Bacterial Community Dynamics in the Marine Sponge Rhopaloeides odorabile Under In Situ and Ex Situ Cultivation

Marine Biotechnology

Volumn 13, Issue 2, 2011, Pages 296-304

  Webster, Nicole S ^a   Cobb, Rose E ^a   Soo, Rochelle ^a   Anthony, Shelley L ^b,c   Battershill, Christopher N ^a   Whalan, Steve ^a   Evans Illidge, Elizabeth ^a  

^a AUSTRALIAN INSTITUTE OF MARINE SCIENCE   (Australia)

^b GREAT BARRIER REEF MARINE PARK AUTHORITY   (Australia)

^c JAMES COOK UNIVERSITY   (Australia)

Author keywords

Aquaria; Bacteria; Cultivation; Marine; Sponge; Symbiosis

Indexed keywords

AQUARIA; BACTERIAL COMMUNITY; DENATURING GRADIENT GEL ELECTROPHORESIS; ENVIRONMENTAL CONDITIONS; EX SITU; FLOWTHROUGH; HIGH GROWTH; IN-SITU; MARINE; MARINE SPONGE; MESOCOSM SYSTEMS; MESOCOSMS; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY COMPOSITION; NUTRIENT CONCENTRATIONS; PRINCIPAL COMPONENTS ANALYSIS; RARE SPECIES; SEAWATER CHEMISTRY; SPONGE; SYMBIOSIS;

BACTERIOLOGY; BIOLOGICAL MATERIALS; ECOLOGY; ELECTROPHORESIS; PRINCIPAL COMPONENT ANALYSIS; SEAWATER;

BACTERIA;

BACTERIAL DNA; SEA WATER;

AQUACULTURE; AQUARIUM; BACTERIUM; CULTIVATION; DRUG; ELECTROKINESIS; MARINE ECOSYSTEM; MESOCOSM; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PRINCIPAL COMPONENT ANALYSIS; SPONGE; SYMBIONT;

ANIMAL; AQUACULTURE; ARTICLE; BACTERIUM; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIAL CONSORTIUM; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; ORGANISMAL INTERACTION; PHYLOGENY; SPONGE (PORIFERA); SYMBIOSIS;

ANIMALS; AQUACULTURE; BACTERIA; BACTERIOLOGICAL TECHNIQUES; BASE SEQUENCE; BIODIVERSITY; DNA, BACTERIAL; MICROBIAL CONSORTIA; MICROBIAL INTERACTIONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; SEAWATER; SYMBIOSIS;

ACIDOBACTERIA; BACTERIA (MICROORGANISMS); CANDIDATUS PORIBACTERIA; CHLOROFLEXI; CHLOROFLEXI (CLASS); RHOPALOEIDES ODORABILE;

EID: 79955529941     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-010-9300-4     Document Type: Article

References (38)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Becerro MA, Thacker RW, Turon X, Uriz MJ, Paul VJ (2003) Biogeography of sponge chemical ecology: comparisons of tropical and temperate defenses. Oecologia 135: 91-101.
3. Duckworth AR, Battershill CN (2003) Sponge aquaculture for the production of biologically active metabolites: the influence of farming protocols and environment. Aquaculture 221: 311-329.
4. Duckworth AR, Wolff CWW (2007) Bath sponge aquaculture in Torres Strait, Australia: effect of explant size, farming method and the environment on culture success. Aquaculture 271: 188-195.
5. Duckworth AR, Wolff CWW, Evans-Illidge EA (2009) Farming bath sponges in tropical Australia. World Aquaculture Workshops 40: 20-22.
6. Evans-Illidge E, Webster NS, Duckworth A, Louden D, Whalan S, Bannister R, Brinkman R, Wolff C, De Nys R, Battershill C (2006) Palm Island aquaculture science. Australian Institute of Marine Science, Townsville.
7. Felsenstein J (1993) PHYLIP (Phylogenetic Inference Package), Version 3. 5c. Department of Genetics, University of Washington, Seattle.
8. Ferris MJ, Muyzer G, Ward DM (1996) Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl Environ Microbiol 62: 340-346.
9. Friedrich AB, Fischer I, Proksch P, Hacker J, Hentschel U (2001) Temporal variation of the microbial community associated with the Mediterranean sponge Aplysina aerophoba. FEMS Microbiol Ecol 38: 105-113.
10. Furnas MJ, Mitchell AW, Skuza M (1995) Nitrogen and phosphorus budgets for the central Great Barrier Reef shelf. Great Barrier Reef Marine Park Authority, Townsville.
11. Gerce B, Schwartz T, Voigt M, Rühle S, Kirchen S, Putz A, Proksch P, Obst U, Syldatk C, Hausmann R (2009) Morphological, bacterial, and secondary metabolite changes of Aplysina aerophoba upon long-term maintenance under artificial conditions. Microb Ecol 58: 865-878.
12. Hentschel U, Hopke J, Horn M, Friedrich AB, Wagner M, Hacker J, Moore BS (2002) Molecular evidence for a uniform microbial community in sponges from different oceans. Appl Environ Microbiol 68: 4431-4440.
13. Hoffmann F, Rapp HT, Reitner J (2006) Monitoring microbial community composition by fluorescence in situ hybridization during cultivation of the marine cold-water sponge Geodia barretti. Mar Biotechnol 8: 373-379.
14. Isaacs LT, Kan J, Nguyen L, Videau P, Anderson MA, Wright TL, Hill RT (2009) Comparison of the bacterial communities of wild and captive sponge Clathria prolifera from the Chesapeake Bay. Mar Biotechnol 11: 758-770.
15. Louden D, Whalan S, Evans-Illidge E, Wolff C, De Nys R (2007) An assessment of the aquaculture potential of the tropical sponges Rhopaloeides odorabile and Coscinoderma n. sp. Aquaculture 270: 57-67.
16. Ludwig W, Strunk O, Klugbauer S, Klugbauer N, Weizenegger M, Neumaier J, Bachleitner M, Schleifer K-H (1998) Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19: 554-568.
17. Mohamed NM, Enticknap JJ, Lohr JE, Mcintosh SM, Hill RT (2008a) Changes in bacterial communities of the marine sponge Mycale laxissima on transfer into aquaculture. Appl Environ Microbiol 74: 1209-1222.
18. Mohamed NM, Rao V, Hamann MT, Kelly M, Hill RT (2008b) Monitoring bacterial diversity of the marine sponge Ircinia strobilina upon transfer into aquaculture. Appl Environ Microbiol 74: 4133-4143.
19. Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
20. Newbold RW, Jensen PR, Fenical W, Pawlik JR (1999) Antimicrobial activity of Caribbean sponge extracts. Aquat Microb Ecol 19: 279-284.
21. Newman DJ, Cragg GM (2006) Natural products from marine invertebrates and microbes as modulators of antitumor targets. Curr Drug Targets 7: 279-304.
22. Newman DJ, Cragg GM (2007) Natural products as sources of new drugs over the last 25 years. J Nat Prod 70: 461-477.
23. Osinga R, Tramper J, Wijffels RH (1998) Cultivation of marine sponges for metabolite production: applications for biotechnology? Trends Biotechnol 16: 130-134.
24. Pawlik JR, Chanas B, Toonen RJ, Fenical W (1995) Defenses of Caribbean sponges against predatory reef fish. I. Chemical deterrency. Mar Ecol Prog Ser 127: 183-194.
25. Pronzato R (1999) Sponge-fishing, disease and farming in the Mediterranean Sea. Aquat Conserv 9: 485-493.
26. Taylor MW, Schupp PJ, Dahllof I, Kjelleberg S, Steinberg PD (2004) Host specificity in marine sponge-associated bacteria, and potential implications for marine microbial diversity. Environ Microbiol 6: 121-130.
27. Thacker RW, Becerro MA, Lumbang WA, Paul VJ (1998) Allelopathic interactions between sponges on a tropical reef. Ecology 79: 1740-1750.
28. Thakur NL, Hentschel U, Krasko A, Pabel CT, Anil AC, MüLler WEG (2003) Antibacterial activity of the sponge Suberites domuncula and its primmorphs: potential basis for epibacterial chemical defense. Aquat Microb Ecol 31: 77-83.
29. Thomas S, Anthony SL (2008) Technical operations and water quality in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia. In: Leewis R, Janse M (eds) Advances in coral husbandry in public aquaria. Burgers Zoo, Arnhem.
30. Thoms C, Horn M, Wagner M, Hentschel U, Proksch P (2003) Monitoring microbial diversity and natural products profiles of the sponge Aplysina cavernicola following transplantation. Mar Biol 142: 685-692.
31. Webster NS, Hill RT (2001) The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an alpha proteobacterium. Mar Biol 138: 843-851.
32. Webster NS, Watts JE, Hill RT (2001a) Detection and phylogenetic analysis of novel crenarchaeote and euryarchaeote 16S ribosomal RNA gene sequences from a Great Barrier Reef sponge. Mar Biotechnol 3: 600-608.
33. Webster NS, Webb RI, Ridd MJ, Hill RT, Negri AP (2001b) The effects of copper on the microbial community of a coral reef sponge. Environ Microbiol 3: 19-31.
34. Webster NS, Wilson KJ, Blackall LL, Hill RT (2001c) Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile. Appl Environ Microbiol 67: 434-444.
35. Webster NS, Negri AP, Webb RI, Hill RT (2002) A spongin-boring alpha proteobacterium is the etiological agent of disease in the Great Barrier Reef sponge, Rhopaloeides odorabile. Mar Ecol Prog Ser 232: 305-309.
36. Webster NS, Negri AP, Munro MM, Battershill CN (2004) Diverse microbial communities inhabit Antarctic sponges. Environ Microbiol 6: 288-300.
37. Webster NS, Cobb RE, Negri AP (2008) Temperature thresholds for bacterial symbiosis with a sponge. ISME J 2: 830-842.
38. Webster NS, Taylor MW, Benham F, Lücker S, Rattei T, Whalan S, Horn M, Wagner M (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environ Microbiol. doi: 10. 1111/j. 1462-2920. 2009. 02065. x.