Methods for the isolation and investigation of the diversity of cold-adapted yeasts and their ex situ preservation in worldwide collections

Cold-adapted Yeasts: Biodiversity, Adaptation Strategies and Biotechnological Significance

Volumn 9783642396816, Issue , 2014, Pages 23-45

  Boundy Mills, Kyria L ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Psychrophilic and psychrotolerant yeasts; Yeast cultivation methods; Yeast culture collections

Indexed keywords

EID: 84892478121     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-39681-6_2     Document Type: Chapter

References (69)

1. Abyzov S (1993) Microorganisms in the Antarctic ice. In: Friedmann E (ed) Antarctic microbiology. Wile-Liss, New York, pp 265-295
2. Andrews S, DeGraaf H, Stamatin H (1997) Optimization of methodology for enumeration of xerophilic yeasts from foods. Int J Food Microbiol 35:109-116
3. Bandoni RJ (1972) Terrestrial occurrence of some aquatic hyphomycetes. Can J Bot 50:2283-2288
4. Bass D, Howe A, Brown N, Barton H, Demidova M, Michelle H, Li L, Sanders H, Watkinson SC, Willcock S (2007) Yeast forms dominate fungal diversity in the deep oceans. Proc Royal Soc B: Biol Sci 274:3069-3077
5. Bellemai E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G (2013) Fungal paleodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environ Microbiol 15:1176-1189
6. Bennett S (2004) Solexa ltd. Pharmacogenomics 5:433-438
7. Beuchat LR (1998) Progress in conventional methods for detection and enumeration of foodborne yeasts. Food Technol Biotechnol 36:267-272
8. Bokulich NA (2012) Next-generation approaches to the microbial ecology of food fermentations. Biochem Mol Biol Rep 45:377-389
9. Bokulich N, Hwang C, Liu S, Boundy-Mills K, Mills D (2012) Profiling the yeast communities of wine fermentations using terminal restriction fragment length polymorphism analysis. Am J Enol Vitic 63:185-194
10. Bokulich N, Ohta M, Richardson P, Mills D (2013) Monitoring seasonal changes in winery-resident microbiota. PLoS ONE, (in press)
11. Boundy-Mills K (2006) Methods for investigating yeast biodiversity. In: Rosa CA, Péter G (eds) Biodiversity and ecophysiology of yeasts. Springer, pp 67-100
12. Boundy-Mills K (2012) Yeast culture collections of the world: meeting the needs of industrial researchers. J Ind Microbiol Biotechnol 39:673-680
13. Brizzio S, Turchetti B, de Garcia V, Libkind D, Buzzini P, van Broock M (2007) Extracellular enzymatic activities of basidiomycetous yeasts isolated from glacial and subglacial waters of northwest Patagonia (Argentina). Can J Microbiol 53:519-525
14. Butinar L, Santos S, Spencer Martins I, Oren A, Gunde-Cimerman N (2005) Yeast diversity in hypersaline habitats. FEMS Microbiol Lett 244:229-234
15. Butinar L, Spencer-Martins I, Gunde-Cimerman N (2007) Yeasts in high Arctic glaciers: the discovery of a new habitat for eukaryotic microorganisms. A van Leeuwenhoek 91:277-289
16. Butinar L, Strmole T, Gunde-Cimerman N (2011) Relative incidence of ascomycetous yeasts in Arctic coastal environments. Microb Ecol 61:832-843
17. Buzzini P, Branda E, Goretti M, Turchetti B (2012) Psychrophilic yeasts from worldwide glacial habitats: diversity, adaptation strategies and biotechnological potential. FEMS Microbiol Ecol 82:217-241
18. Catranis C, Starmer W (1991) Microorganisms entrapped in glacial ice. Antarct J US 26:234-236
19. Cocolin L, Bisson L, Mills D (2000) Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol Lett 189:81-87
20. Cousin M, Jay J, Vasavada P (1992) Psychrotrophic microorganisms. Compendium Methods Microbiol Exam Food 3:153-165
21. Davenport R (1980) Cold-tolerant yeasts and yeast-like organisms. In: Skinner F, Passmore S, Davenport R (eds) Biology and activities of yeasts. Academic Press, London, pp 215-230
22. de García V, Brizzio S, Libkind D, Buzzini P, Van Broock M (2007) Biodiversity of cold-adapted yeasts from glacial meltwater rivers in Patagonia, Argentina. FEMS Microbiol Ecol 59:331-341
23. Deak T (2003) Detection, enumeration and isolation of yeasts. In: Boekhout T, Robert V (eds) Yeasts in food: beneficial and detrimental aspects. B. Behr's Verlag GmbH & Co, Hamburg, pp 39-68
24. Di Menna ME (1966) Yeasts in Antarctic soils. A van Leeuwenhoek 32:29-38
25. Ercolini D (2004) PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. J Microbiol Meth 56:297-314
26. Fell JW, Statzell-Tallman A, Kurtzman CP (2004) L. meyersii sp. nov., an ascosporogenous yeast from mangrove regions in the Bahama Islands. Stud Mycol 50:359-363
27. Fung DY (1999) Overview of rapid methods of microbiological analysis. Food Microbiol Analytical Methods: New Technol 12:1
28. Gilichinsky D, Rivkina E, Bakermans C, Shcherbakova V, Petrovskaya L, Ozerskaya S, Ivanushkina N, Kochkina G, Laurinavichuis K, Pecheritsina S (2005) Biodiversity of cryopegs in permafrost. FEMS Microbiol Ecol 53:117-128
29. Gronstal AL, Voytek MA, Kirshtein JD, Nicole M, Lowit MD, Cockell CS (2009) Contamination assessment in microbiological sampling of the Eyreville core, Chesapeake Bay impact structure. Geol Soc Am Special Papers 458:951-964
30. Gunde-Cimerman N, Zalar P, Hoog S, Plemenitaš A (2000) Hypersaline waters in salterns-natural ecological niches for halophilic black yeasts. FEMS Microbiol Ecol 32:235-240
31. Gunde-Cimerman N, Sonjak S, Zalar P, Frisvad JC, Diderichsen B, Plemenitaš A (2003) Extremophilic fungi in arctic ice: a relationship between adaptation to low temperature and water activity. Phys Chem Earth A/B/C 28:1273-1278
32. Hagler A, Ahearn D (1987) Ecology of aquatic yeasts. In: Rose A, Harrison J (eds) The yeasts, vol 2., Yeasts and the environmentAcademic Press, London, pp 181-205
33. Hamby KA, Hernández A, Boundy-Mills K, Zalom FG (2012) Associations of yeasts with spotted-wing Drosophila (Drosophila suzukii; Diptera: Drosophilidae) in cherries and raspberries. Appl Environ Microbiol 78:4869-4873
34. Hattori T (1980) A note on the effect of different types of agar on plate count of oligotrophic bacteria in soil. J Gen Appl Microbiol 26:373-374
35. Heard G, Fleet G (1986) Evaluation of selective media for enumeration of yeasts during wine fermentation. J Appl Bacteriol 60:477-481
36. Hernandez P, Beuchat L (1995) Evaluation of diluents and media for enumerating Zygosac-charomyces rouxii in blueberry syrup. Int J Food Microbiol 25:11-18
37. Hocking AD, Pitt JI (1980) Dichloran-glycerol medium for enumeration of Xerophilic fungi from low-moisture foods. Appl Environ Microbiol 39:488-492
38. Hocking A, Pitt J, Samson R, King A (1992) Recommendations from the closing session of SMMEF II. In: Samson R, Hocking A, Pitt J, King A (eds) Modern methods in food mycology. Elsevier, Amsterdam, pp 359-368
39. Ikemoto E, Kyo M (1993) Development of microbiological compact mud sampler. JAMSTEC Res 30:1-16
40. Kimball J, Corcoran EF, Wood FE (1963) Chlorophyll-containing microorganisms in the aphotic zone of the oceans. Bull Marine Sci 13:574-577
41. King A, Hocking A, Pitt J (1979) Dichloran-rose bengal medium for enumeration and isolation of molds from foods. Appl Environ Microbiol 37:959-964
42. Kutty SN, Philip R (2008) Marine yeasts: a review. Yeast 25:465-483
43. Libkind D, Brizzio S, Van Broock M (2004) R. mucilaginosa, a carotenoid producing yeast strain from a Patagonian high-altitude lake. Folia Microbiol 49:19-25
44. López-García P, Rodríguez-Valera F, Pedrós-Alió C, Moreira D (2001) Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. Nature 409:603-607
45. Ma L, Catranis CM, Starmer WT, Rogers SO (1999) Revival and characterization of fungi from ancient polar ice. Mycologist 13:70-73
46. Ma L-J, Rogers SO, Catranis CM, Starmer WT (2000) Detection and characterization of ancient fungi entrapped in glacial ice. Mycologia 92:286-295
47. Margesin R (ed) (2009) Permafrost soils. Springer, Berlin
48. Margesin R, Zacke G, Schinner F (2002) Characterization of heterotrophic microorganisms in Alpine glacier cryoconite. Arctic Antarct Alp Res 34:88-93
49. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen Y-J, Chen Z (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380
50. Martini A, Ciani M, Scorzetti G (1996) Direct enumeration and isolation of wine yeasts from grape surfaces. American J Enol Viticult 47:435-440
51. Montes MJ, Belloch C, Galiana M, Garcia MD, Andrés C, Ferrer S, Torres-Rodriguez JM, Guinea J (1999) Polyphasic taxonomy of a novel yeast isolated from Antarctic environment; description of Cryptococcus victoriae sp. nov. Syst Applied Microbiol 22:97-105
52. Nagahama T, Hamamoto M, Nakase T, Takami H, Horikoshi K (2001) Distribution and identification of red yeasts in deep-sea environments around the northwest Pacific Ocean. A van Leeuwenhoek 80:101-110
53. Nagahama T, Hamamoto M, Nakase T, Takaki Y, Horikoshi K (2003) Cryptococcus surugaensis sp. nov., a novel yeast species from sediment collected on the deep-sea floor of Suruga Bay. Int J Syst Evol Microbiol 53:2095-2098
54. Rogers S, Theraisnathan V, Ma L, Zhao Y, Zhang G, Shin S-G, Castello J, Starmer WT (2004) Comparisons of protocols for decontamination of environmental ice samples for biological and molecular examinations. Appl Environ Microbiol 70:2540-2544
55. Samson RA, Hoekstra ES, Frisvad JC (2004) Introduction to food-and airborne fungi, 7th edn. Centraalbureau voor Schimmelcultures (CBS), Utrecht
56. Schmidt-Lorenz W (1983) Indicator organisms in frozen foods in relation to spoilage. A van Leeuwenhoek 48:625-633
57. Shivaji S, Prasad G (2009) Antarctic yeasts: biodiversity and potential applications. In: Satyanarayana T, Kunze G (eds) Yeast biotechnology: diversity and applications. Springer, Berlin, pp 3-18
58. Singh P, Singh SM (2012) Characterization of yeast and filamentous fungi isolated from cryoconite holes of Svalbard, Arctic. Polar Biol 35:575-583
59. Sláviková E, Vadkertiová R, Kocková-Kratochvílová A (1992) Yeasts isolated from artificial lake waters. Can J Microbiol 38:1206-1209
60. Solís L, Sánchez E, García S, Heredia N (2009) Traditional methods for detection of foodborne pathogens. In: Heredia N, Wesley I (eds) Microbiologically safe foods. Wiley, Hoboken, pp 525-546
61. Tadych M (2008) International cooperative biodiversity groups central Asia project. Rutgers, The State University of New Jersey, USA
62. Tomkin R (1963) Refrigeration temperature as an environmental factor influencing the microbial quality of food: a review. Food Technol 27:54-58
63. Turchetti B, Buzzini P, Goretti M, Branda E, Diolaiuti G, D'Agata C, Smiraglia C, Vaughan-Martini A (2008) Psychrophilic yeasts in glacial environments of Alpine glaciers. FEMS Microbiol Ecol 63:73-83
64. Vishniac HS, Onofri S (2003) Cryptococcus antarcticus var. circumpolaris var. nov., a basidiomycetous yeast from Antarctica. A van Leeuwenhoek 83:231-233
65. Vishnivetskaya T, Kathariou S, McGrath J, Gilichinsky D, Tiedje JM (2000) Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments. Extremophiles 4:165-173
66. Vorobyova E, Soina V, Gorlenko M, Minkovskaya N, Zalinova N, Mamukelashvili A, Gilichinsky D, Rivkina E, Vishnivetskaya T (1997) The deep cold biosphere: facts and hypothesis. FEMS Microbiol Rev 20:277-290
67. Wagner D (2008) Microbial communities and processes in Arctic permafrost environments. In: Dion P, Nautiyal C (eds) Microbiology of extreme soils. Springer, Berlin, pp 133-154
68. Welthagen J, Viljoen B (1997) Comparison of ten media for the enumeration of yeasts in dairy products. Food Res Int 30:207-211
69. Zucconi L, Selbmann L, Buzzini P, Turchetti B, Guglielmin M, Frisvad J, Onofri S (2012) Searching for eukaryotic life preserved in Antarctic permafrost. Polar Biol 35:749-757