Identification of a major QTL for silique length and seed weight in oilseed rape (Brassica napus L.)

Theoretical and Applied Genetics

Volumn 125, Issue 2, 2012, Pages 285-296

  Yang, Pu ^a   Shu, Chang ^a   Chen, Lin ^a   Xu, Jinsong ^a   Wu, Jiangsheng ^a   Liu, Kede ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BRASSICA NAPUS; CHROMOSOMAL REGIONS; GENETIC BASIS; GROWING SEASON; HIGH YIELD; INBRED LINE; MARKER-ASSISTED SELECTION; OIL SEED RAPE; PLEIOTROPIC EFFECTS; QTL ANALYSIS; QUANTITATIVE TRAIT LOCUS; RECOMBINANT INBRED LINES; SEED SIZE; SEED WEIGHT;

OILSEEDS;

PLANTS (BOTANY);

ANALYSIS OF VARIANCE; ARTICLE; CHROMOSOME MAP; GENETIC EPISTASIS; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; HETEROZYGOTE; HISTOLOGY; INBREEDING; MUTATION; ORGAN SIZE; PHENOTYPE; PLANT CHROMOSOME; PLANT SEED; QUANTITATIVE TRAIT; QUANTITATIVE TRAIT LOCUS; RAPESEED; REPRODUCIBILITY;

ANALYSIS OF VARIANCE; BRASSICA NAPUS; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; EPISTASIS, GENETIC; GENETIC MARKERS; HETEROZYGOTE; INBREEDING; MUTATION; ORGAN SIZE; PHENOTYPE; POLYMORPHISM, GENETIC; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE; REPRODUCIBILITY OF RESULTS; SEEDS;

BRASSICA NAPUS;

EID: 84863558307     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-012-1833-7     Document Type: Article

References (55)

1. Allen E, Morgan D, Ridgman W (1971) A physiological analysis of the growth of oilseed rape. J Agric Sci 77: 339-341.
2. Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J (2004) BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20: 2324-2326.
3. Aytac Z, Kinaci G (2009) Genetic variability and association studies of some quantitative characters in winter rapeseed (Brassica napus L.). Afr J Biotechnol 8: 3547-3554.
4. Basunanda P, Radoev M, Ecke W, Friedt W, Becker H, Snowdon R (2010) Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napus L.). Theor Appl Genet 120: 271-281.
5. Bennett EJ, Roberts JA, Wagstaff C (2011) The role of the pod in seed development: strategies for manipulating yield. New Phytol 190: 838-853.
6. Bernardo R (2008) Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci 48: 1649-1664.
7. Brar G, Thies W (1977) Contribution of leaves, stem, siliques and seeds to dry matter accumulation in ripening seeds of rapeseed, Brassica napus L. Z Pflanzenphysiol 82: 1-13.
8. Butruille DV, Guries RP, Osborn TC (1999) Linkage analysis of molecular markers and quantitative trait loci in populations of inbred backcross lines of Brassica napus L. Genetics 153: 949-964.
9. Chay P, Thurling N (1989) Identification of genes controlling pod length in spring rapeseed, Brassica napus L., and their utilization for yield improvement. Plant Breed 103: 54-62.
10. Chen B, Heneen W, J nsson R (1988) Resynthesis of Brassies napus L. through interspecific hybridization between B. alboglabra Bailey and B. campestris L. with special emphasis on seed colour. Plant Breed 101: 52-59.
11. 2 populations. Theor Appl Genet 115: 849-858.
12. Cheng X, Xu J, Xia S, Gu J, Yang Y, Fu J, Qian X, Zhang S, Wu J, Liu K (2009) Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napus. Theor Appl Genet 118: 1121-1131.
13. Choi SR, Teakle GR, Plaha P, Kim JH, Allender CJ, Beynon E, Piao ZY, Soengas P, Han TH, King GJ, Barker GC, Hand P, Lydiate DJ, Batley J, Edwards D, Koo DH, Bang JW, Park BS, Lim YP (2007) The reference genetic linkage map for the multinational Brassica rapa genome sequencing project. Theor Appl Genet 115: 777-792.
14. Clarke J, Simpson G (1978) Influence of irrigation and seeding rates on yield and yield components of Brassica napus cv. Tower. Can J Plant Sci 58: 731-737.
15. Diepenbrock W (2000) Yield analysis of winter oilseed rape (Brassica napus L.): a review. Field Crops Res 67: 35-49.
16. Fan C, Cai G, Qin J, Li Q, Yang M, Wu J, Fu T, Liu K, Zhou Y (2010) Mapping of quantitative trait loci and development of allele-specific markers for seed weight in Brassica napus. Theor Appl Genet 121: 1289-1301.
17. Goffinet B, Gerber S (2000) Quantitative trait loci: a meta-analysis. Genetics 155: 463-473.
18. Hasan M, Friedt W, Pons-Kuhnemann J, Freitag NM, Link K, Snowdon RJ (2008) Association of gene-linked SSR markers to seed glucosinolate content in oilseed rape (Brassica napus ssp. napus). Theor Appl Genet 116: 1035-1049.
19. Kashiani P, Saleh G (2010) Estimation of genetic correlations on sweet corn inbred lines using SAS mixed model. Am J Agr Biol Sci 5: 309-314.
20. Kosambi D (1944) The estimation of map distances from recombination values. Ann Eugenic 12: 172-175.
21. Kresovich S, Szewc-McFadden A, Bliek S, McFerson J (1995) Abundance and characterization of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed). Theor Appl Genet 91: 206-211.
22. Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21: 1111.
23. Latta RG, Gardner KM (2007) Shared quantitative trait loci underlying the genetic correlation between continuous traits. Mol Ecol 16: 4195-4209.
24. Lebowitz R (1989) Image analysis measurements and repeatability estimates of siliqua morphological traits in Brassica campestris L. Euphytica 43: 113-116.
25. Li H, Chen X, Yang Y, Xu J, Gu J, Fu J, Qian X, Zhang S, Wu J, Liu K (2011) Development and genetic mapping of microsatellite markers from whole genome shotgun sequences in Brassica oleracea. Mol Breed 28: 585-596.
26. Lowe AJ, Jones AE, Raybould AF, Trick M, Moule CL, Edwards KJ (2002) Transferability and genome specificity of a new set of microsatellite primers among Brassica species of the U triangle. Mol Ecol Notes 2: 7-11.
27. Lowe AJ, Moule C, Trick M, Edwards KJ (2004) Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor Appl Genet 108: 1103-1112.
28. Miura K, Ashikari M, Matsuoka M (2011) The role of QTLs in the breeding of high-yielding rice. Trends Plant Sci 16: 319-326.
29. Özer H, Oral E, Dogru Ü (1999) Relationships between yield and yield components on currently improved spring rapeseed cultivars. Turk J Agric For 23: 603-608.
30. Parkin IAP, Gulden SM, Sharpe AG, Lukens L, Trick M, Osborn TC, Lydiate DJ (2005) Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 171: 765-781.
31. Piquemal J, Cinquin E, Couton F, Rondeau C, Seignoret E, Doucet I, Perret D, Villeger MJ, Vincourt P, Blanchard P (2005) Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theor Appl Genet 111: 1514-1523.
32. Quijada PA, Udall JA, Lambert B, Osborn TC (2006) Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 1. Identification of genomic regions from winter germplasm. Theor Appl Genet 113: 549-561.
33. Radoev M, Becker HC, Ecke W (2008) Genetic analysis of heterosis for yield and yield components in rapeseed (Brassica napus L.) by quantitative trait locus mapping. Genetics 179: 1547-1558.
34. Samizadeh H, Yazdi-Samadi B, Ghannadha MR, Malbobi MA, Taleei AR, Stringam GR (2007) Study of pod length trait in doubled haploid brassica napus population by molecular markers. J Agric Sci Technol 9: 129-136.
35. SAS Institute (2000) SAS/STAT user's guide, version 8. SAS Institute, Cary.
36. 15N in vivo labeling throughout seed filling. Plant Physiol 137: 1463-1473.
37. Shi S, Wu J, Liu H (1995) Dwarf stem and long pod mutants induced from microspore embryo cultures of Brassica napus with EMS. Acta Agr Nucl Sin 9: 252-253.
38. Shi J, Li R, Qiu D, Jiang C, Long Y, Morgan C, Bancroft I, Zhao J, Meng J (2009) Unraveling the complex trait of crop yield with quantitative trait loci mapping in Brassica napus. Genetics 182: 851-861.
39. Singh J, Yadav M, Sheikh I (1996) Genetical studies for yield and oil content in Brassica juncea (L.) Czern and Coss. Indian J Genet 56: 299-304.
40. Snowdon R, Lühs W, Friedt W (2007) Oilseed rape. Springer, Berlin, pp 55-114.
41. Suwabe K, Tsukazaki H, Iketani H, Hatakeyama K, Kondo M, Fujimura M, Nunome T, Fukuoka H, Hirai M, Matsumoto S (2006) Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the genetic origin of clubroot resistance. Genetics 173: 309-319.
42. Suwabe K, Morgan C, Bancroft I (2008) Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa. Genome 51: 169-176.
43. Szewc-McFadden A, Kresovich S, Bliek S, Mitchell S, McFerson J (1996) Identification of polymorphic, conserved simple sequence repeats (SSRs) in cultivated Brassica species. Theor Appl Genet 93: 534-538.
44. Takeda S, Matsuoka M (2008) Genetic approaches to crop improvement: responding to environmental and population changes. Nat Rev Genet 9: 444-457.
45. Udall JA, Quijada PA, Lambert B, Osborn TC (2006) Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 2. Identification of alleles from unadapted germplasm. Theor Appl Genet 113: 597-609.
46. Uzunova M, Ecke W (1999) Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.). Plant Breed 118: 323-326.
47. van Ooijen J, Voorrips R (2001) JoinMap(R) 3. 0. Software for the calculation of genetic linkage maps. Plant Research International, Wageningen.
48. Wang F, Wang X, Chen X, Xiao Y, Li H, Zhang S, Xu J, Fu J, Huang L, Liu C, Wu J, Liu K (2011) Abundance, marker development and genetic mapping of microsatellites from unigenes in Brassica napus. Mol Breed. doi: 10. 1007/s11032-011-9658-7.
49. Xing Y, Zhang Q (2010) Genetic and molecular bases of rice yield. Annu Rev Plant Biol 61: 421-442.
50. Xu J, Qian X, Wang X, Li R, Cheng X, Yang Y, Fu J, Zhang S, King GJ, Wu J, Liu K (2010) Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa. BMC Genomics 11: 594.
51. Yamanaka N, Watanabe S, Toda K, Hayashi M, Fuchigami H, Takahashi R, Harada K (2005) Fine mapping of the FT1 locus for soybean flowering time using a residual heterozygous line derived from a recombinant inbred line. Theor Appl Genet 110: 634-639.
52. Yang J, Hu C, Hu H, Yu R, Xia Z, Ye X, Zhu J (2008) QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics 24: 721-723.
53. Yin Y, Wang H, Liao X (2009) Analysis and strategy for 2009 rapeseed industry development in China. Chin J Oil Crop Sci 31: 259-262.
54. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
55. Zhang L, Yang G, Liu P, Hong D, Li S, He Q (2011) Genetic and correlation analysis of silique-traits in Brassica napus L. by quantitative trait locus mapping. Theor Appl Genet 122: 21-31.