Phylogenetic prediction of the maximum per capita rate of population growth

Proceedings of the Royal Society B: Biological Sciences

Volumn 280, Issue 1763, 2013, Pages

  Fagan, William F ^a   Pearson, Yanthe E ^a,e   Larsen, Elise A ^a   Lynch, Heather J ^a,b   Turner, Jessica B ^a   Staver, Hilary ^a   Noble, Andrew E ^c   Bewick, Sharon ^a   Goldberg, Emma E ^a,d  

^a University of Maryland   (United States)

^b STONY BROOK UNIVERSITY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^e KHALIFA UNIVERSITY   (United Arab Emirates)

Author keywords

Caniformia; Intrinsic rate of natural increase; Macroevolutionary model; Mammal life history; Population doubling time; Species conservation

Indexed keywords

BODY MASS; ERROR ANALYSIS; GROWTH RATE; LIFE HISTORY TRAIT; LIFE TABLE; MACROECOLOGY; MAMMAL; PHYLOGENETICS; POPULATION ECOLOGY; POPULATION GROWTH; PREDICTION; SPECIES CONSERVATION;

CANIFORMIA; CERVIDAE; MAMMALIA;

ANIMAL; BIOLOGICAL MODEL; CANIDAE; CARNIVORA; CLASSIFICATION; EVALUATION STUDY; EVOLUTION; GENETICS; LIFE CYCLE STAGE; MAMMAL; PHYLOGENY; POPULATION GROWTH; PREDICTIVE VALUE; SURVIVAL RATE;

ANIMALS; BIOLOGICAL EVOLUTION; CANIDAE; CARNIVORA; LIFE CYCLE STAGES; MAMMALS; MODELS, BIOLOGICAL; PHYLOGENY; POPULATION GROWTH; PREDICTIVE VALUE OF TESTS; SURVIVAL RATE;

EID: 84892405329     PISSN: 09628452     EISSN: 14712954     Source Type: Journal    
DOI: 10.1098/rspb.2013.0523     Document Type: Article

References (59)

1. Caughley G. 1980 Analysis of vertebrate populations. New York, NY: John Wiley & Sons.
2. Mace GM, Collar NJ, Gaston KJ, Hilton-Taylor C, Akcakaya HR, Leader-Williams N, Miliner-Gulland EJ, Stuart SN. 2008 Quantification of extinction risk: IUCN's system for classifying threatened species. Conserv. Biol. 22, 1424-1442. (doi:10.1111/j.1523-1739.2008.01044. x)
3. Sibly RM, Hone J. 2002 Population growth rate and its determinants: an overview. Phil. Trans. R. Soc. Lond. B 357, 1153-1170. (doi:10.1098/rstb. 2002.1117)
4. Coulson T, Mace GM, Hudson E, Possingham H. 2001 The use and abuse of population viability analysis. Trends Ecol. Evol. 16, 219-221. (doi:10.1016/ S0169-5347(01)02137-1)
5. Cole LC. 1954 The population consequences of life history phenomena. Q. Rev. Biol. 29, 103-137. (doi:10.1086/400074)
6. Blueweiss L, Fox H, Kudzma V, Nakashima D, Peters R, Sams S. 1978 Relationships between body size and some life history parameters. Oecologia 37, 257-272. (doi:10.1007/BF00344996)
7. Charnov EL. 1993 Life history invariants: some explorations of symmetry in evolutionary ecology. Oxford, UK: Oxford University Press.
8. Saether B, Bakke O. 2000 Avian life history variation and contribution of demographic traits to the population growth rate. Ecology 81, 642-653.
9. Pereira HM, Daily GC, Roughgarden J. 2004 A framework for assessing the relative vulnerability of species to land-use change. Ecol. Appl. 14, 730-742. (doi:10.1890/02-5405)
10. Savage VM, Gillooly JF, Brown JH, West GB, Charnov EL. 2004 Effects of body size and temperature on population growth. Am. Nat. 163, 429-441. (doi:10.1086/381872)
11. Lynch HJ, Fagan WF. 2009 Survivorship curves and their impact on the estimation of maximum population growth rates. Ecology 90, 1116-1124. (doi:10.1890/08-0286.1)
12. Fagan WF, Lynch HJ, Noon BR. 2010 Pitfalls and challenges of estimating population growth rate from empirical data: consequences for allometric scaling relations. Oikos 119, 455-464. (doi:10. 1111/j.1600-0706.2009.18002. x)
13. Hone J, Duncan RP, Forsyth DM. 2010 Estimates of maximum annual population growth rates (rm) of mammals and their application in wildlife management. J. Appl. Ecol. 47, 507-514. (doi:10. 1111/j.1365-2664.2010.01812. x)
14. Keyfitz N. 1985 Applied mathematical demography, 2nd edn. Berlin, Germany: Springer.
15. Kot M. 2001 Elements of mathematical ecology, p. 453. Cambridge, UK: Cambridge University Press.
16. Salguero-Gomez R, Jones OR, Vaupel JR, Baudisch A, Scheuerlein A, Conde Ovando DA, Colchero F. 2013 The comADRe demographic database. See http://www.demogr.mpg.de/en/laboratories/ evolutionary_biodemography_1171/projects/ compadre_iii_and_comadre_demographic_ databases_1867.htm
17. Pereira HM, Daily GC. 2006 Modeling biodiversity dynamics in countryside landscapes. Ecology 87, 1877-1885. (doi:10.1890/0012-9658(2006)87[1877:MBDICL]2.0. CO;2)
18. Robinson JG, Redford KH. 1986 Intrinsic rate of natural increase in Neotropical forest mammals: relationship to phylogeny and diet. Oecologia 68, 516-520. (doi:10.1007/BF00378765)
19. Duncan RP, Forsyth DM, Hone J. 2007 Testing the metabolic theory of ecology: allometric scaling exponents in mammals. Ecology 88, 324-333. (doi:10.1890/0012-9658(2007)88[324:TTMTOE]2.0. CO;2)
20. Roff DA. 2002 Life history evolution. Sunderland, MA: Sinauer Associates.
21. Promislow DEL, Harvey PH. 1990 Living fast and dying young: a comparative analysis of life-history variation among mammals. J. Zool. 220, 417-437. (doi:10.1111/j.1469-7998.1990. tb04316. x)
22. Bielby J, Mace GM, Bininda-Emonds ORP, Cardillo M, Gittleman JL, Jones KE, Orme CDL, Purvis A. 2007 The fast-slow continuum in mammalian life history: an empirical reevaluation. Am. Nat. 169, 748-757. (doi:10.1086/516847)
23. Webb CO, Ackerly DD, McPeek MA, Donoghue MJ. 2002 Phylogenies and community ecology. Annu. Rev. Ecol. Syst. 33, 475-505. (doi:10.1146/annurev. ecolsys.33.010802.150448)
24. Jombart T, Pavoine S, Devillard S, Pontier D. 2010 Putting phylogeny into the analysis of biological traits: a methodological approach. J. Theoret. Biol. 264, 693-701. (doi:10.1016/j. jtbi.2010.03.038)
25. Purvis A, Agapow P, Gittleman JL, Mace GM. 2000 Nonrandom extinction and the loss of evolutionary history. Science 288, 328-330. (doi:10.1126/ science.288.5464.328)
26. Cardillo M, Mace GM, Gittleman JL, Jones KE, Bielby J, Purvis A. 2008 The predictability of extinction: biological and external correlates of decline in mammals. Proc. R. Soc. B 275, 1441-1448. (doi:10.1098/rspb.2008.0179)
27. Cooper N, Freckleton RP, Jetz W. 2011 Phylogenetic conservatism of environmental niches in mammals. Proc. R. Soc. B 278, 2384-2391. (doi:10.1098/rspb. 2010.2207)
28. Felsenstein J. 1985 Phylogenies and the comparative method. Am. Nat. 125, 1-15. (doi:10.1086/284325)
29. Garland Jr T, Midford PE, Ives AR. 1999 An introduction to phylogenetically based statistical methods with a new method for confidence intervals on ancestral values. Am. Zool. 39, 374-388.
30. Garland Jr T, Ives AR. 2000 Using the past to predict the present: confidence intervals for regression equations in phylogenetic comparative methods. Am. Nat. 155, 346-357. (doi:10.1086/303327)
31. Walker EP, Nowak RM, Paradiso JL. 1983 Walker's mammals of the world. Baltimore, MD: Johns Hopkins University Press.
32. Ernest SKM. 2003 Life history characteristics of placental nonvolant mammals. Ecology 84, 3402. (doi:10.1890/02-9002)
33. Jones KE et al. 2009 PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90, 2648. (doi:10.1890/08-1494.1)
34. Forsyth DM, Duncan RP. 2001 Propagule size and the relative success of exotic ungulate and bird introductions to New Zealand. Am. Nat. 157, 583-595. (doi:10.1086/320626)
35. Swenson NG. 2009 Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities. PLoS ONE 4, e4390. (doi:10.1371/journal. pone.0004390)
36. Agnarsson I, Kuntner M, May-Collado LJ. 2010 Dogs, cats, and kin: a molecular species-level phylogeny of Carnivora. Mol. Phylogenet. Evol. 54, 726-745. (doi:10.1016/j. ympev.2009.10.033)
37. Sanderson MJ. 2002 Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19, 101-109. (doi:10.1093/oxfordjournals. molbev. a003974)
38. Bininda-Emonds ORP et al. 2007 The delayed rise of present-day mammals. Nature 446, 507-512. (doi:10.1038/nature05634)
39. Blomberg SP, Garland T, Ives AR. 2003 Testing for phylogenetic signal in comparative data: behavioral traits are more labile. Evolution 57, 717-745.
40. Pagel M. 1999 Inferring the historical patterns of biological evolution. Nature 401, 877-884. (doi:10. 1038/44766)
41. Revell LJ. 2010 Phylogenetic signal and linear regression on species data. Methods Ecol. Evol. 1, 319-329. (doi:10.1111/j.2041-210X.2010.00044. x)
42. Boettiger C, Coop G, Ralph R. 2012 Is your phylogeny informative? Measuring the power of comparative methods. Evolution 66, 2240-2251. (doi:10.1111/j.1558-5646.2011.01574. x)
43. Ives AR, Midford PE, Garland T. 2007 Within-species variation and measurement error in phylogenetic comparative methods. Syst. Biol. 56, 252-270. (doi:10.1080/10635150701313830)
44. Mace GM, Lande R. 1991 Assessing extinction threats: toward a reevaluation of IUCN threatened species categories. Conserv. Biol. 5, 148-157. (doi:10.1111/j.1523-1739.1991. tb00119. x)
45. Heppell SS, Caswell H, Crowder LB. 2000 Life histories and elasticity patterns: perturbation analysis for species with minimal demographic data. Ecology 81, 654-665. (doi:10.1890/0012-9658(2000)081[0654:LHAEPP]2.0. CO;2)
46. Fagan W, Meir E, Prendergast J, Folarin A, Karieva P. 2001 Characterizing population vulnerability for 758 species. Ecol. Lett. 4, 132-138. (doi:10.1046/j. 1461-0248.2001.00206. x)
47. Cortés E. 2002 Incorporating uncertainty into demographic modeling: application to shark populations and their conservation. Conserv. Biol. 16, 1048-1062. (doi:10.1046/j.1523-1739.2002. 00423. x)
48. Kokko H, Lopez-Sepulcre A. 2007 The ecogenetic link between demography and evolution: can we bridge the gap between theory and data? Ecol. Lett. 10, 773-782. (doi:10.1111/j.1461-0248.2007.01086. x)
49. Coulson T, Tuljapurkar S, Childs D. 2010 Using evolutionary demography to link life history theory, quantitative genetics and population ecology. J. Anim. Ecol. 79, 1226-1240. (doi:10.1111/j.1365-2656.2010.01734. x)
50. Reed TE, Schindler DE, Waples R. 2010 Interacting effects of phenotypic plasticity and evolution on population persistence in a changing climate. Conserv. Biol. 25, 56-63. (doi:10.1111/j.1523-1739. 2010.01552. x)
51. Faith DP. 1992 Conservation evaluation and phylogenetic diversity. Biol. Conserv. 61, 1-10. (doi:10.1016/0006-3207(92)91201-3)
52. Johnson CN. 1998 Species extinction and the relationship between distribution and abundance. Nature 394, 272-274. (doi:10.1038/28385)
53. Harris S, Yalden D. 2008 Mammals of the British Isles: handbook, 4th edn. Southampton, UK: The Mammal Society.
54. Huston M. 1979 A general hypothesis of species diversity. Am. Nat. 113, 81-101. (doi:10.1086/ 283366)
55. Geritz SAH, Metz JAJ, Kisdi E, Meszéna G. 1997 Dynamics of adaptation and evolutionary branching. Phys. Rev. Lett. 78, 2024-2027. (doi:10.1103/ PhysRevLett.78.2024)
56. Liou LW, Price TD. 1994 Speciation by reinforcement of premating isolation. Evolution 48, 1451-1459. (doi:10.2307/2410239)
57. Martin AP, Palumbi SR. 1993 Body size, metabolic rate, generation time, and the molecular clock. Proc. Natl Acad. Sci. USA 90, 4087-4091. (doi:10.1073/ pnas.90.9.4087)
58. Smith SA, Donoghue MJ. 2008 Rates of molecular evolution are linked to life history in flowering plants. Science 322, 86-89. (doi:10.1126/science. 1163197)
59. FitzJohn RG. 2010 Quantitative traits and diversification. Syst. Biol. 59, 619-633. (doi:10.1093/sysbio/syq053)