-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0037304408
-
Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins
-
Anantharaman, V., Aravind, L. and Koonin, E.V. (2003) Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins. Curr. Opin. Chem. Biol., 7, 12-20.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 12-20
-
-
Anantharaman, V.1
Aravind, L.2
Koonin, E.V.3
-
4
-
-
0033963089
-
The ENZYME database in 2000
-
Bairoch, A. (2000) The ENZYME database in 2000. Nucleic Acids Res., 28, 304-305.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 304-305
-
-
Bairoch, A.1
-
5
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
6
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gasteiger, E., Martin, M.J., Michoud, K., O'Donovan, C., Phan, I., Pilbout, S. and Schneider, M. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
7
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer, P., Bushnell, D.A. and Kornberg, R.D. (2001) Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science, 292, 1863-1876.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
8
-
-
0029006062
-
The multiplicity of domains in proteins
-
Doolittle, R.F. (1995) The multiplicity of domains in proteins. Annu. Rev. Biochem., 64, 287-314.
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 287-314
-
-
Doolittle, R.F.1
-
9
-
-
0031666414
-
Analogous enzymes: Independent inventions in enzyme evolution
-
Galperin, M.Y., Walker, D.R. and Koonin, E.V. (1998) Analogous enzymes: independent inventions in enzyme evolution. Genome Res., 8, 779-790.
-
(1998)
Genome Res.
, vol.8
, pp. 779-790
-
-
Galperin, M.Y.1
Walker, D.R.2
Koonin, E.V.3
-
10
-
-
0036721254
-
Protein domain identification and improved sequence similarity searching using PSI-BLAST
-
George, R.A. and Heringa, J. (2002) Protein domain identification and improved sequence similarity searching using PSI-BLAST. Proteins, 48, 672-681.
-
(2002)
Proteins
, vol.48
, pp. 672-681
-
-
George, R.A.1
Heringa, J.2
-
11
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
Gribskov, M., McLachlan, A.D. and Eisenberg, D. (1987) Profile analysis: detection of distantly related proteins. Proc. Natl Acad. Sci. USA, 84, 4355-4358.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, A.D.2
Eisenberg, D.3
-
12
-
-
0033597176
-
The relationship between protein structure and function: A comprehensive survey with application to the yeast genome
-
Hegyi, H. and Gerstein, M. (1999) The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. J. Mol. Biol., 288, 147-164.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 147-164
-
-
Hegyi, H.1
Gerstein, M.2
-
13
-
-
0035753660
-
Quoderat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences
-
RESEARCH0051.1-RESE RCH0051.11
-
Iyer, L.M., Aravind, L., Bork, P., Hofmann, K., Mushegian, A.R., Zhulin, I.B. and Koonin, E.V. (2001) Quoderat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences. Genome Biol., 2, RESEARCH0051.1-RESE RCH0051.11.
-
(2001)
Genome Biol.
, vol.2
-
-
Iyer, L.M.1
Aravind, L.2
Bork, P.3
Hofmann, K.4
Mushegian, A.R.5
Zhulin, I.B.6
Koonin, E.V.7
-
15
-
-
0033537993
-
GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
-
Jones, D.T. (1999) GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. J. Mol. Biol., 287, 797-815.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 797-815
-
-
Jones, D.T.1
-
16
-
-
0028158905
-
Improving the sensitivity of the sequence profile method
-
Luthy, R., Xenarios, I. and Bucher, P. (1994) Improving the sensitivity of the sequence profile method. Protein Sci., 3, 139-146.
-
(1994)
Protein Sci.
, vol.3
, pp. 139-146
-
-
Luthy, R.1
Xenarios, I.2
Bucher, P.3
-
17
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
18
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano, N., Orengo, C.A. and Thornton, J.M. (2002) One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J. Mol. Biol., 321, 741-765.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
19
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) CATH-a hierarchic classification of protein domain structures. Structure, 5, 1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
20
-
-
0345864027
-
The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
-
Porter, C.T., Bartlett, G.J. and Thornton, J.M. (2004) The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res., 32, D129-D133.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Porter, C.T.1
Bartlett, G.J.2
Thornton, J.M.3
-
21
-
-
0036308741
-
Enzyme function less conserved than anticipated
-
Rost, B. (2002) Enzyme function less conserved than anticipated. J. Mol. Biol., 318, 595-608.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 595-608
-
-
Rost, B.1
-
22
-
-
0242551544
-
Sequence, structure and energetic determinants of phosphopeptide selectivity of SH2 domains
-
Sheinerman, F.B., Al-Lazikani, B. and Honig, B. (2003) Sequence, structure and energetic determinants of phosphopeptide selectivity of SH2 domains. J. Mol. Biol., 334, 823-841.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 823-841
-
-
Sheinerman, F.B.1
Al-Lazikani, B.2
Honig, B.3
-
23
-
-
0037098149
-
Application of high-throughput computing in bioinformatics
-
Swindells, M., Rae, M., Pearce, M., Moodie, S., Miller, R. and Leach, P. (2002) Application of high-throughput computing in bioinformatics. Philos. Transact. Ser. A Math. Phys. Eng. Sci., 360, 1179-1189.
-
(2002)
Philos. Transact. Ser. A Math. Phys. Eng. Sci.
, vol.360
, pp. 1179-1189
-
-
Swindells, M.1
Rae, M.2
Pearce, M.3
Moodie, S.4
Miller, R.5
Leach, P.6
-
24
-
-
0033757840
-
From structure to function: Approaches and limitations
-
Thornton, J.M., Todd, A.E., Milburn, D., Borkakoti, N. and Orengo, C.A. (2000) From structure to function: approaches and limitations. Nat. Struct. Biol., 7 (Suppl.), 991-994.
-
(2000)
Nat. Struct. Biol.
, vol.7
, Issue.SUPPL.
, pp. 991-994
-
-
Thornton, J.M.1
Todd, A.E.2
Milburn, D.3
Borkakoti, N.4
Orengo, C.A.5
-
25
-
-
0142106373
-
How well is enzyme function conserved as a function of pairwise sequence identity?
-
Tian, W. and Skolnick, J. (2003) How well is enzyme function conserved as a function of pairwise sequence identity? J. Mol. Biol., 333, 863-882.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 863-882
-
-
Tian, W.1
Skolnick, J.2
-
26
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
Todd, A.E., Orengo, C.A. and Thornton, J.M. (2001) Evolution of function in protein superfamilies, from a structural perspective. J. Mol. Biol., 307, 1113-1143.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
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