chen SY, Gai JY (2003) A soybean genetic linkage map constructed after the mapping population being tested and adjusted. Scientia Agricultura Sinica 36: 1254-1260 (in Chinese).
41. Wang H, Zhang YM, Li XM, Masinde GL, Mohan S, Baylink DJ, Xu SZ (2005) Bayesian shrinkage estimation of quantitative trait loci parameters. Genetics 170: 465-480.
42. Wang SC, Basten CJ, Zeng ZB (2006) Windows QTL Cartographer 2. 5. North Carolina State University, Raleigh.
43. Wilson RF (2004) Seed composition. In: Boerma HR, Specht JE (eds) Soybeans: improvement, production and uses, 3rd edn. ASA-CSSA-SSSA, Madison, pp 621-677.
44. Xing GN, Zhou B, Zhao TJ, Yue DY, Xing H, Chen SY, Gai JY (2008) Mapping QTLs of resistance to Megacota cribraria (Fabricius) in soybean. Acta Agronomica Sinica 34: 361-368 (in Chinese).
45. Xu SZ, Jia ZY (2007) Genomewide analysis of epistatic effects for quantitative traits in barley. Genetics 175: 1955-1963.
46. Yang J, Zhu J, Williams RW (2007) Mapping the genetic architecture of complex traits in experimental populations. Bioinformatics 23: 1527-1536.
47. Yang XH, Guo YQ, Yan JB, Zhang J, Song TM, Rocheford T, Li JS (2010) Major and minor QTL and epistasis contribute to fatty acid compositions and oil concentration in high-oil maize. Theor Appl Genet 120: 665-678.
48. Yi N, Xu S (2002) Mapping quantitative trait loci with epistatic effects. Genet Res 79: 185-198.
49. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
50. Zhang WK, Wang YJ, Luo GZ, Zhang JS, Wu XL He CY, Gai JY, Chen SY (2004) QTL mapping of ten agronomic traits on the soybean [Glycine max (L). Merr.] genetic map and their association with EST markers. Theor Appl Genet 108: 1131-1139.
51. Zheng YZ, Gai JY, Lu WG, Li WD, Zhou RB, Tian SJ (2006) QTL Mapping for fat and fatty acid composition contents in soybean. Acta Agronomica Sinica 32: 1823-1830 (in Chinese).