메뉴 건너뛰기




Volumn 1839, Issue 1, 2014, Pages 50-61

Cohesin and CTCF differentially regulate spatiotemporal runx1 expression during zebrafish development

Author keywords

Cohesin; CTCF; Hematopoiesis; Rad21; Runx1; Zebrafish

Indexed keywords

COHESIN; RNA POLYMERASE II; TRANSCRIPTION FACTOR CTCF; TRANSCRIPTION FACTOR RUNX1;

EID: 84891480203     PISSN: 18749399     EISSN: 18764320     Source Type: Journal    
DOI: 10.1016/j.bbagrm.2013.11.007     Document Type: Article
Times cited : (32)

References (60)
  • 1
    • 0029918597 scopus 로고    scopus 로고
    • Disruption of the Cbfa2 gene causes necrosis and hemorrhaging in the central nervous system and blocks definitive hematopoiesis
    • Wang Q., Stacy T., Binder M., Marin-Padilla M., Sharpe A.H., Speck N.A. Disruption of the Cbfa2 gene causes necrosis and hemorrhaging in the central nervous system and blocks definitive hematopoiesis. Proc. Natl. Acad. Sci. U. S. A. 1996, 93:3444-3449.
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 3444-3449
    • Wang, Q.1    Stacy, T.2    Binder, M.3    Marin-Padilla, M.4    Sharpe, A.H.5    Speck, N.A.6
  • 2
    • 0030061554 scopus 로고    scopus 로고
    • AML1, the target of multiple chromosomal translocations in human leukemia, is essential for normal fetal liver hematopoiesis
    • Okuda T., van Deursen J., Hiebert S.W., Grosveld G., Downing J.R. AML1, the target of multiple chromosomal translocations in human leukemia, is essential for normal fetal liver hematopoiesis. Cell 1996, 84:321-330.
    • (1996) Cell , vol.84 , pp. 321-330
    • Okuda, T.1    van Deursen, J.2    Hiebert, S.W.3    Grosveld, G.4    Downing, J.R.5
  • 4
    • 2342451948 scopus 로고    scopus 로고
    • AML-1 is required for megakaryocytic maturation and lymphocytic differentiation, but not for maintenance of hematopoietic stem cells in adult hematopoiesis
    • Ichikawa M., Asai T., Saito T., Seo S., Yamazaki I., Yamagata T., Mitani K., Chiba S., Ogawa S., Kurokawa M., Hirai H. AML-1 is required for megakaryocytic maturation and lymphocytic differentiation, but not for maintenance of hematopoietic stem cells in adult hematopoiesis. Nat. Med. 2004, 10:299-304.
    • (2004) Nat. Med. , vol.10 , pp. 299-304
    • Ichikawa, M.1    Asai, T.2    Saito, T.3    Seo, S.4    Yamazaki, I.5    Yamagata, T.6    Mitani, K.7    Chiba, S.8    Ogawa, S.9    Kurokawa, M.10    Hirai, H.11
  • 5
    • 60149100010 scopus 로고    scopus 로고
    • Runx1 is required for the endothelial to haematopoietic cell transition but not thereafter
    • Chen M.J., Yokomizo T., Zeigler B.M., Dzierzak E., Speck N.A. Runx1 is required for the endothelial to haematopoietic cell transition but not thereafter. Nature 2009, 457:887-891.
    • (2009) Nature , vol.457 , pp. 887-891
    • Chen, M.J.1    Yokomizo, T.2    Zeigler, B.M.3    Dzierzak, E.4    Speck, N.A.5
  • 6
    • 77954839231 scopus 로고    scopus 로고
    • Hematopoietic stem cell emergence in the conceptus and the role of Runx1
    • Swiers G., de Bruijn M., Speck N.A. Hematopoietic stem cell emergence in the conceptus and the role of Runx1. Int. J. Dev. Biol. 2010, 54:1151-1163.
    • (2010) Int. J. Dev. Biol. , vol.54 , pp. 1151-1163
    • Swiers, G.1    de Bruijn, M.2    Speck, N.A.3
  • 7
    • 77951078473 scopus 로고    scopus 로고
    • Nonredundant roles for Runx1 alternative promoters reflect their activity at discrete stages of developmental hematopoiesis
    • Bee T., Swiers G., Muroi S., Pozner A., Nottingham W., Santos A.C., Li P.S., Taniuchi I., de Bruijn M.F. Nonredundant roles for Runx1 alternative promoters reflect their activity at discrete stages of developmental hematopoiesis. Blood 2010, 115:3042-3050.
    • (2010) Blood , vol.115 , pp. 3042-3050
    • Bee, T.1    Swiers, G.2    Muroi, S.3    Pozner, A.4    Nottingham, W.5    Santos, A.C.6    Li, P.S.7    Taniuchi, I.8    de Bruijn, M.F.9
  • 8
    • 51249096975 scopus 로고    scopus 로고
    • Runx transcription factors in neuronal development
    • Inoue K., Shiga T., Ito Y. Runx transcription factors in neuronal development. Neural Dev. 2008, 3:20.
    • (2008) Neural Dev. , vol.3 , pp. 20
    • Inoue, K.1    Shiga, T.2    Ito, Y.3
  • 9
    • 31444439049 scopus 로고    scopus 로고
    • A role for Runx transcription factor signaling in dorsal root ganglion sensory neuron diversification
    • Kramer I., Sigrist M., de Nooij J.C., Taniuchi I., Jessell T.M., Arber S. A role for Runx transcription factor signaling in dorsal root ganglion sensory neuron diversification. Neuron 2006, 49:379-393.
    • (2006) Neuron , vol.49 , pp. 379-393
    • Kramer, I.1    Sigrist, M.2    de Nooij, J.C.3    Taniuchi, I.4    Jessell, T.M.5    Arber, S.6
  • 10
    • 3142780543 scopus 로고    scopus 로고
    • AML1/Runx1 is important for the development of hindbrain cholinergic branchiovisceral motor neurons and selected cranial sensory neurons
    • Theriault F.M., Roy P., Stifani S. AML1/Runx1 is important for the development of hindbrain cholinergic branchiovisceral motor neurons and selected cranial sensory neurons. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:10343-10348.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 10343-10348
    • Theriault, F.M.1    Roy, P.2    Stifani, S.3
  • 11
    • 2942547444 scopus 로고    scopus 로고
    • Core-binding factors in hematopoiesis and immune function
    • de Bruijn M.F., Speck N.A. Core-binding factors in hematopoiesis and immune function. Oncogene 2004, 23:4238-4248.
    • (2004) Oncogene , vol.23 , pp. 4238-4248
    • de Bruijn, M.F.1    Speck, N.A.2
  • 12
    • 2942512933 scopus 로고    scopus 로고
    • Structure and regulated expression of mammalian RUNX genes
    • Levanon D., Groner Y. Structure and regulated expression of mammalian RUNX genes. Oncogene 2004, 23:4211-4219.
    • (2004) Oncogene , vol.23 , pp. 4211-4219
    • Levanon, D.1    Groner, Y.2
  • 13
    • 2942622388 scopus 로고    scopus 로고
    • The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms
    • Rennert J., Coffman J.A., Mushegian A.R., Robertson A.J. The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms. BMC Evol. Biol. 2003, 3:4.
    • (2003) BMC Evol. Biol. , vol.3 , pp. 4
    • Rennert, J.1    Coffman, J.A.2    Mushegian, A.R.3    Robertson, A.J.4
  • 15
    • 0034810126 scopus 로고    scopus 로고
    • Identification of an alternatively spliced form of the mouse AML1/RUNX1 gene transcript AML1c and its expression in early hematopoietic development
    • Fujita Y., Nishimura M., Taniwaki M., Abe T., Okuda T. Identification of an alternatively spliced form of the mouse AML1/RUNX1 gene transcript AML1c and its expression in early hematopoietic development. Biochem. Biophys. Res. Commun. 2001, 281:1248-1255.
    • (2001) Biochem. Biophys. Res. Commun. , vol.281 , pp. 1248-1255
    • Fujita, Y.1    Nishimura, M.2    Taniwaki, M.3    Abe, T.4    Okuda, T.5
  • 16
    • 0034021379 scopus 로고    scopus 로고
    • Transcription-coupled translation control of AML1/RUNX1 is mediated by cap- and internal ribosome entry site-dependent mechanisms
    • Pozner A., Goldenberg D., Negreanu V., Le S.Y., Elroy-Stein O., Levanon D., Groner Y. Transcription-coupled translation control of AML1/RUNX1 is mediated by cap- and internal ribosome entry site-dependent mechanisms. Mol. Cell. Biol. 2000, 20:2297-2307.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 2297-2307
    • Pozner, A.1    Goldenberg, D.2    Negreanu, V.3    Le, S.Y.4    Elroy-Stein, O.5    Levanon, D.6    Groner, Y.7
  • 19
    • 34547842483 scopus 로고    scopus 로고
    • Developmentally regulated promoter-switch transcriptionally controls Runx1 function during embryonic hematopoiesis
    • Pozner A., Lotem J., Xiao C., Goldenberg D., Brenner O., Negreanu V., Levanon D., Groner Y. Developmentally regulated promoter-switch transcriptionally controls Runx1 function during embryonic hematopoiesis. BMC Dev. Biol 2007, 7:84.
    • (2007) BMC Dev. Biol , vol.7 , pp. 84
    • Pozner, A.1    Lotem, J.2    Xiao, C.3    Goldenberg, D.4    Brenner, O.5    Negreanu, V.6    Levanon, D.7    Groner, Y.8
  • 20
    • 77951459994 scopus 로고    scopus 로고
    • Runx1 isoforms show differential expression patterns during hematopoietic development but have similar functional effects in adult hematopoietic stem cells
    • Challen G.A., Goodell M.A. Runx1 isoforms show differential expression patterns during hematopoietic development but have similar functional effects in adult hematopoietic stem cells. Exp. Hematol. 2010, 38:403-416.
    • (2010) Exp. Hematol. , vol.38 , pp. 403-416
    • Challen, G.A.1    Goodell, M.A.2
  • 22
    • 27244435347 scopus 로고    scopus 로고
    • Runx1/AML1 in normal and abnormal hematopoiesis
    • Yamagata T., Maki K., Mitani K. Runx1/AML1 in normal and abnormal hematopoiesis. Int. J. Hematol. 2005, 82:1-8.
    • (2005) Int. J. Hematol. , vol.82 , pp. 1-8
    • Yamagata, T.1    Maki, K.2    Mitani, K.3
  • 23
    • 0036337052 scopus 로고    scopus 로고
    • Runx1 is required for zebrafish blood and vessel development and expression of a human RUNX1-CBF2T1 transgene advances a model for studies of leukemogenesis
    • Kalev-Zylinska M.L., Horsfield J.A., Flores M.V., Postlethwait J.H., Vitas M.R., Baas A.M., Crosier P.S., Crosier K.E. Runx1 is required for zebrafish blood and vessel development and expression of a human RUNX1-CBF2T1 transgene advances a model for studies of leukemogenesis. Development 2002, 129:2015-2030.
    • (2002) Development , vol.129 , pp. 2015-2030
    • Kalev-Zylinska, M.L.1    Horsfield, J.A.2    Flores, M.V.3    Postlethwait, J.H.4    Vitas, M.R.5    Baas, A.M.6    Crosier, P.S.7    Crosier, K.E.8
  • 25
    • 79960343959 scopus 로고    scopus 로고
    • Transcriptional regulation and spatial organisation of the human AML1/RUNX1 gene
    • Markova E.N., Kantidze O.L., Razin S.V. Transcriptional regulation and spatial organisation of the human AML1/RUNX1 gene. J. Cell. Biochem. 2011, 112:1997-2005.
    • (2011) J. Cell. Biochem. , vol.112 , pp. 1997-2005
    • Markova, E.N.1    Kantidze, O.L.2    Razin, S.V.3
  • 26
    • 67149099806 scopus 로고    scopus 로고
    • The mouse Runx1 +23 hematopoietic stem cell enhancer confers hematopoietic specificity to both Runx1 promoters
    • Bee T., Ashley E.L., Bickley S.R., Jarratt A., Li P.S., Sloane-Stanley J., Gottgens B., de Bruijn M.F. The mouse Runx1 +23 hematopoietic stem cell enhancer confers hematopoietic specificity to both Runx1 promoters. Blood 2009, 113:5121-5124.
    • (2009) Blood , vol.113 , pp. 5121-5124
    • Bee, T.1    Ashley, E.L.2    Bickley, S.R.3    Jarratt, A.4    Li, P.S.5    Sloane-Stanley, J.6    Gottgens, B.7    de Bruijn, M.F.8
  • 27
    • 78149290282 scopus 로고    scopus 로고
    • A Runx1 intronic enhancer marks hemogenic endothelial cells and hematopoietic stem cells
    • Ng C.E., Yokomizo T., Yamashita N., Cirovic B., Jin H., Wen Z., Ito Y., Osato M. A Runx1 intronic enhancer marks hemogenic endothelial cells and hematopoietic stem cells. Stem Cells 2010, 28:1869-1881.
    • (2010) Stem Cells , vol.28 , pp. 1869-1881
    • Ng, C.E.1    Yokomizo, T.2    Yamashita, N.3    Cirovic, B.4    Jin, H.5    Wen, Z.6    Ito, Y.7    Osato, M.8
  • 31
    • 84879208137 scopus 로고    scopus 로고
    • Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans
    • Dorsett D., Merkenschlager M. Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans. Curr. Opin. Cell Biol. 2013, 25(3):327-333.
    • (2013) Curr. Opin. Cell Biol. , vol.25 , Issue.3 , pp. 327-333
    • Dorsett, D.1    Merkenschlager, M.2
  • 32
    • 84859619817 scopus 로고    scopus 로고
    • The ancient and evolving roles of cohesin in gene expression and DNA repair
    • Dorsett D., Strom L. The ancient and evolving roles of cohesin in gene expression and DNA repair. Curr. Biol. 2012, 22:R240-R250.
    • (2012) Curr. Biol. , vol.22
    • Dorsett, D.1    Strom, L.2
  • 33
    • 84875127327 scopus 로고    scopus 로고
    • CTCF and cohesin: linking gene regulatory elements with their targets
    • Merkenschlager M., Odom D.T. CTCF and cohesin: linking gene regulatory elements with their targets. Cell 2013, 152:1285-1297.
    • (2013) Cell , vol.152 , pp. 1285-1297
    • Merkenschlager, M.1    Odom, D.T.2
  • 34
    • 84857251182 scopus 로고    scopus 로고
    • CTCF: insights into insulator function during development
    • Herold M., Bartkuhn M., Renkawitz R. CTCF: insights into insulator function during development. Development 2012, 139:1045-1057.
    • (2012) Development , vol.139 , pp. 1045-1057
    • Herold, M.1    Bartkuhn, M.2    Renkawitz, R.3
  • 38
    • 39449111307 scopus 로고    scopus 로고
    • Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
    • Stedman W., Kang H., Lin S., Kissil J.L., Bartolomei M.S., Lieberman P.M. Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators. EMBO J. 2008, 27:654-666.
    • (2008) EMBO J. , vol.27 , pp. 654-666
    • Stedman, W.1    Kang, H.2    Lin, S.3    Kissil, J.L.4    Bartolomei, M.S.5    Lieberman, P.M.6
  • 39
    • 84868689387 scopus 로고    scopus 로고
    • Long distance relationships: enhancer-promoter communication and dynamic gene transcription
    • Marsman J., Horsfield J.A. Long distance relationships: enhancer-promoter communication and dynamic gene transcription. Biochim. Biophys. Acta 2012, 1819:1217-1227.
    • (2012) Biochim. Biophys. Acta , vol.1819 , pp. 1217-1227
    • Marsman, J.1    Horsfield, J.A.2
  • 40
    • 84865724573 scopus 로고    scopus 로고
    • CTCF is required for neural development and stochastic expression of clustered pcdh genes in neurons
    • Hirayama T., Tarusawa E., Yoshimura Y., Galjart N., Yagi T. CTCF is required for neural development and stochastic expression of clustered pcdh genes in neurons. Cell Rep. 2012, 2(2):345-357.
    • (2012) Cell Rep. , vol.2 , Issue.2 , pp. 345-357
    • Hirayama, T.1    Tarusawa, E.2    Yoshimura, Y.3    Galjart, N.4    Yagi, T.5
  • 42
    • 84861917541 scopus 로고    scopus 로고
    • Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of Protocadherin-Œ±gene expression
    • Monahan K., Rudnick N., Kehayova P., Pauli F., Newberry K., Myers R., Maniatis T. Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of Protocadherin-Œ±gene expression. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:9125-9155.
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 9125-9155
    • Monahan, K.1    Rudnick, N.2    Kehayova, P.3    Pauli, F.4    Newberry, K.5    Myers, R.6    Maniatis, T.7
  • 45
    • 84869053071 scopus 로고    scopus 로고
    • Cohesin is required for activation of MYC by estradiol
    • McEwan M.V., Eccles M.R., Horsfield J.A. Cohesin is required for activation of MYC by estradiol. PLoS ONE 2012, 7:e49160.
    • (2012) PLoS ONE , vol.7
    • McEwan, M.V.1    Eccles, M.R.2    Horsfield, J.A.3
  • 46
    • 25444494901 scopus 로고    scopus 로고
    • Quantification strategies in real-time PCR
    • International University Line (IUL) La Jolla, CA, USA, S.A. Bustin (Ed.)
    • Pfaffl M. Quantification strategies in real-time PCR. A-Z of Quantitative PCR 2004, vol. 1:87-112. International University Line (IUL) La Jolla, CA, USA. S.A. Bustin (Ed.).
    • (2004) A-Z of Quantitative PCR , vol.1 , pp. 87-112
    • Pfaffl, M.1
  • 47
    • 38549161074 scopus 로고    scopus 로고
    • CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators
    • Bao L., Zhou M., Cui Y. CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators. Nucleic Acids Res. 2008, 36:D83-D87.
    • (2008) Nucleic Acids Res. , vol.36
    • Bao, L.1    Zhou, M.2    Cui, Y.3
  • 49
    • 25444488956 scopus 로고    scopus 로고
    • Transposon tools and methods in zebrafish
    • Kawakami K. Transposon tools and methods in zebrafish. Dev. Dyn. 2005, 234:244-254.
    • (2005) Dev. Dyn. , vol.234 , pp. 244-254
    • Kawakami, K.1
  • 50
    • 33749259257 scopus 로고    scopus 로고
    • Critical role of Brg1 member of the SWI/SNF chromatin remodeling complex during neurogenesis and neural crest induction in zebrafish
    • Eroglu B., Wang G., Tu N., Sun X., Mivechi N.F. Critical role of Brg1 member of the SWI/SNF chromatin remodeling complex during neurogenesis and neural crest induction in zebrafish. Dev. Dyn. 2006, 235:2722-2735.
    • (2006) Dev. Dyn. , vol.235 , pp. 2722-2735
    • Eroglu, B.1    Wang, G.2    Tu, N.3    Sun, X.4    Mivechi, N.F.5
  • 51
    • 63049083915 scopus 로고    scopus 로고
    • How cohesin and CTCF cooperate in regulating gene expression
    • Wendt K.S., Peters J.M. How cohesin and CTCF cooperate in regulating gene expression. Chromosom. Res. 2009, 17:201-214.
    • (2009) Chromosom. Res. , vol.17 , pp. 201-214
    • Wendt, K.S.1    Peters, J.M.2
  • 55
    • 57549089243 scopus 로고    scopus 로고
    • Using TESS to predict transcription factor binding sites in DNA sequence
    • Chapter 2, (Chapter 2:Unit 2.6)
    • Schug J. Using TESS to predict transcription factor binding sites in DNA sequence. Curr. Protoc. Bioinforma. 2008, Chapter 2, (Chapter 2:Unit 2.6).
    • (2008) Curr. Protoc. Bioinforma.
    • Schug, J.1
  • 58
    • 84878372012 scopus 로고    scopus 로고
    • Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
    • N.Cancer Genome Atlas Research
    • N.Cancer Genome Atlas Research Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N. Engl. J. Med. 2013, 368:2059-2074.
    • (2013) N. Engl. J. Med. , vol.368 , pp. 2059-2074


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.