메뉴 건너뛰기




Volumn 118, Issue 6, 2009, Pages 1121-1131

Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napus

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ARTIFICIAL CHROMOSOMES; BRASSICA; BRASSICA NAPUS; DOUBLED HAPLOIDS; GENETIC DIVERSITIES; GENETIC MAPPINGS; GENETIC MAPS; GENOME SEQUENCING; LINKAGE GROUPS; LINKAGE MAPS; MICRO SATELLITES; MICROSATELLITE MARKERS; SIMPLE SEQUENCE-REPEAT MARKERS; SSR MARKERS; TAGGING GENES;

EID: 64249147828     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-0967-8     Document Type: Article
Times cited : (152)

References (59)
  • 3
    • 40549128392 scopus 로고    scopus 로고
    • Automated discovery of single nucleotide polymorphism and simple sequence repeat molecular genetic markers
    • J Batley E Jewell D Edwards 2007 Automated discovery of single nucleotide polymorphism and simple sequence repeat molecular genetic markers Methods Mol Biol 406 473 494
    • (2007) Methods Mol Biol , vol.406 , pp. 473-494
    • Batley, J.1    Jewell, E.2    Edwards, D.3
  • 4
    • 84989026636 scopus 로고
    • Resynthesis of Brassies napus L. through interspecific hybridization between B. alboglabra Bailey and B. campestris L. with special emphasis on seed colour
    • BY Chen WK Heneen R Jönsson 1988 Resynthesis of Brassies napus L. through interspecific hybridization between B. alboglabra Bailey and B. campestris L. with special emphasis on seed colour Plant Breed 101 52 59
    • (1988) Plant Breed , vol.101 , pp. 52-59
    • Chen, B.Y.1    Heneen, W.K.2    R. Jönsson3
  • 9
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • PK Gupta RK Varshney 2000 The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat Euphytica 113 163 185
    • (2000) Euphytica , vol.113 , pp. 163-185
    • Gupta, P.K.1    Varshney, R.K.2
  • 12
    • 38749111086 scopus 로고    scopus 로고
    • Hong CP, Kwon SJ, Yang TJ, Park BS, Lim YP (2008) Progress in understanding and sequencing the genome of Brassica rapa. Int J Plant Genomics. doi: 10.1155/2008/582837
  • 14
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: a DNA sequence assembly program
    • X Huang A Madan 1999 CAP3: a DNA sequence assembly program Genome Res 9 868 877
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 15
    • 51849085108 scopus 로고    scopus 로고
    • Development of a set of public SSR markers derived from genomic sequence of a rapid cycling Brassica oleracea L. genotype
    • F Iniguez-Luy A Voort T Osborn 2008 Development of a set of public SSR markers derived from genomic sequence of a rapid cycling Brassica oleracea L. genotype Theor Appl Genet 117 977 985
    • (2008) Theor Appl Genet , vol.117 , pp. 977-985
    • Iniguez-Luy, F.1    Voort, A.2    Osborn, T.3
  • 17
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • MV Katti PK Ranjekar VS Gupta 2001 Differential distribution of simple sequence repeats in eukaryotic genome sequences Mol Biol Evol 18 1161 1167
    • (2001) Mol Biol Evol , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 18
    • 0000732266 scopus 로고
    • The estimation of map distance from recombination values
    • DD Kosambi 1944 The estimation of map distance from recombination values Ann Eugen 12 172 175
    • (1944) Ann Eugen , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 19
    • 0003377778 scopus 로고
    • Abundance and characterisation of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed)
    • S Kresovich AK Szewc-McFadden SM Bliek JR McFerson 1995 Abundance and characterisation of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed) Theor Appl Genet 91 206 211
    • (1995) Theor Appl Genet , vol.91 , pp. 206-211
    • Kresovich, S.1    Szewc-McFadden, A.K.2    Bliek, S.M.3    McFerson, J.R.4
  • 20
    • 0031771373 scopus 로고    scopus 로고
    • Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
    • U Lagercrantz 1998 Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements Genetics 150 1217 1228
    • (1998) Genetics , vol.150 , pp. 1217-1228
    • Lagercrantz, U.1
  • 21
    • 0027285192 scopus 로고
    • The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates
    • U Lagercrantz H Ellegren L Andersson 1993 The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates Nucleic Acids Res 21 1111 1115
    • (1993) Nucleic Acids Res , vol.21 , pp. 1111-1115
    • Lagercrantz, U.1    Ellegren, H.2    Andersson, L.3
  • 23
    • 25444467752 scopus 로고    scopus 로고
    • Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
    • M La Rota R Kantety J-K Yu M Sorrells 2005 Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley BMC Genomics 6 23
    • (2005) BMC Genomics , vol.6 , pp. 23
    • La Rota, M.1    Kantety, R.2    Yu J-K3    Sorrells, M.4
  • 24
    • 33745033519 scopus 로고    scopus 로고
    • Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
    • M Lawson L Zhang 2006 Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes Genome Biol 7 R14
    • (2006) Genome Biol , vol.7 , pp. 14
    • Lawson, M.1    Zhang, L.2
  • 25
    • 0034882348 scopus 로고    scopus 로고
    • Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica
    • G Li CF Quiros 2001 Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica Theor Appl Genet 103 455 461
    • (2001) Theor Appl Genet , vol.103 , pp. 455-461
    • Li, G.1    Quiros, C.F.2
  • 29
    • 0034822851 scopus 로고    scopus 로고
    • A consensus linkage map for rapeseed (Brassica napus L.): construction and integration of three individual maps from DH populations
    • V Lombard R Delourme 2001 A consensus linkage map for rapeseed (Brassica napus L.): construction and integration of three individual maps from DH populations Theor Appl Genet 103 491 507
    • (2001) Theor Appl Genet , vol.103 , pp. 491-507
    • Lombard, V.1    Delourme, R.2
  • 31
    • 0036216474 scopus 로고    scopus 로고
    • Transferability and genome specificity of a new set of microsatellite primers among Brassica species of the U triangle
    • AJ Lowe AE Jones AF Raybould M Trick CL Moule KJ Edwards 2002 Transferability and genome specificity of a new set of microsatellite primers among Brassica species of the U triangle Mol Ecol Notes 2 7 11
    • (2002) Mol Ecol Notes , vol.2 , pp. 7-11
    • Lowe, A.J.1    Jones, A.E.2    Raybould, A.F.3    Trick, M.4    Moule, C.L.5    Edwards, K.J.6
  • 32
    • 2142727348 scopus 로고    scopus 로고
    • Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species
    • A Lowe C Moule M Trick K Edwards 2004 Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species Theor Appl Genet 108 1103 1112
    • (2004) Theor Appl Genet , vol.108 , pp. 1103-1112
    • Lowe, A.1    Moule, C.2    Trick, M.3    Edwards, K.4
  • 35
    • 21444437863 scopus 로고    scopus 로고
    • Mapping and tagging of seed coat colour and the identification of microsatellite markers for marker-assisted manipulation of the trait in Brassica juncea
    • KL Padmaja N Arumugam V Gupta A Mukhopadhyay YS Sodhi D Pental AK Pradhan 2005 Mapping and tagging of seed coat colour and the identification of microsatellite markers for marker-assisted manipulation of the trait in Brassica juncea Theor Appl Genet 111 8 14
    • (2005) Theor Appl Genet , vol.111 , pp. 8-14
    • Padmaja, K.L.1    Arumugam, N.2    Gupta, V.3    Mukhopadhyay, A.4    Sodhi, Y.S.5    Pental, D.6    Pradhan, A.K.7
  • 38
    • 0035027367 scopus 로고    scopus 로고
    • Microsatellite markers for genome analysis in Brassica. I. Development in Brassica napus and abundance in Brassicaceae species
    • J Plieske D Struss 2001 Microsatellite markers for genome analysis in Brassica. I. Development in Brassica napus and abundance in Brassicaceae species Theor Appl Genet 102 689 694
    • (2001) Theor Appl Genet , vol.102 , pp. 689-694
    • Plieske, J.1    Struss, D.2
  • 41
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • S Rozen H Skaletsky 2000 Primer3 on the WWW for general users and for biologist programmers Methods Mol Biol 132 365 386
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 42
    • 0035037717 scopus 로고    scopus 로고
    • Microsatellite markers for genome analysis in Brassica. II. Assignment of rapeseed microsatellites to the A and C genomes and genetic mapping in Brassica oleracea L
    • B Saal J Plieske J Hu CF Quiros D Struss 2001 Microsatellite markers for genome analysis in Brassica. II. Assignment of rapeseed microsatellites to the A and C genomes and genetic mapping in Brassica oleracea L Theor Appl Genet 102 695 699
    • (2001) Theor Appl Genet , vol.102 , pp. 695-699
    • Saal, B.1    Plieske, J.2    Hu, J.3    Quiros, C.F.4    Struss, D.5
  • 44
    • 0028116158 scopus 로고
    • Rapid silver staining and recovery of PCR products separated on polyacrylamide gels
    • CJ Sanguinetti E Dias Neto AJ Simpson 1994 Rapid silver staining and recovery of PCR products separated on polyacrylamide gels Biotechniques 17 914 921
    • (1994) Biotechniques , vol.17 , pp. 914-921
    • Sanguinetti, C.J.1    Dias Neto, E.2    Simpson, A.J.3
  • 47
    • 34047140358 scopus 로고    scopus 로고
    • The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean
    • J Shultz S Kazi R Bashir J Afzal D Lightfoot 2007 The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean Theor Appl Genet 114 1081 1090
    • (2007) Theor Appl Genet , vol.114 , pp. 1081-1090
    • Shultz, J.1    Kazi, S.2    Bashir, R.3    Afzal, J.4    Lightfoot, D.5
  • 49
    • 0036954883 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellites in Brassica rapa L
    • K Suwabe H Iketani T Nunome T Kage M Hirai 2002 Isolation and characterization of microsatellites in Brassica rapa L Theor Appl Genet 104 1092 1098
    • (2002) Theor Appl Genet , vol.104 , pp. 1092-1098
    • Suwabe, K.1    Iketani, H.2    Nunome, T.3    Kage, T.4    Hirai, M.5
  • 50
    • 3042556041 scopus 로고    scopus 로고
    • Characteristics of microsatellites in Brassica rapa genome and their potential utilization for comparative genomics in Cruciferae
    • K Suwabe H Iketani T Nunome A Ohyama M Hirai H Fukuoka 2004 Characteristics of microsatellites in Brassica rapa genome and their potential utilization for comparative genomics in Cruciferae Breed Sci 54 85 90
    • (2004) Breed Sci , vol.54 , pp. 85-90
    • Suwabe, K.1    Iketani, H.2    Nunome, T.3    Ohyama, A.4    Hirai, M.5    Fukuoka, H.6
  • 51
    • 42449093604 scopus 로고    scopus 로고
    • Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa
    • K Suwabe C Morgan I Bancroft 2008 Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa Genome 51 169 176
    • (2008) Genome , vol.51 , pp. 169-176
    • Suwabe, K.1    Morgan, C.2    Bancroft, I.3
  • 53
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential
    • S Temnykh G DeClerck A Lukashova L Lipovich S Cartinhour S McCouch 2001 Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential Genome Res 11 1441 1452
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 54
    • 0032824302 scopus 로고    scopus 로고
    • Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.)
    • MI Uzunova W Ecke 1999 Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.) Plant Breed 118 323 326
    • (1999) Plant Breed , vol.118 , pp. 323-326
    • Uzunova, M.I.1    Ecke, W.2
  • 55
    • 0029106677 scopus 로고
    • Mapping the genome of rapeseed (Brassica napus L.). I. Construction of an RFLP linkage map and localization of QTLs for seed glucosinolate content
    • M Uzunova W Ecke K Weissleder G Röbbelen 1995 Mapping the genome of rapeseed (Brassica napus L.). I. Construction of an RFLP linkage map and localization of QTLs for seed glucosinolate content Theor Appl Genet 90 194 204
    • (1995) Theor Appl Genet , vol.90 , pp. 194-204
    • Uzunova, M.1    Ecke, W.2    Weissleder, K.3    G. Röbbelen4
  • 57
    • 34948888668 scopus 로고    scopus 로고
    • Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in Brassica napus using a genome-walking technique
    • SS Xiao JS Xu Y Li L Zhang SJ Shi SW Shi JS Wu KD Liu 2007 Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in Brassica napus using a genome-walking technique Genome 50 611 618
    • (2007) Genome , vol.50 , pp. 611-618
    • Xiao, S.S.1    Xu, J.S.2    Li, Y.3    Zhang, L.4    Shi, S.J.5    Shi, S.W.6    Wu, J.S.7    Liu, K.D.8
  • 58
    • 33751207081 scopus 로고    scopus 로고
    • Exploitation of pepper EST-SSRs and an SSR-based linkage map
    • G Yi J Lee S Lee D Choi B-D Kim 2006 Exploitation of pepper EST-SSRs and an SSR-based linkage map Theor Appl Genet 114 113 130
    • (2006) Theor Appl Genet , vol.114 , pp. 113-130
    • Yi, G.1    Lee, J.2    Lee, S.3    Choi, D.4    Kim B-D5
  • 59
    • 33745209668 scopus 로고    scopus 로고
    • Conditional QTL mapping of oil content in rapeseed with respect to protein content and traits related to plant development and grain yield
    • JY Zhao HC Becker DQ Zhang YF Zhang W Ecke 2006 Conditional QTL mapping of oil content in rapeseed with respect to protein content and traits related to plant development and grain yield Theor Appl Genet 113 33 38
    • (2006) Theor Appl Genet , vol.113 , pp. 33-38
    • Zhao, J.Y.1    Becker, H.C.2    Zhang, D.Q.3    Zhang, Y.F.4    Ecke, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.