메뉴 건너뛰기




Volumn 42, Issue D1, 2014, Pages 11847-

Erratum: SCOP2 prototype: a new approach to protein structure mining (Nucleic Acids Research (2014) 42: D1 (D310-D314) DOI: 10.1093/nar/gkt1242);SCOP2 prototype: A new approach to protein structure mining

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; COMPUTER INTERFACE; DATA MINING; INTERNET; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN STRUCTURE; STRUCTURAL CLASSIFICATION OF PROTEINS 2 DATABASE; WEB BROWSER; PROTEIN TERTIARY STRUCTURE; COMPLEX FORMATION; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SEQUENCE ANALYSIS; STRUCTURAL CLASSIFICATION OF PROTEIN 2 DATABASE;

EID: 84891783706     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku841     Document Type: Erratum
Times cited : (241)

References (32)
  • 1
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 2
    • 0017309766 scopus 로고
    • Structural patterns in globular proteins
    • Levitt, M. and Chothia, C. (1976) Structural patterns in globular proteins. Nature, 261, 552-558.
    • (1976) Nature , vol.261 , pp. 552-558
    • Levitt, M.1    Chothia, C.2
  • 3
    • 0019443447 scopus 로고
    • The anatomy and taxonomy of protein structure
    • Richardson, J.S. (1981) The anatomy and taxonomy of protein structure. Adv. Protein Chem., 34, 167-339.
    • (1981) Adv. Protein Chem. , vol.34 , pp. 167-339
    • Richardson, J.S.1
  • 4
    • 0021118508 scopus 로고
    • Principles that determine the structure of proteins
    • Chothia, C. (1984) Principles that determine the structure of proteins. Annu. Rev. Biochem., 53, 537-572.
    • (1984) Annu. Rev. Biochem. , vol.53 , pp. 537-572
    • Chothia, C.1
  • 5
    • 0022292725 scopus 로고
    • Domains in proteins: Definitions, location, and structural principles
    • Janin, J. and Chothia, C. (1985) Domains in proteins: definitions, location, and structural principles. Methods Enzymol., 115, 420-430.
    • (1985) Methods Enzymol. , vol.115 , pp. 420-430
    • Janin, J.1    Chothia, C.2
  • 6
    • 0019053499 scopus 로고
    • Similarities of protein topologies: Evolutionary divergence, functional convergence or principles of folding?
    • Ptitsyn, O.B. and Finkelstein, A.V. (1980) Similarities of protein topologies: evolutionary divergence, functional convergence or principles of folding? Q. Rev. Biophys., 13, 339-386.
    • (1980) Q. Rev. Biophys. , vol.13 , pp. 339-386
    • Ptitsyn, O.B.1    Finkelstein, A.V.2
  • 7
    • 0028319318 scopus 로고
    • Classification of protein folds
    • Orengo, C. (1994) Classification of protein folds. Curr. Opin. Struc. Biol., 4, 429-440.
    • (1994) Curr. Opin. Struc. Biol. , vol.4 , pp. 429-440
    • Orengo, C.1
  • 8
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138.
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 9
    • 0027293521 scopus 로고
    • Molecular recognition in protein families: A database of aligned three-dimensional structures of related proteins
    • Overington, J.P., Zhu, Z.Y., Sali, A., Johnson, M.S., Sowdhamini, R., Louie, G.V. and Blundell, T.L. (1993) Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins. Biochem. Soc. Trans., 21(Pt 3), 597-604.
    • (1993) Biochem. Soc. Trans. , vol.21 , Issue.PART 3 , pp. 597-604
    • Overington, J.P.1    Zhu, Z.Y.2    Sali, A.3    Johnson, M.S.4    Sowdhamini, R.5    Louie, G.V.6    Blundell, T.L.7
  • 13
    • 0027162768 scopus 로고
    • Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors
    • Murzin, A.G. (1993) Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors. J. Mol. Biol., 230, 689-694.
    • (1993) J. Mol. Biol. , vol.230 , pp. 689-694
    • Murzin, A.G.1
  • 14
    • 14644444463 scopus 로고    scopus 로고
    • Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions
    • Moroz, O.V., Murzin, A.G., Makarova, K.S., Koonin, E.V., Wilson, K.S. and Galperin, M.Y. (2005) Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions. J. Mol. Biol., 347, 243-255.
    • (2005) J. Mol. Biol. , vol.347 , pp. 243-255
    • Moroz, O.V.1    Murzin, A.G.2    Makarova, K.S.3    Koonin, E.V.4    Wilson, K.S.5    Galperin, M.Y.6
  • 17
    • 33644876493 scopus 로고    scopus 로고
    • SCOPPI: A structural classification of protein-protein interfaces
    • Winter, C., Henschel, A., Kim, W.K. and Schroeder, M. (2006) SCOPPI: a structural classification of protein-protein interfaces. Nucleic Acids Res., 34, D310-D314.
    • (2006) Nucleic Acids Res. , vol.34
    • Winter, C.1    Henschel, A.2    Kim, W.K.3    Schroeder, M.4
  • 19
    • 13244264810 scopus 로고    scopus 로고
    • SCOPmap: Automated assignment of protein structures to evolutionary superfamilies
    • Cheek, S., Qi, Y., Krishna, S.S., Kinch, L.N. and Grishin, N.V. (2004) SCOPmap: automated assignment of protein structures to evolutionary superfamilies. BMC Bioinformatics, 5, 197.
    • (2004) BMC Bioinformatics , vol.5 , pp. 197
    • Cheek, S.1    Qi, Y.2    Krishna, S.S.3    Kinch, L.N.4    Grishin, N.V.5
  • 20
    • 33847249065 scopus 로고    scopus 로고
    • QSCOP-SCOP quantified by structural relationships
    • Suhrer, S.J., Wiederstein, M. and Sippl, M.J. (2007) QSCOP-SCOP quantified by structural relationships. Bioinformatics, 23, 513-514.
    • (2007) Bioinformatics , vol.23 , pp. 513-514
    • Suhrer, S.J.1    Wiederstein, M.2    Sippl, M.J.3
  • 23
    • 0035783063 scopus 로고    scopus 로고
    • Fold change in evolution of protein structures
    • Grishin, N.V. (2001) Fold change in evolution of protein structures. J. Struct. Biol., 134, 167-185.
    • (2001) J. Struct. Biol. , vol.134 , pp. 167-185
    • Grishin, N.V.1
  • 24
    • 0035783055 scopus 로고    scopus 로고
    • On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?
    • Lupas, A.N., Ponting, C.P. and Russell, R.B. (2001) On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? J. Struct. Biol., 134, 191-203.
    • (2001) J. Struct. Biol. , vol.134 , pp. 191-203
    • Lupas, A.N.1    Ponting, C.P.2    Russell, R.B.3
  • 25
    • 40649108103 scopus 로고    scopus 로고
    • Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds
    • Roessler, C.G., Hall, B.M., Anderson, W.J., Ingram, W.M., Roberts, S.A., Montfort, W.R. and Cordes, M.H. (2008) Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds. Proc. Natl Acad. Sci. USA, 105, 2343-2348.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 2343-2348
    • Roessler, C.G.1    Hall, B.M.2    Anderson, W.J.3    Ingram, W.M.4    Roberts, S.A.5    Montfort, W.R.6    Cordes, M.H.7
  • 26
    • 33744783371 scopus 로고    scopus 로고
    • Evolution of protein fold in the presence of functional constraints
    • Andreeva, A. and Murzin, A.G. (2006) Evolution of protein fold in the presence of functional constraints. Curr. Opin. Struct. Biol., 16, 399-408.
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 399-408
    • Andreeva, A.1    Murzin, A.G.2
  • 27
    • 77958056909 scopus 로고    scopus 로고
    • Structural classification of proteins and structural genomics: New insights into protein folding and evolution
    • Andreeva, A. and Murzin, A.G. (2010) Structural classification of proteins and structural genomics: new insights into protein folding and evolution. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 66, 1190-1197.
    • (2010) Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. , vol.66 , pp. 1190-1197
    • Andreeva, A.1    Murzin, A.G.2
  • 28
    • 0032104477 scopus 로고    scopus 로고
    • How far divergent evolution goes in proteins
    • Murzin, A.G. (1998) How far divergent evolution goes in proteins. Curr. Opin. Struct. Biol., 8, 380-387.
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 380-387
    • Murzin, A.G.1
  • 29
    • 84858129259 scopus 로고    scopus 로고
    • Classification of proteins: Available structural space for molecular modeling
    • Andreeva, A. (2012) Classification of proteins: available structural space for molecular modeling. Methods Mol. Biol., 857, 1-31.
    • (2012) Methods Mol. Biol. , vol.857 , pp. 1-31
    • Andreeva, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.