Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities

PLoS ONE

Volumn 4, Issue 2, 2009, Pages

  Swenson, Nathan G ^a  

^a HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER MODEL; COMPUTER SIMULATION; CONTROLLED STUDY; DATA BASE; FALSE NEGATIVE RESULT; FALSE POSITIVE RESULT; GENETIC VARIABILITY; PHYLOGENETIC TREE; PHYLOGENY; POPULATION DISPERSION; POPULATION GENETICS; QUANTITATIVE ANALYSIS; SAMPLING ERROR; SENSITIVITY ANALYSIS; SPECIES DIVERSITY; TAXONOMY;

EID: 84887212576     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0004390     Document Type: Article

References (27)

1. Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biol Cons 61: 1-10.
2. Faith DP (1994) Genetic diversity and taxonomic priorities for conservation. Biol Cons 68: 69-74.
3. Losos J (1996) Phylogenetic perspectives on community ecology. Ecology 77: 1344-1354.
4. Crozier RH (1997) Preserving the information content of species: genetic diversity, phylogeny, and conservation worth. Ann Rev Ecol Syst 28: 243-268.
5. Sechrest W, Brooks TM, da Fonseca GAB, Konstant WR, Mittiermeier RA, et al. (2002) Hotspots and the conservation of evolutionary history. Proc Natl Acad Sci U S A 99: 2067-2071.
6. Webb CO (2000) Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. Amer Nat 156: 145-155.
7. Barker GM (2002) Phylogenetic diversity: a quantitative framework for measurement of priority and achievement in biodiversity conservation. Biol J Linn Soc 76: 165-194.
8. Faith DP (2002) Quantifying biodiversity: a phylogenetic perspective. Cons Biol 16: 248-252.
9. Webb CO, Ackerly DD, McPeek MA, Donoghue MJ (2002) Phylogenies and community ecology. Ann Rev Ecol Syst 33: 475-505.
10. Faith DP, Baker AM (2006) Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges. Evol Bioinfo Online 2: 70-77.
11. Swenson NG, Enquist BJ, Pither J, Thompson J, Zimmerman JK (2006) The problem and promise of scale dependency in community phylogenetics. Ecology 87: 2418-2424.
12. Swenson NG, Enquist BJ, Thompson J, Zimmerman JK (2007) The influence of spatial and size scale on phylogenetic relatedness in tropical forest communities. Ecology 88: 1770-1780.
13. Rodrigues ASL, Gaston KJ (2002) Maximising phylogenetic diversity in the selection of networks of conservation areas. Biol Cons 105: 103-111.
14. Felsenstein J (1985) Phylogenies and the comparative method. Amer Nat 125: 1-15.
15. Grafen A (1989) The phylogenetic regression. Phil Trans Roy Soc B 326: 119-156.
16. Harvey PH, Pagel MD (1991) The Comparative Method in Evolutionary Biology. Oxford University Press.
17. Pagel MD (1992) A method for the analysis of comparative data. J Theo Biol 145: 431-442.
18. Martin EP, Garland T Jr (1991) Phylogenetic analyses of the correlated evolution of continuous characters: a simulation study. Evolution 45: 534-557.
19. Grafen A (1992) The uniqueness of the phylogenetic regression. J Theo Biol 156: 405-423.
20. Purvis A, Garland T Jr (1993) Polytomies in comparative analyses of continuous characters. Syst Biol 42: 569-575.
21. Cavender-Bares J, Keen A, Miles D (2006) Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale. Ecology 87(Supplement): S109-S122.
22. Kembel SW, Hubbell SP (2006) The phylogenetic structure of a neotropical forest tree community. Ecology 87(Supplement): S86-S99.
23. Minh BQ, Klaere S, von Haeseler A (2006) Phylogenetic diversity within seconds. Syst Biol 55: 769-773.
24. Nee S (2006) Birth-death models in macroevolution. Ann Rev Ecol Syst 37: 1-17.
25. Steel M (2005) Phylogenetic diversity and the greedy algorithm. Syst Biol 54: 527-529.
26. Gotelli NJ, Entsminger GL (2001) Swap and fill algorithms in null model analysis: rethinking the knight's tour. Oecologia 129: 281-291.
27. Webb CO, Ackerly DD, Kembel SW (2008) Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 18: 2098-2100.