-
1
-
-
0016719935
-
MRNA methylation and protein synthesis in extracts from embryos of brine shrimp
-
Muthukrishnan, S. et al. mRNA methylation and protein synthesis in extracts from embryos of brine shrimp, Artemia salina. J. Biol. Chem. 250, 9336-9341 (1975).
-
(1975)
Artemia Salina. J. Biol. Chem.
, vol.250
, pp. 9336-9341
-
-
Muthukrishnan, S.1
-
2
-
-
0029001790
-
Yeast mRNA cap methyltransferase is a 50-kilodalton protein encoded by an essential gene
-
Mao, X., Schwer, B. & Shuman, S. Yeast mRNA cap methyltransferase is a 50-kilodalton protein encoded by an essential gene. Mol. Cell Biol. 15, 4167-4174 (1995).
-
(1995)
Mol. Cell Biol.
, vol.15
, pp. 4167-4174
-
-
Mao, X.1
Schwer, B.2
Shuman, S.3
-
3
-
-
15044364768
-
Human mRNA cap methyltransferase: Alternative nuclear localization signal motifs ensure nuclear localization required for viability
-
DOI 10.1128/MCB.25.7.2644-2649.2005
-
Shafer, B., Chu, C. & Shatkin, A. J. Human mRNA cap methyltransferase: alternative nuclear localization signal motifs ensure nuclear localization required for viability. Mol. Cell Biol. 25, 2644-2649 (2005). (Pubitemid 40381628)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.7
, pp. 2644-2649
-
-
Shafer, B.1
Chu, C.2
Shatkin, A.J.3
-
4
-
-
79959324681
-
Cap and capbinding proteins in the control of gene expression
-
Wiley Interdiscip
-
Topisirovic, I., Svitkin, Y. V., Sonenberg, N. & Shatkin, A. J. Cap and capbinding proteins in the control of gene expression. Wiley Interdiscip. Rev. RNA 2, 277-298 (2011).
-
(2011)
Rev. RNA
, vol.2
, pp. 277-298
-
-
Topisirovic, I.1
Svitkin, Y.V.2
Sonenberg, N.3
Shatkin, A.J.4
-
6
-
-
0034567861
-
Viral and cellular mRNA capping: Past and prospects
-
Furuichi, Y. & Shatkin, A. J. Viral and cellular mRNA capping: past and prospects. Adv. Virus Res. 55, 135-184 (2000).
-
(2000)
Adv. Virus Res.
, vol.55
, pp. 135-184
-
-
Furuichi, Y.1
Shatkin, A.J.2
-
7
-
-
0042942531
-
Methylated, blocked 5 termini in HeLa cell mRNA
-
Furuichi, Y. et al. Methylated, blocked 5 termini in HeLa cell mRNA. Proc. Natl Acad. Sci. USA 72, 1904-1908 (1975).
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 1904-1908
-
-
Furuichi, Y.1
-
9
-
-
9344271506
-
Modified nucleotides at the 5′ end of human U2 snRNA are required for spliceosomal E-complex formation
-
DOI 10.1261/rna.7186504
-
Donmez, G., Hartmuth, K. & Luhrmann, R. Modified nucleotides at the 50 end of human U2 snRNA are required for spliceosomal E-complex formation. RNA 10, 1925-1933 (2004). (Pubitemid 39557830)
-
(2004)
RNA
, vol.10
, Issue.12
, pp. 1925-1933
-
-
Donmez, G.1
Hartmuth, K.2
Luhrmann, R.3
-
10
-
-
78751637122
-
Ribose 20-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5
-
Zust, R. et al. Ribose 20-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5. Nat. Immunol. 12, 137-143 (2011).
-
(2011)
Nat. Immunol.
, vol.12
, pp. 137-143
-
-
Zust, R.1
-
11
-
-
84864912887
-
The viral RNA capping machinery as a target for antiviral drugs
-
Ferron, F., Decroly, E., Selisko, B. & Canard, B. The viral RNA capping machinery as a target for antiviral drugs. Antiviral Res. 96, 21-31 (2012).
-
(2012)
Antiviral Res.
, vol.96
, pp. 21-31
-
-
Ferron, F.1
Decroly, E.2
Selisko, B.3
Canard, B.4
-
12
-
-
80052839150
-
The RNA capping machinery as an anti-infective target
-
Wiley Interdiscip
-
Issur, M., Picard-Jean, F. & Bisaillon, M. The RNA capping machinery as an anti-infective target. Wiley Interdiscip. Rev. RNA 2, 184-192 (2011).
-
(2011)
Rev. RNA
, vol.2
, pp. 184-192
-
-
Issur, M.1
Picard-Jean, F.2
Bisaillon, M.3
-
13
-
-
0031993338
-
Structural basis for sequence-nonspecific recognition of 5′-Capped mRNA by a cap-modifying enzyme
-
Hodel, A. E., Gershon, P. D. & Quiocho, F. A. Structural basis for sequencenonspecific recognition of 50-capped mRNA by a cap-modifying enzyme. Mol. Cell 1, 443-447 (1998). (Pubitemid 128378892)
-
(1998)
Molecular Cell
, vol.1
, Issue.3
, pp. 443-447
-
-
Hodel, A.E.1
Gershon, P.D.2
Quiocho, F.A.3
-
14
-
-
34548148632
-
Structural and functional analysis of methylation and 50-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5
-
Egloff, M. P. et al. Structural and functional analysis of methylation and 50-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5. J. Mol. Biol. 372, 723-736 (2007).
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 723-736
-
-
Egloff, M.P.1
-
15
-
-
57749204973
-
Recognition of RNA cap in the Wesselsbron virus NS5 methyltransferase domain: Implications for RNA-capping mechanisms in Flavivirus
-
Bollati, M. et al. Recognition of RNA cap in the Wesselsbron virus NS5 methyltransferase domain: implications for RNA-capping mechanisms in Flavivirus. J. Mol. Biol. 385, 140-152 (2009).
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 140-152
-
-
Bollati, M.1
-
16
-
-
77958508457
-
Characterization of hMTr1, a human cap1 20O-ribose methyltransferase
-
Belanger, F., Stepinski, J., Darzynkiewicz, E. & Pelletier, J. Characterization of hMTr1, a human cap1 20O-ribose methyltransferase. J. Biol. Chem. 285, 33037-33044 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 33037-33044
-
-
Belanger, F.1
Stepinski, J.2
Darzynkiewicz, E.3
Pelletier, J.4
-
17
-
-
79959383537
-
20-O-ribose methylation of cap2 in human: Function and evolution in a horizontally mobile family
-
Werner, M. et al. 20-O-ribose methylation of cap2 in human: function and evolution in a horizontally mobile family. Nucleic Acids Res. 39, 4756-4768 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4756-4768
-
-
Werner, M.1
-
18
-
-
0033302662
-
Comparison of protein structures reveals monophyletic origin of the AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation
-
Bujnicki, J. M. Comparison of protein structures reveals monophyletic origin of the AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation. In Silico Biol. 1, 175-182 (1999).
-
(1999)
Silico Biol.
, vol.1
, pp. 175-182
-
-
Bujnicki, J.M.1
-
19
-
-
34547604477
-
Crystal structure of the Murray Valley encephalitis virus NS5 methyltransferase domain in complex with cap analogues
-
DOI 10.1099/vir.0.82757-0
-
Assenberg, R. et al. Crystal structure of the Murray Valley encephalitis virus NS5 methyltransferase domain in complex with cap analogues. J. Gen. Virol. 88, 2228-2236 (2007). (Pubitemid 47194220)
-
(2007)
Journal of General Virology
, vol.88
, Issue.8
, pp. 2228-2236
-
-
Assenberg, R.1
Ren, J.2
Verma, A.3
Walter, T.S.4
Alderton, D.5
Hurrelbrink, R.J.6
Fuller, S.D.7
Bressanelli, S.8
Owens, R.J.9
Stuart, D.I.10
Grimes, J.M.11
-
20
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
DOI 10.1006/jmbi.1993.1489
-
Holm, L. & Sander, C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233, 123-138 (1993). (Pubitemid 23288916)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.1
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
21
-
-
4143116991
-
A structural basis for the inhibition of the NS5 dengue virus mRNA 2′-O-methyltransferase domain by ribavirin 5′-triphosphate
-
DOI 10.1074/jbc.M400460200
-
Benarroch, D. et al. A structural basis for the inhibition of the NS5 dengue virus mRNA 20-O-methyltransferase domain by ribavirin 50-triphosphate. J. Biol. Chem. 279, 35638-35643 (2004). (Pubitemid 39100566)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.34
, pp. 35638-35643
-
-
Benarroch, D.1
Egloff, M.-P.2
Mulard, L.3
Guerreiro, C.4
Romette, J.-L.5
Canard, B.6
-
22
-
-
54949097750
-
MetaMQAP: A metaserver for the quality assessment of protein models
-
Pawlowski, M., Gajda, M. J., Matlak, R. & Bujnicki, J. M. MetaMQAP: a metaserver for the quality assessment of protein models. BMC Bioinformatics 9, 403 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 403
-
-
Pawlowski, M.1
Gajda, M.J.2
Matlak, R.3
Bujnicki, J.M.4
-
23
-
-
0037013858
-
An RNA cap (nucleoside-2′-O-)-methyltransferase in the flavivirus RNA polymerase NS5: Crystal structure and functional characterization
-
DOI 10.1093/emboj/21.11.2757
-
Egloff, M. P., Benarroch, D., Selisko, B., Romette, J. L. & Canard, B. An RNA cap (nucleoside-20-O-)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization. EMBO J. 21, 2757-2768 (2002). (Pubitemid 34619391)
-
(2002)
EMBO Journal
, vol.21
, Issue.11
, pp. 2757-2768
-
-
Egloff, M.-P.1
Benarroch, D.2
Selisko, B.3
Romette, J.-L.4
Canard, B.5
-
24
-
-
0033594890
-
MRNA cap recognition: Dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains
-
DOI 10.1073/pnas.96.13.7149
-
Hu, G., Gershon, P. D., Hodel, A. E. & Quiocho, F. A. mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains. Proc. Natl Acad. Sci. USA 96, 7149-7154 (1999). (Pubitemid 29299630)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.13
, pp. 7149-7154
-
-
Hu, G.1
Gershon, P.D.2
Hodel, A.E.3
Quiocho, F.A.4
-
25
-
-
0019877430
-
Post-transcriptional modifications of mRNA. Purification and characterization of cap i and cap II RNA (nucleoside-20-)-methyltransferases from HeLa cells
-
Langberg, S. R. & Moss, B. Post-transcriptional modifications of mRNA. Purification and characterization of cap I and cap II RNA (nucleoside-20-)-methyltransferases from HeLa cells. J. Biol. Chem. 256, 10054-10060 (1981).
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 10054-10060
-
-
Langberg, S.R.1
Moss, B.2
-
26
-
-
0037413674
-
Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2′-O-methyltransferases
-
DOI 10.1016/S0378-1119(02)01097-1
-
Feder, M., Pas, J., Wyrwicz, L. S. & Bujnicki, J. M. Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 20-O- methyltransferases. Gene 302, 129-138 (2003). (Pubitemid 36078404)
-
(2003)
Gene
, vol.302
, Issue.1-2
, pp. 129-138
-
-
Feder, M.1
Pas, J.2
Wyrwicz, L.S.3
Bujnicki, J.M.4
-
27
-
-
34249779250
-
Structural bases for substrate recognition and activity in Meaban virus nucleoside-2′-O-methyltransferase
-
DOI 10.1110/ps.072758107
-
Mastrangelo, E. et al. Structural bases for substrate recognition and activity in Meaban virus nucleoside-20-O-methyltransferase. Protein Sci. 16, 1133-1145 (2007). (Pubitemid 46849221)
-
(2007)
Protein Science
, vol.16
, Issue.6
, pp. 1133-1145
-
-
Mastrangelo, E.1
Bollati, M.2
Milani, M.3
Selisko, B.4
Peyrane, F.5
Canard, B.6
Grard, G.7
De Lamballerie, X.8
Bolognesi, M.9
-
28
-
-
34247113349
-
Structure and function of flavivirus NS5 methyltransferase
-
DOI 10.1128/JVI.02704-06
-
Zhou, Y. et al. Structure and function of flavivirus NS5 methyltransferase. J. Virol. 81, 3891-3903 (2007). (Pubitemid 46586885)
-
(2007)
Journal of Virology
, vol.81
, Issue.8
, pp. 3891-3903
-
-
Zhou, Y.1
Ray, D.2
Zhao, Y.3
Dong, H.4
Ren, S.5
Li, Z.6
Guo, Y.7
Bernard, K.A.8
Shi, P.-Y.9
Li, H.10
-
29
-
-
0022325950
-
Resolution of phase ambiguity in macromolecular crystallography
-
Wang, B. C. Resolution of phase ambiguity in macromolecular crystallography. Methods Enzymol. 115, 90-112 (1985).
-
(1985)
Methods Enzymol.
, vol.115
, pp. 90-112
-
-
Wang, B.C.1
-
30
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D. Biol. Crystallogr. 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D. Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
31
-
-
34447508216
-
Phaser crystallographic software
-
DOI 10.1107/S0021889807021206, PII S0021889807021206
-
McCoy, A. J. et al. Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674 (2007). (Pubitemid 47080256)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
33
-
-
84861486823
-
XDSAPP: A graphical user interface for the convenient processing of diffraction data using XDS
-
Krug, M., Weiss, M. S., Heinemann, U. & Mueller, U. XDSAPP: a graphical user interface for the convenient processing of diffraction data using XDS. J. Appl. Cryst. 45, 568-572 (2012).
-
(2012)
J. Appl. Cryst.
, vol.45
, pp. 568-572
-
-
Krug, M.1
Weiss, M.S.2
Heinemann, U.3
Mueller, U.4
-
35
-
-
0033529738
-
Synthesis and reactions of nucleoside 50-diphosphate imidazolide. A nonenzymatic capping agent for 50-monophosphorylated oligoribonucleotides in aqueous solution
-
Sawai, H., Wakai, H. & Nakamura-Ozaki, A. Synthesis and reactions of nucleoside 50-diphosphate imidazolide. A nonenzymatic capping agent for 50-monophosphorylated oligoribonucleotides in aqueous solution. J. Org. Chem. 64, 5836-5840 (1999).
-
(1999)
J. Org. Chem.
, vol.64
, pp. 5836-5840
-
-
Sawai, H.1
Wakai, H.2
Nakamura-Ozaki, A.3
-
36
-
-
0043123216
-
GeneSilico protein structure prediction meta-server
-
DOI 10.1093/nar/gkg557
-
Kurowski, M. A. & Bujnicki, J. M. GeneSilico protein structure prediction metaserver. Nucleic Acids Res. 31, 3305-3307 (2003). (Pubitemid 37442145)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3305-3307
-
-
Kurowski, M.A.1
Bujnicki, J.M.2
-
37
-
-
0242362160
-
A 'FRankenstein's Monster' Approach to Comparative Modeling: Merging the Finest Fragments of Fold-Recognition Models and Iterative Model Refinement Aided by 3D Structure Evaluation
-
DOI 10.1002/prot.10545
-
Kosinski, J. et al. A 'FRankenstein's monster' approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation. Proteins 53(Suppl 6): 369-379 (2003). (Pubitemid 37352195)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.53
, Issue.SUPPL. 6
, pp. 369-379
-
-
Kosinski, J.1
Cymerman, I.A.2
Feder, M.3
Kurowski, M.A.4
Sasin, J.M.5
Bujnicki, J.M.6
-
38
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
DOI 10.1006/jmbi.1993.1626
-
Sali, A. & Blundell, T. L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234, 779-815 (1993). (Pubitemid 24007801)
-
(1993)
Journal of Molecular Biology
, vol.234
, Issue.3
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
39
-
-
1842484092
-
Protein fragment reconstruction using various modeling techniques
-
DOI 10.1023/B:JCAM.0000017486.83645.a0
-
Boniecki, M., Rotkiewicz, P., Skolnick, J. & Kolinski, A. Protein fragment reconstruction using various modeling techniques. J. Comput. Aided Mol. Des. 17, 725-738 (2003). (Pubitemid 38418285)
-
(2003)
Journal of Computer-Aided Molecular Design
, vol.17
, Issue.11
, pp. 725-738
-
-
Boniecki, M.1
Rotkiewicz, P.2
Skolnick, J.3
Kolinski, A.4
-
40
-
-
79959292152
-
ModeRNA: A tool for comparative modeling of RNA 3D structure
-
Rother, M., Rother, K., Puton, T. & Bujnicki, J. M. ModeRNA: a tool for comparative modeling of RNA 3D structure. Nucleic Acids Res. 39, 4007-4022 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4007-4022
-
-
Rother, M.1
Rother, K.2
Puton, T.3
Bujnicki, J.M.4
-
41
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl Acad. Sci. USA 98, 10037-10041 (2001). (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
42
-
-
23144448512
-
ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
-
DOI 10.1093/nar/gki370
-
Landau, M. et al. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33, W299-W302 (2005). (Pubitemid 44529930)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
Ben-Tal, N.7
-
43
-
-
34548263146
-
The 2′-O-ribose methyltransferase for cap 1 of spliced leader RNA and U1 small nuclear RNA in Trypanosoma brucei
-
DOI 10.1128/MCB.00647-07
-
Zamudio, J. R. et al. The 20-O-ribose methyltransferase for cap 1 of spliced leader RNA and U1 small nuclear RNA in Trypanosoma brucei. Mol. Cell Biol. 27, 6084-6092 (2007). (Pubitemid 47326696)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.17
, pp. 6084-6092
-
-
Zamudio, J.R.1
Mittra, B.2
Foldynova-Trantirkova, S.3
Zeiner, G.M.4
Lukes, J.5
Bujnicki, J.M.6
Sturm, N.R.7
Campbell, D.A.8
-
44
-
-
84861332327
-
MetaDisorder: A meta-server for the prediction of intrinsic disorder in proteins
-
Kozlowski, L. P. & Bujnicki, J. M. MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins. BMC Bioinformatics 13, 111 (2012).
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 111
-
-
Kozlowski, L.P.1
Bujnicki, J.M.2
|