-
1
-
-
0034444676
-
Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli
-
Chilcott GS, Hughes KT. 2000. Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli. Microbiol. Mol. Biol. Rev. 64:694-708. http://dx.doi.org/10.1128/MMBR.64.4.694-708.2000.
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 694-708
-
-
Chilcott, G.S.1
Hughes, K.T.2
-
2
-
-
0029130181
-
Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR
-
Shin S, Park C. 1995. Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR. J. Bacteriol. 177:4696-4702.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4696-4702
-
-
Shin, S.1
Park, C.2
-
3
-
-
0014053906
-
The effect of environmental conditions on the motility of Escherichia coli
-
Adler J, Templeton B. 1967. The effect of environmental conditions on the motility of Escherichia coli. J. Gen. Microbiol. 46:175-184. http://dx.doi.org/10.1099/00221287-46-2-175.
-
(1967)
J. Gen. Microbiol.
, vol.46
, pp. 175-184
-
-
Adler, J.1
Templeton, B.2
-
4
-
-
0032796421
-
Multiple control of flagellum biosynthesis in Escherichia coli: role of H-NS protein and the cyclic AMP-catabolite activator protein complex in transcription of the flhDC master operon
-
Soutourina O, Kolb A, Krin E, Laurent-Winter C, Rimsky S, Danchin A, Bertin P. 1999. Multiple control of flagellum biosynthesis in Escherichia coli: role of H-NS protein and the cyclic AMP-catabolite activator protein complex in transcription of the flhDC master operon. J. Bacteriol. 181:7500-7508.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 7500-7508
-
-
Soutourina, O.1
Kolb, A.2
Krin, E.3
Laurent-Winter, C.4
Rimsky, S.5
Danchin, A.6
Bertin, P.7
-
5
-
-
0036068774
-
LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli
-
Lehnen D, Blumer C, Polen T, Wackwitz B, Wendisch VF, Unden G. 2002. LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli. Mol. Microbiol. 45:521-532. http://dx.doi.org/10.1046/j.1365-2958.2002.03032.x.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 521-532
-
-
Lehnen, D.1
Blumer, C.2
Polen, T.3
Wackwitz, B.4
Wendisch, V.F.5
Unden, G.6
-
6
-
-
0038028679
-
Integration host factor (IHF) mediates repression of flagella in enteropathogenic and enterohaemorrhagic Escherichia coli
-
Yona-Nadler C, Umanski T, Aizawa S, Friedberg D, Rosenshine I. 2003. Integration host factor (IHF) mediates repression of flagella in enteropathogenic and enterohaemorrhagic Escherichia coli. Microbiology 149:877-884. http://dx.doi.org/10.1099/mic.0.25970-0.
-
(2003)
Microbiology
, vol.149
, pp. 877-884
-
-
Yona-Nadler, C.1
Umanski, T.2
Aizawa, S.3
Friedberg, D.4
Rosenshine, I.5
-
7
-
-
78651086262
-
Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli
-
Dong T, Yu R, Schellhorn H. 2011. Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli. Mol. Microbiol. 79:375-386. http://dx.doi.org/10.1111/j.1365-2958.2010.07449.x.
-
(2011)
Mol. Microbiol.
, vol.79
, pp. 375-386
-
-
Dong, T.1
Yu, R.2
Schellhorn, H.3
-
8
-
-
0028327173
-
Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay
-
Stojiljkovic I, Baumler AJ, Hantke K. 1994. Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay. J. Mol. Biol. 236:531-545.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 531-545
-
-
Stojiljkovic, I.1
Baumler, A.J.2
Hantke, K.3
-
9
-
-
70350144292
-
NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility
-
Partridge JD, Bodenmiller DM, Humphrys MS, Spiro S. 2009. NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility. Mol. Microbiol. 73:680-694. http://dx.doi.org/10.1111/j.1365-2958.2009.06799.x.
-
(2009)
Mol. Microbiol.
, vol.73
, pp. 680-694
-
-
Partridge, J.D.1
Bodenmiller, D.M.2
Humphrys, M.S.3
Spiro, S.4
-
10
-
-
63049137897
-
Principles of c-di-GMP signalling in bacteria
-
Hengge R. 2009. Principles of c-di-GMP signalling in bacteria. Nat. Rev. Microbiol. 7:263-273. http://dx.doi.org/10.1038/nrmicro2109.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 263-273
-
-
Hengge, R.1
-
11
-
-
72049100690
-
DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade
-
Lemke JJ, Durfee T, Gourse RL. 2009. DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade. Mol. Microbiol. 74:1368-1379. http://dx.doi.org/10.1111/j.1365-2958.2009.06939.x.
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 1368-1379
-
-
Lemke, J.J.1
Durfee, T.2
Gourse, R.L.3
-
12
-
-
25144457037
-
Transcriptional regulation of flhDC by QseBC and sigma (FliA) in enterohaemorrhagic Escherichia coli
-
Clarke MB, Sperandio V. 2005. Transcriptional regulation of flhDC by QseBC and sigma (FliA) in enterohaemorrhagic Escherichia coli. Mol. Microbiol. 57:1734-1749. http://dx.doi.org/10.1111/j.1365-2958.2005.04792.x.
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 1734-1749
-
-
Clarke, M.B.1
Sperandio, V.2
-
13
-
-
30744444010
-
Autoinducer 2 controls biofilm formation in Escherichia coli through a novel motility quorum-sensing regulator (MqsR, B3022)
-
Gonzalez Barrios AF, Zuo R, Hashimoto Y, Yang L, Bentley WE, Wood TK. 2006. Autoinducer 2 controls biofilm formation in Escherichia coli through a novel motility quorum-sensing regulator (MqsR, B3022). J. Bacteriol. 188:305-316. http://dx.doi.org/10.1128/JB.188.1.305-316.2006.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 305-316
-
-
Gonzalez Barrios, A.F.1
Zuo, R.2
Hashimoto, Y.3
Yang, L.4
Bentley, W.E.5
Wood, T.K.6
-
14
-
-
0036274158
-
Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two-component regulatory system involved in the regulation of flagella and motility by quorum sensing in E. coli
-
Sperandio V, Torres AG, Kaper JB. 2002. Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two-component regulatory system involved in the regulation of flagella and motility by quorum sensing in E. coli. Mol. Microbiol. 43:809-821. http://dx.doi.org/10.1046/j.1365-2958.2002.02803.x.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 809-821
-
-
Sperandio, V.1
Torres, A.G.2
Kaper, J.B.3
-
15
-
-
57649220029
-
Control of RpoS in global gene expression of Escherichia coli in minimal media
-
Dong T, Schellhorn HE. 2009. Control of RpoS in global gene expression of Escherichia coli in minimal media. Mol. Genet. Genomics 281:19-33. http://dx.doi.org/10.1007/s00438-008-0389-3.
-
(2009)
Mol. Genet. Genomics
, vol.281
, pp. 19-33
-
-
Dong, T.1
Schellhorn, H.E.2
-
16
-
-
84868139700
-
Motility behavior of rpoS-deficient Escherichia coli analyzed by individual cell tracking
-
Ojima Y, Hakamada K, Nishinoue Y, Nguyen MH, Miyake J, Taya M. 2012. Motility behavior of rpoS-deficient Escherichia coli analyzed by individual cell tracking. J. Biosci. Bioeng. 114:652-656. http://dx.doi.org/10.1016/j.jbiosc.2012.06.014.
-
(2012)
J. Biosci. Bioeng.
, vol.114
, pp. 652-656
-
-
Ojima, Y.1
Hakamada, K.2
Nishinoue, Y.3
Nguyen, M.H.4
Miyake, J.5
Taya, M.6
-
17
-
-
84883624748
-
Expression dynamics of RpoS/Crldependent genes in Escherichia coli
-
Dudin O, Lacour S, Geiselmann J. 2013. Expression dynamics of RpoS/Crldependent genes in Escherichia coli. Res. Microbiol. 164:838-847. http://dx.doi.org/10.1016/j.resmic.2013.07.002.
-
(2013)
Res. Microbiol.
, vol.164
, pp. 838-847
-
-
Dudin, O.1
Lacour, S.2
Geiselmann, J.3
-
18
-
-
0037315037
-
Growth phase-coupled alterations in cell structure and function of Escherichia coli
-
Makinoshima H, Aizawa S, Hayashi H, Miki T, Nishimura A, Ishihama A. 2003. Growth phase-coupled alterations in cell structure and function of Escherichia coli. J. Bacteriol. 185:1338-1345. http://dx.doi.org/10.1128/JB.185.4.1338-1345.2003.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1338-1345
-
-
Makinoshima, H.1
Aizawa, S.2
Hayashi, H.3
Miki, T.4
Nishimura, A.5
Ishihama, A.6
-
19
-
-
14244256556
-
Genomewide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
-
Weber H, Polen T, Heuveling J, Wendisch VF, Hengge R. 2005. Genomewide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. J. Bacteriol. 187:1591-1603. http://dx.doi.org/10.1128/JB.187.5.1591-1603.2005.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
20
-
-
6044228192
-
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences
-
Lacour S, Landini P. 2004. SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. J. Bacteriol. 186:7186-7195. http://dx.doi.org/10.1128/JB.186.21.7186-7195.2004.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7186-7195
-
-
Lacour, S.1
Landini, P.2
-
21
-
-
13244259382
-
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12
-
Patten CL, Kirchhof MG, Schertzberg MR, Morton RA, Schellhorn HE. 2004. Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12. Mol. Genet. Genomics 272:580-591. http://dx.doi.org/10.1007/s00438-004-1089-2.
-
(2004)
Mol. Genet. Genomics
, vol.272
, pp. 580-591
-
-
Patten, C.L.1
Kirchhof, M.G.2
Schertzberg, M.R.3
Morton, R.A.4
Schellhorn, H.E.5
-
22
-
-
39249084651
-
RpoS regulation of gene expression during exponential growth of Escherichia coli K12
-
Dong T, Kirchhof MG, Schellhorn HE. 2008. RpoS regulation of gene expression during exponential growth of Escherichia coli K12. Mol. Genet. Genomics 279:267-277. http://dx.doi.org/10.1007/s00438-007-0311-4.
-
(2008)
Mol. Genet. Genomics
, vol.279
, pp. 267-277
-
-
Dong, T.1
Kirchhof, M.G.2
Schellhorn, H.E.3
-
23
-
-
0029810991
-
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions
-
Jishage M, Iwata A, Ueda S, Ishihama A. 1996. Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. J. Bacteriol. 178:5447-5451.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5447-5451
-
-
Jishage, M.1
Iwata, A.2
Ueda, S.3
Ishihama, A.4
-
24
-
-
0034666279
-
Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase
-
Maeda H, Fujita N, Ishihama A. 2000. Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase. Nucleic Acids Res. 28:3497-3503. http://dx.doi.org/10.1093/nar/28.18.3497.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3497-3503
-
-
Maeda, H.1
Fujita, N.2
Ishihama, A.3
-
25
-
-
57749104127
-
Binding of the unorthodox transcription activator, Crl, to the components of the transcription machinery
-
England P, Westblade LF, Karimova G, Robbe-Saule V, Norel F, Kolb A. 2008. Binding of the unorthodox transcription activator, Crl, to the components of the transcription machinery. J. Biol. Chem. 283:33455-33464. http://dx.doi.org/10.1074/jbc.M807380200.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 33455-33464
-
-
England, P.1
Westblade, L.F.2
Karimova, G.3
Robbe-Saule, V.4
Norel, F.5
Kolb, A.6
-
26
-
-
0035205423
-
Complex regulatory network controls initial adhesion and biofilm formation in Escherichia coli via regulation of the csgD gene
-
Prigent-Combaret C, Brombacher E, Vidal O, Ambert A, Lejeune P, Landini P, Dorel C. 2001. Complex regulatory network controls initial adhesion and biofilm formation in Escherichia coli via regulation of the csgD gene. J. Bacteriol. 183:7213-7223. http://dx.doi.org/10.1128/JB.183.24.7213-7223.2001.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 7213-7223
-
-
Prigent-Combaret, C.1
Brombacher, E.2
Vidal, O.3
Ambert, A.4
Lejeune, P.5
Landini, P.6
Dorel, C.7
-
27
-
-
33744717869
-
Crl activates transcription initiation of RpoS-regulated genes involved in the multicellular behavior of Salmonella enterica serovar Typhimurium
-
Robbe-Saule V, Jaumouille V, Prevost MC, Guadagnini S, Talhouarne C, Mathout H, Kolb A, Norel F. 2006. Crl activates transcription initiation of RpoS-regulated genes involved in the multicellular behavior of Salmonella enterica serovar Typhimurium. J. Bacteriol. 188:3983-3994. http://dx.doi.org/10.1128/JB.00033-06.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3983-3994
-
-
Robbe-Saule, V.1
Jaumouille, V.2
Prevost, M.C.3
Guadagnini, S.4
Talhouarne, C.5
Mathout, H.6
Kolb, A.7
Norel, F.8
-
28
-
-
51149098349
-
Inverse regulatory coordination of motility and curlimediated adhesion in Escherichia coli
-
Pesavento C, Becker G, Sommerfeldt N, Possling A, Tschowri N, Mehlis A, Hengge R. 2008. Inverse regulatory coordination of motility and curlimediated adhesion in Escherichia coli. Genes Dev. 22:2434-2446. http://dx.doi.org/10.1101/gad.475808.
-
(2008)
Genes Dev.
, vol.22
, pp. 2434-2446
-
-
Pesavento, C.1
Becker, G.2
Sommerfeldt, N.3
Possling, A.4
Tschowri, N.5
Mehlis, A.6
Hengge, R.7
-
29
-
-
61449200221
-
Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli
-
Sommerfeldt N, Possling A, Becker G, Pesavento C, Tschowri N, Hengge R. 2009. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Microbiology 155:1318-1331. http://dx.doi.org/10.1099/mic.0.024257-0.
-
(2009)
Microbiology
, vol.155
, pp. 1318-1331
-
-
Sommerfeldt, N.1
Possling, A.2
Becker, G.3
Pesavento, C.4
Tschowri, N.5
Hengge, R.6
-
30
-
-
33746415885
-
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli
-
Zaslaver A, Bren A, Ronen M, Itzkovitz S, Kikoin I, Shavit S, Liebermeister W, Surette MG, Alon U. 2006. A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3:623-628. http://dx.doi.org/10.1038/nmeth895.
-
(2006)
Nat. Methods
, vol.3
, pp. 623-628
-
-
Zaslaver, A.1
Bren, A.2
Ronen, M.3
Itzkovitz, S.4
Kikoin, I.5
Shavit, S.6
Liebermeister, W.7
Surette, M.G.8
Alon, U.9
-
31
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz MB, Leibler S. 2000. A synthetic oscillatory network of transcriptional regulators. Nature 403:335-338. http://dx.doi.org/10.1038/35002125.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
32
-
-
77951576054
-
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria
-
de Jong H, Ranquet C, Ropers D, Pinel C, Geiselmann J. 2010. Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria. BMC Syst. Biol. 4:55. http://dx.doi.org/10.1186/1752-0509-4-55.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 55
-
-
de Jong, H.1
Ranquet, C.2
Ropers, D.3
Pinel, C.4
Geiselmann, J.5
-
33
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. http://dx.doi.org/10.1038/msb4100050.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
34
-
-
0024558335
-
One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution
-
Chung CT, Niemela SL, Miller RH. 1989. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. U. S. A. 86:2172-2175. http://dx.doi.org/10.1073/pnas.86.7.2172.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 2172-2175
-
-
Chung, C.T.1
Niemela, S.L.2
Miller, R.H.3
-
35
-
-
0037094370
-
Construction of targeted single copy lac fusions using lambda Red and FLP-mediated sitespecific recombination in bacteria
-
Ellermeier CD, Janakiraman A, Slauch JM. 2002. Construction of targeted single copy lac fusions using lambda Red and FLP-mediated sitespecific recombination in bacteria. Gene 290:153-161. http://dx.doi.org/10.1016/S0378-1119(02)00551-6.
-
(2002)
Gene
, vol.290
, pp. 153-161
-
-
Ellermeier, C.D.1
Janakiraman, A.2
Slauch, J.M.3
-
36
-
-
77952867654
-
WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data
-
Boyer F, Besson B, Baptist G, Izard J, Pinel C, Ropers D, Geiselmann J, de Jong H. 2010. WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data. Bioinformatics 26:1262-1263. http://dx.doi.org/10.1093/bioinformatics/btq016.
-
(2010)
Bioinformatics
, vol.26
, pp. 1262-1263
-
-
Boyer, F.1
Besson, B.2
Baptist, G.3
Izard, J.4
Pinel, C.5
Ropers, D.6
Geiselmann, J.7
de Jong, H.8
-
37
-
-
84873877553
-
Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
-
Berthoumieux S, de Jong H, Baptist G, Pinel C, Ranquet C, Ropers D, Geiselmann J. 2013. Shared control of gene expression in bacteria by transcription factors and global physiology of the cell. Mol. Syst. Biol. 9:634. http://dx.doi.org/10.1038/msb.2012.70.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 634
-
-
Berthoumieux, S.1
de Jong, H.2
Baptist, G.3
Pinel, C.4
Ranquet, C.5
Ropers, D.6
Geiselmann, J.7
-
38
-
-
79956134862
-
Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis
-
Ogasawara H, Yamamoto K, Ishihama A. 2011. Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis. J. Bacteriol. 193:2587-2597. http://dx.doi.org/10.1128/JB.01468-10.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 2587-2597
-
-
Ogasawara, H.1
Yamamoto, K.2
Ishihama, A.3
-
39
-
-
34347374095
-
Genomic SELEX search for target promoters under the control of the PhoQP-RstBA signal relay cascade
-
Ogasawara H, Hasegawa A, Kanda E, Miki T, Yamamoto K, Ishihama A. 2007. Genomic SELEX search for target promoters under the control of the PhoQP-RstBA signal relay cascade. J. Bacteriol. 189:4791-4799. http://dx.doi.org/10.1128/JB.00319-07.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 4791-4799
-
-
Ogasawara, H.1
Hasegawa, A.2
Kanda, E.3
Miki, T.4
Yamamoto, K.5
Ishihama, A.6
-
40
-
-
0027048626
-
Genetics and biogenesis of bacterial flagella
-
Macnab RM. 1992. Genetics and biogenesis of bacterial flagella. Annu. Rev. Genet. 26:131-158. http://dx.doi.org/10.1146/annurev.ge.26.120192.001023.
-
(1992)
Annu. Rev. Genet.
, vol.26
, pp. 131-158
-
-
Macnab, R.M.1
-
41
-
-
21344438197
-
Binding and transcriptional activation of non-flagellar genes by the Escherichia coli flagellar master regulator FlhD2C2
-
Stafford GP, Ogi T, Hughes C. 2005. Binding and transcriptional activation of non-flagellar genes by the Escherichia coli flagellar master regulator FlhD2C2. Microbiology 151:1779-1788. http://dx.doi.org/10.1099/mic.0.27879-0.
-
(2005)
Microbiology
, vol.151
, pp. 1779-1788
-
-
Stafford, G.P.1
Ogi, T.2
Hughes, C.3
-
42
-
-
84876543942
-
RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
-
Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. 2013. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 41: D203-D213. http://dx.doi.org/10.1093/nar/gks1201.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Salgado, H.1
Peralta-Gil, M.2
Gama-Castro, S.3
Santos-Zavaleta, A.4
Muniz-Rascado, L.5
Garcia-Sotelo, J.S.6
Weiss, V.7
Solano-Lira, H.8
Martinez-Flores, I.9
Medina-Rivera, A.10
Salgado-Osorio, G.11
Alquicira-Hernandez, S.12
Alquicira-Hernandez, K.13
Lopez-Fuentes, A.14
Porron-Sotelo, L.15
Huerta, A.M.16
Bonavides-Martinez, C.17
Balderas-Martinez, Y.I.18
Pannier, L.19
Olvera, M.20
Labastida, A.21
Jimenez-Jacinto, V.22
Vega-Alvarado, L.23
Del Moral-Chavez, V.24
Hernandez-Alvarez, A.25
Morett, E.26
Collado-Vides, J.27
more..
-
43
-
-
84871114575
-
Prokaryotic genome regulation: a revolutionary paradigm
-
Ishihama A. 2012. Prokaryotic genome regulation: a revolutionary paradigm. Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 88:485-508. http://dx.doi.org/10.2183/pjab.88.485.
-
(2012)
Proc. Jpn. Acad. Ser. B Phys. Biol. Sci.
, vol.88
, pp. 485-508
-
-
Ishihama, A.1
-
44
-
-
0035142067
-
Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli
-
Phadtare S, Inouye M. 2001. Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli. J. Bacteriol. 183:1205-1214. http://dx.doi.org/10.1128/JB.183.4.1205-1214.2001.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1205-1214
-
-
Phadtare, S.1
Inouye, M.2
-
45
-
-
0037966962
-
Genes of the GadX-GadW regulon in Escherichia coli
-
Tucker DL, Tucker N, Ma Z, Foster JW, Miranda RL, Cohen PS, Conway T. 2003. Genes of the GadX-GadW regulon in Escherichia coli. J. Bacteriol. 185:3190-3201. http://dx.doi.org/10.1128/JB.185.10.3190-3201.2003.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3190-3201
-
-
Tucker, D.L.1
Tucker, N.2
Ma, Z.3
Foster, J.W.4
Miranda, R.L.5
Cohen, P.S.6
Conway, T.7
-
46
-
-
0031896213
-
Multicellular and aggregative behaviour of Salmonella typhimurium strains is controlled by mutations in the agfD promoter
-
Romling U, Sierralta WD, Eriksson K, Normark S. 1998. Multicellular and aggregative behaviour of Salmonella typhimurium strains is controlled by mutations in the agfD promoter. Mol. Microbiol. 28:249-264. http://dx.doi.org/10.1046/j.1365-2958.1998.00791.x.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 249-264
-
-
Romling, U.1
Sierralta, W.D.2
Eriksson, K.3
Normark, S.4
-
47
-
-
0037133315
-
Surface sensing and adhesion of Escherichia coli controlled by the Cpx-signaling pathway
-
Otto K, Silhavy TJ. 2002. Surface sensing and adhesion of Escherichia coli controlled by the Cpx-signaling pathway. Proc. Natl. Acad. Sci. U. S. A. 99:2287-2292. http://dx.doi.org/10.1073/pnas.042521699.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 2287-2292
-
-
Otto, K.1
Silhavy, T.J.2
-
48
-
-
14644435718
-
CpxR/OmpR interplay regulates curli gene expression in response to osmolarity in Escherichia coli
-
Jubelin G, Vianney A, Beloin C, Ghigo JM, Lazzaroni JC, Lejeune P, Dorel C. 2005. CpxR/OmpR interplay regulates curli gene expression in response to osmolarity in Escherichia coli. J. Bacteriol. 187:2038-2049. http://dx.doi.org/10.1128/JB.187.6.2038-2049.2005.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 2038-2049
-
-
Jubelin, G.1
Vianney, A.2
Beloin, C.3
Ghigo, J.M.4
Lazzaroni, J.C.5
Lejeune, P.6
Dorel, C.7
-
49
-
-
77955164044
-
Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors
-
Ogasawara H, Yamada K, Kori A, Yamamoto K, Ishihama A. 2010. Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors. Microbiology 156:2470-2483. http://dx.doi.org/10.1099/mic.0.039131-0.
-
(2010)
Microbiology
, vol.156
, pp. 2470-2483
-
-
Ogasawara, H.1
Yamada, K.2
Kori, A.3
Yamamoto, K.4
Ishihama, A.5
-
50
-
-
0028170344
-
Sigma S-dependent growthphase induction of the csgBA promoter in Escherichia coli can be achieved in vivo by sigma 70 in the absence of the nucleoid-associated protein H-NS
-
Arnqvist A, Olsen A, Normark S. 1994. Sigma S-dependent growthphase induction of the csgBA promoter in Escherichia coli can be achieved in vivo by sigma 70 in the absence of the nucleoid-associated protein H-NS. Mol. Microbiol. 13:1021-1032. http://dx.doi.org/10.1111/j.1365-2958.1994.tb00493.x.
-
(1994)
Mol. Microbiol.
, vol.13
, pp. 1021-1032
-
-
Arnqvist, A.1
Olsen, A.2
Normark, S.3
-
51
-
-
69249146924
-
Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933
-
Dong T, Schellhorn HE. 2009. Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933. BMC Genomics 10:349. http://dx.doi.org/10.1186/1471-2164-10-349.
-
(2009)
BMC Genomics
, vol.10
, pp. 349
-
-
Dong, T.1
Schellhorn, H.E.2
-
52
-
-
33644866120
-
Gene expression regulation by the curli activator CsgD protein: modulation of cellulose biosynthesis and control of negative determinants for microbial adhesion
-
Brombacher E, Baratto A, Dorel C, Landini P. 2006. Gene expression regulation by the curli activator CsgD protein: modulation of cellulose biosynthesis and control of negative determinants for microbial adhesion. J. Bacteriol. 188:2027-2037. http://dx.doi.org/10.1128/JB.188.6.2027-2037.2006.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 2027-2037
-
-
Brombacher, E.1
Baratto, A.2
Dorel, C.3
Landini, P.4
-
53
-
-
0142042867
-
The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli
-
Brombacher E, Dorel C, Zehnder AJ, Landini P. 2003. The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli. Microbiology 149:2847-2857. http://dx.doi.org/10.1099/mic.0.26306-0.
-
(2003)
Microbiology
, vol.149
, pp. 2847-2857
-
-
Brombacher, E.1
Dorel, C.2
Zehnder, A.J.3
Landini, P.4
-
54
-
-
33645844248
-
Regulation of flagella
-
McCarter LL. 2006. Regulation of flagella. Curr. Opin. Microbiol. 9:180-186. http://dx.doi.org/10.1016/j.mib.2006.02.001.
-
(2006)
Curr. Opin. Microbiol.
, vol.9
, pp. 180-186
-
-
McCarter, L.L.1
-
55
-
-
0033021173
-
Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival
-
Ishihama A. 1999. Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival. Genes Cells 4:135-143. http://dx.doi.org/10.1046/j.1365-2443.1999.00247.x.
-
(1999)
Genes Cells
, vol.4
, pp. 135-143
-
-
Ishihama, A.1
-
56
-
-
0038309658
-
Production of cellulose and curli fimbriae by members of the family Enterobacteriaceae isolated from the human gastrointestinal tract
-
Zogaj X, Bokranz W, Nimtz M, Romling U. 2003. Production of cellulose and curli fimbriae by members of the family Enterobacteriaceae isolated from the human gastrointestinal tract. Infect. Immun. 71:4151-4158. http://dx.doi.org/10.1128/IAI.71.7.4151-4158.2003.
-
(2003)
Infect. Immun.
, vol.71
, pp. 4151-4158
-
-
Zogaj, X.1
Bokranz, W.2
Nimtz, M.3
Romling, U.4
-
57
-
-
33745160404
-
Large-scale identification of protein-protein interaction of Escherichia coli K-12
-
Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C, Mori H. 2006. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16:686-691. http://dx.doi.org/10.1101/gr.4527806.
-
(2006)
Genome Res.
, vol.16
, pp. 686-691
-
-
Arifuzzaman, M.1
Maeda, M.2
Itoh, A.3
Nishikata, K.4
Takita, C.5
Saito, R.6
Ara, T.7
Nakahigashi, K.8
Huang, H.C.9
Hirai, A.10
Tsuzuki, K.11
Nakamura, S.12
Altaf-Ul-Amin, M.13
Oshima, T.14
Baba, T.15
Yamamoto, N.16
Kawamura, T.17
Ioka-Nakamichi, T.18
Kitagawa, M.19
Tomita, M.20
Kanaya, S.21
Wada, C.22
Mori, H.23
more..
-
58
-
-
84892658301
-
SigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition
-
Landini P, Egli T, Wolf J, Lacour S. 2013. SigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition. Environ. Microbiol. Rep. http://dx.doi.org/10.1111/1758-2229.12112.
-
(2013)
Environ. Microbiol. Rep
-
-
Landini, P.1
Egli, T.2
Wolf, J.3
Lacour, S.4
-
59
-
-
76949089832
-
Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
-
Dillon SC, Dorman CJ. 2010. Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat. Rev. Microbiol. 8:185-195. http://dx.doi.org/10.1038/nrmicro2261.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 185-195
-
-
Dillon, S.C.1
Dorman, C.J.2
-
60
-
-
0037582107
-
Regulation of crp transcription by oscillation between distinct nucleoprotein complexes
-
Gonzalez-Gil G, Kahmann R, Muskhelishvili G. 1998. Regulation of crp transcription by oscillation between distinct nucleoprotein complexes. EMBO J. 17:2877-2885. http://dx.doi.org/10.1093/emboj/17.10.2877.
-
(1998)
EMBO J.
, vol.17
, pp. 2877-2885
-
-
Gonzalez-Gil, G.1
Kahmann, R.2
Muskhelishvili, G.3
-
61
-
-
0028951033
-
The Cpx two-component signal transduction pathway of Escherichia coli regulates transcription of the gene specifying the stress-inducible periplasmic protease, DegP
-
Danese PN, Snyder WB, Cosma CL, Davis LJ, Silhavy TJ. 1995. The Cpx two-component signal transduction pathway of Escherichia coli regulates transcription of the gene specifying the stress-inducible periplasmic protease, DegP. Genes Dev. 9:387-398. http://dx.doi.org/10.1101/gad.9.4.387.
-
(1995)
Genes Dev.
, vol.9
, pp. 387-398
-
-
Danese, P.N.1
Snyder, W.B.2
Cosma, C.L.3
Davis, L.J.4
Silhavy, T.J.5
-
62
-
-
0032728835
-
The CpxRA signal transduction system of Escherichia coli: growth-related autoactivation and control of unanticipated target operons
-
De Wulf P, Kwon O, Lin ECC. 1999. The CpxRA signal transduction system of Escherichia coli: growth-related autoactivation and control of unanticipated target operons. J. Bacteriol. 181:6772-6778.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6772-6778
-
-
De Wulf, P.1
Kwon, O.2
Lin, E.C.C.3
-
63
-
-
33746462208
-
Characterization of copper-inducible promoters regulated by CpxA/CpxR in Escherichia coli
-
Yamamoto K, Ishihama A. 2006. Characterization of copper-inducible promoters regulated by CpxA/CpxR in Escherichia coli. Biosci. Biotechnol. Biochem. 70:1688-1695. http://dx.doi.org/10.1271/bbb.60024.
-
(2006)
Biosci. Biotechnol. Biochem.
, vol.70
, pp. 1688-1695
-
-
Yamamoto, K.1
Ishihama, A.2
-
64
-
-
33750432511
-
Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli
-
Weber H, Pesavento C, Possling A, Tischendorf G, Hengge R. 2006. Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli. Mol. Microbiol. 62:1014-1034. http://dx.doi.org/10.1111/j.1365-2958.2006.05440.x.
-
(2006)
Mol. Microbiol.
, vol.62
, pp. 1014-1034
-
-
Weber, H.1
Pesavento, C.2
Possling, A.3
Tischendorf, G.4
Hengge, R.5
|