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Volumn 11, Issue , 2013, Pages

The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant

Author keywords

Arabidopsis; PABP; Regulon; Ribosome occupancy; RPL24; Translation state

Indexed keywords

ARABIDOPSIS; EUKARYOTA;

EID: 84891360944     PISSN: None     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/1741-7007-11-123     Document Type: Article
Times cited : (18)

References (63)
  • 2
    • 84882781969 scopus 로고    scopus 로고
    • Genetics. Mysterious ribosomopathies
    • 10.1126/science.1244156, 3893057, 23970686
    • McCann KL, Baserga SJ. Genetics. Mysterious ribosomopathies. Science 2013, 341:849-850. 10.1126/science.1244156, 3893057, 23970686.
    • (2013) Science , vol.341 , pp. 849-850
    • McCann, K.L.1    Baserga, S.J.2
  • 3
    • 84873496797 scopus 로고    scopus 로고
    • Genetics of ribosomal proteins: " curiouser and curiouser"
    • 10.1371/journal.pgen.1003300, 3561088, 23382707
    • Terzian T, Box N. Genetics of ribosomal proteins: " curiouser and curiouser" PLoS Genet 2013, 9:e1003300. 10.1371/journal.pgen.1003300, 3561088, 23382707.
    • (2013) PLoS Genet , vol.9
    • Terzian, T.1    Box, N.2
  • 4
    • 84855594206 scopus 로고    scopus 로고
    • Ribosomal deficiencies in Diamond-Blackfan anemia impair translation of transcripts essential for differentiation of murine and human erythroblasts
    • 10.1182/blood-2011-06-358200, 22058113
    • Horos R, Ijspeert H, Pospisilova D, Sendtner R, Andrieu-Soler C, Taskesen E, Nieradka A, Cmejla R, Sendtner M, Touw IP, von Lindern M. Ribosomal deficiencies in Diamond-Blackfan anemia impair translation of transcripts essential for differentiation of murine and human erythroblasts. Blood 2012, 119:262-272. 10.1182/blood-2011-06-358200, 22058113.
    • (2012) Blood , vol.119 , pp. 262-272
    • Horos, R.1    Ijspeert, H.2    Pospisilova, D.3    Sendtner, R.4    Andrieu-Soler, C.5    Taskesen, E.6    Nieradka, A.7    Cmejla, R.8    Sendtner, M.9    Touw, I.P.10    von Lindern, M.11
  • 5
    • 79955537355 scopus 로고    scopus 로고
    • Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning
    • 10.1016/j.cell.2011.03.028, 21529712
    • Kondrashov N, Pusic A, Stumpf CR, Shimizu K, Hsieh AC, Xue S, Ishijima J, Shiroishi T, Barna M. Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning. Cell 2011, 145:383-397. 10.1016/j.cell.2011.03.028, 21529712.
    • (2011) Cell , vol.145 , pp. 383-397
    • Kondrashov, N.1    Pusic, A.2    Stumpf, C.R.3    Shimizu, K.4    Hsieh, A.C.5    Xue, S.6    Ishijima, J.7    Shiroishi, T.8    Barna, M.9
  • 6
    • 57449111072 scopus 로고    scopus 로고
    • Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana
    • 10.1111/j.1365-313X.2008.03642.x, 18665916
    • Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J 2008, 56:743-755. 10.1111/j.1365-313X.2008.03642.x, 18665916.
    • (2008) Plant J , vol.56 , pp. 743-755
    • Branco-Price, C.1    Kaiser, K.A.2    Jang, C.J.3    Larive, C.K.4    Bailey-Serres, J.5
  • 7
    • 24744454639 scopus 로고    scopus 로고
    • Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation
    • 10.1093/aob/mci217, 16081496
    • Branco-Price C, Kawaguchi R, Ferreira RB, Bailey-Serres J. Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. Ann Bot 2005, 96:647-660. 10.1093/aob/mci217, 16081496.
    • (2005) Ann Bot , vol.96 , pp. 647-660
    • Branco-Price, C.1    Kawaguchi, R.2    Ferreira, R.B.3    Bailey-Serres, J.4
  • 8
    • 84872488206 scopus 로고    scopus 로고
    • Dynamic light regulation of translation status in Arabidopsis thaliana
    • Juntawong P, Bailey-Serres J. Dynamic light regulation of translation status in Arabidopsis thaliana. Frontiers Plant Sci 2012, 3:66.
    • (2012) Frontiers Plant Sci , vol.3 , pp. 66
    • Juntawong, P.1    Bailey-Serres, J.2
  • 9
    • 2542642407 scopus 로고    scopus 로고
    • Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana
    • 10.1111/j.1365-313X.2004.02090.x, 15144383
    • Kawaguchi R, Girke T, Bray EA, Bailey-Serres J. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. Plant J 2004, 38:823-839. 10.1111/j.1365-313X.2004.02090.x, 15144383.
    • (2004) Plant J , vol.38 , pp. 823-839
    • Kawaguchi, R.1    Girke, T.2    Bray, E.A.3    Bailey-Serres, J.4
  • 10
    • 84862908082 scopus 로고    scopus 로고
    • Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis
    • 3296358, 22252389
    • Liu MJ, Wu SH, Chen HM. Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis. Mol Syst Biol 2012, 8:566. 3296358, 22252389.
    • (2012) Mol Syst Biol , vol.8 , pp. 566
    • Liu, M.J.1    Wu, S.H.2    Chen, H.M.3
  • 11
    • 77949365164 scopus 로고    scopus 로고
    • Genome-wide analyses of early translational responses to elevated temperature and high salinity in Arabidopsis thaliana
    • 10.1093/pcp/pcq010, 20089509
    • Matsuura H, Ishibashi Y, Shinmyo A, Kanaya S, Kato K. Genome-wide analyses of early translational responses to elevated temperature and high salinity in Arabidopsis thaliana. Plant Cell Physiol 2010, 51:448-462. 10.1093/pcp/pcq010, 20089509.
    • (2010) Plant Cell Physiol , vol.51 , pp. 448-462
    • Matsuura, H.1    Ishibashi, Y.2    Shinmyo, A.3    Kanaya, S.4    Kato, K.5
  • 13
    • 33745663309 scopus 로고    scopus 로고
    • Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control
    • 10.1104/pp.106.079418, 1475480, 16632591
    • Nicolai M, Roncato MA, Canoy AS, Rouquie D, Sarda X, Freyssinet G, Robaglia C. Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control. Plant Physiol 2006, 141:663-673. 10.1104/pp.106.079418, 1475480, 16632591.
    • (2006) Plant Physiol , vol.141 , pp. 663-673
    • Nicolai, M.1    Roncato, M.A.2    Canoy, A.S.3    Rouquie, D.4    Sarda, X.5    Freyssinet, G.6    Robaglia, C.7
  • 15
    • 84865251873 scopus 로고    scopus 로고
    • Genome-wide analyses of changes in translation state caused by elevated temperature in Oryza sativa
    • 10.1093/pcp/pcs092, 22722767
    • Ueda K, Matsuura H, Yamaguchi M, Demura T, Kato K. Genome-wide analyses of changes in translation state caused by elevated temperature in Oryza sativa. Plant Cell physiol 2012, 53:1481-1491. 10.1093/pcp/pcs092, 22722767.
    • (2012) Plant Cell physiol , vol.53 , pp. 1481-1491
    • Ueda, K.1    Matsuura, H.2    Yamaguchi, M.3    Demura, T.4    Kato, K.5
  • 16
    • 84892987555 scopus 로고    scopus 로고
    • Analysis of genome-wide changes in the translatome of Arabidopsis seedlings subjected to heat stress
    • 10.1371/journal.pone.0071425, 3747205, 23977042
    • Yanguez E, Castro-Sanz AB, Fernandez-Bautista N, Oliveros JC, Castellano MM. Analysis of genome-wide changes in the translatome of Arabidopsis seedlings subjected to heat stress. PLoS One 2013, 8:e71425. 10.1371/journal.pone.0071425, 3747205, 23977042.
    • (2013) PLoS One , vol.8
    • Yanguez, E.1    Castro-Sanz, A.B.2    Fernandez-Bautista, N.3    Oliveros, J.C.4    Castellano, M.M.5
  • 17
    • 84891960868 scopus 로고    scopus 로고
    • Translational regulation of cytoplasmic mRNAs
    • Rockville, MD: American Society of Plant Biologists, Chang C, Torii K, 3727577, 23908601
    • Roy B, von Arnim AG. Translational regulation of cytoplasmic mRNAs. The Arabidopsis Book 2013, 11:e0165. Rockville, MD: American Society of Plant Biologists, Chang C, Torii K, 3727577, 23908601.
    • (2013) The Arabidopsis Book , vol.11
    • Roy, B.1    von Arnim, A.G.2
  • 18
    • 68249152550 scopus 로고    scopus 로고
    • Evidence for variation in the optimal translation initiation complex: plant eIF4B, eIF4F, and eIF(iso)4 F differentially promote translation of mRNAs
    • 10.1104/pp.109.138438, 2719132, 19493973
    • Mayberry LK, Allen ML, Dennis MD, Browning KS. Evidence for variation in the optimal translation initiation complex: plant eIF4B, eIF4F, and eIF(iso)4 F differentially promote translation of mRNAs. Plant Physiol 2009, 150:1844-1854. 10.1104/pp.109.138438, 2719132, 19493973.
    • (2009) Plant Physiol , vol.150 , pp. 1844-1854
    • Mayberry, L.K.1    Allen, M.L.2    Dennis, M.D.3    Browning, K.S.4
  • 19
    • 82755176170 scopus 로고    scopus 로고
    • Plant cap-binding complexes eukaryotic initiation factors eIF4F and eIFiso4F: molecular specificity of subunit binding
    • 10.1074/jbc.M111.280099, 3234931, 21965660
    • Mayberry LK, Allen ML, Nitka KR, Campbell L, Murphy PA, Browning KS. Plant cap-binding complexes eukaryotic initiation factors eIF4F and eIFiso4F: molecular specificity of subunit binding. J Biol Chem 2011, 286:42566-42574. 10.1074/jbc.M111.280099, 3234931, 21965660.
    • (2011) J Biol Chem , vol.286 , pp. 42566-42574
    • Mayberry, L.K.1    Allen, M.L.2    Nitka, K.R.3    Campbell, L.4    Murphy, P.A.5    Browning, K.S.6
  • 20
    • 35748946957 scopus 로고    scopus 로고
    • On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation
    • 10.1186/gb-2007-8-4-r60, 1896003, 17439654
    • Kim BH, Cai X, Vaughn JN, von Arnim AG. On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation. Genome Biol 2007, 8:R60. 10.1186/gb-2007-8-4-r60, 1896003, 17439654.
    • (2007) Genome Biol , vol.8
    • Kim, B.H.1    Cai, X.2    Vaughn, J.N.3    von Arnim, A.G.4
  • 21
    • 21644490138 scopus 로고    scopus 로고
    • Translational regulation via 5′ mRNA leader sequences revealed by mutational analysis of the Arabidopsis translation initiation factor subunit eIF3h
    • 10.1105/tpc.104.026880, 535877, 15548739
    • Kim TH, Kim BH, Yahalom A, Chamovitz DA, von Arnim AG. Translational regulation via 5′ mRNA leader sequences revealed by mutational analysis of the Arabidopsis translation initiation factor subunit eIF3h. Plant Cell 2004, 16:3341-3356. 10.1105/tpc.104.026880, 535877, 15548739.
    • (2004) Plant Cell , vol.16 , pp. 3341-3356
    • Kim, T.H.1    Kim, B.H.2    Yahalom, A.3    Chamovitz, D.A.4    von Arnim, A.G.5
  • 22
    • 0035929148 scopus 로고    scopus 로고
    • A plant viral " reinitiation" factor interacts with the host translational machinery
    • 10.1016/S0092-8674(01)00487-1, 11572778
    • Park HS, Himmelbach A, Browning KS, Hohn T, Ryabova LA. A plant viral " reinitiation" factor interacts with the host translational machinery. Cell 2001, 106:723-733. 10.1016/S0092-8674(01)00487-1, 11572778.
    • (2001) Cell , vol.106 , pp. 723-733
    • Park, H.S.1    Himmelbach, A.2    Browning, K.S.3    Hohn, T.4    Ryabova, L.A.5
  • 23
    • 84876419655 scopus 로고    scopus 로고
    • TOR and S6K1 promote translation reinitiation of uORF-containing mRNAs via phosphorylation of eIF3h
    • 10.1038/emboj.2013.61, 23524850
    • Schepetilnikov M, Dimitrova M, Mancera-Martinez E, Geldreich A, Keller M, Ryabova LA. TOR and S6K1 promote translation reinitiation of uORF-containing mRNAs via phosphorylation of eIF3h. EMBO J 2013, 32:1087-1102. 10.1038/emboj.2013.61, 23524850.
    • (2013) EMBO J , vol.32 , pp. 1087-1102
    • Schepetilnikov, M.1    Dimitrova, M.2    Mancera-Martinez, E.3    Geldreich, A.4    Keller, M.5    Ryabova, L.A.6
  • 24
    • 77950243975 scopus 로고    scopus 로고
    • The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames
    • 10.1261/rna.2056010, 2844622, 20179149
    • Roy B, Vaughn JN, Kim BH, Zhou F, Gilchrist MA, von Arnim AG. The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames. RNA 2010, 16:748-761. 10.1261/rna.2056010, 2844622, 20179149.
    • (2010) RNA , vol.16 , pp. 748-761
    • Roy, B.1    Vaughn, J.N.2    Kim, B.H.3    Zhou, F.4    Gilchrist, M.A.5    von Arnim, A.G.6
  • 25
    • 77955963597 scopus 로고    scopus 로고
    • Translation reinitiation and development are compromised in similar ways by mutations in translation initiation factor eIF3h and the ribosomal protein RPL24
    • 10.1186/1471-2229-10-193, 3020687, 20799971
    • Zhou F, Roy B, von Arnim AG. Translation reinitiation and development are compromised in similar ways by mutations in translation initiation factor eIF3h and the ribosomal protein RPL24. BMC Plant Biol 2010, 10:193. 10.1186/1471-2229-10-193, 3020687, 20799971.
    • (2010) BMC Plant Biol , vol.10 , pp. 193
    • Zhou, F.1    Roy, B.2    von Arnim, A.G.3
  • 26
    • 33645973556 scopus 로고    scopus 로고
    • The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning
    • 10.1105/tpc.105.036533, 1276021, 16227452
    • Nishimura T, Wada T, Yamamoto KT, Okada K. The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Plant Cell 2005, 17:2940-2953. 10.1105/tpc.105.036533, 1276021, 16227452.
    • (2005) Plant Cell , vol.17 , pp. 2940-2953
    • Nishimura, T.1    Wada, T.2    Yamamoto, K.T.3    Okada, K.4
  • 27
    • 77955000545 scopus 로고    scopus 로고
    • Application of the gene dosage balance hypothesis to auxin-related ribosomal mutants in Arabidopsis
    • 10.4161/psb.5.4.11341, 2958597, 20383066
    • Rosado A, Raikhel NV. Application of the gene dosage balance hypothesis to auxin-related ribosomal mutants in Arabidopsis. Plant Signal Behav 2010, 5:450-452. 10.4161/psb.5.4.11341, 2958597, 20383066.
    • (2010) Plant Signal Behav , vol.5 , pp. 450-452
    • Rosado, A.1    Raikhel, N.V.2
  • 29
    • 4544271480 scopus 로고    scopus 로고
    • Ribosomal protein L24 defect in belly spot and tail (Bst), a mouse Minute
    • 10.1242/dev.01268, 2262800, 15289434
    • Oliver ER, Saunders TL, Tarle SA, Glaser T. Ribosomal protein L24 defect in belly spot and tail (Bst), a mouse Minute. Development 2004, 131:3907-3920. 10.1242/dev.01268, 2262800, 15289434.
    • (2004) Development , vol.131 , pp. 3907-3920
    • Oliver, E.R.1    Saunders, T.L.2    Tarle, S.A.3    Glaser, T.4
  • 30
    • 0034691271 scopus 로고    scopus 로고
    • Yeast ribosomal protein L24 affects the kinetics of protein synthesis and ribosomal protein L39 improves translational accuracy, while mutants lacking both remain viable
    • 10.1021/bi9925266, 10852723
    • Dresios J, Derkatch IL, Liebman SW, Synetos D. Yeast ribosomal protein L24 affects the kinetics of protein synthesis and ribosomal protein L39 improves translational accuracy, while mutants lacking both remain viable. Biochemistry 2000, 39:7236-7244. 10.1021/bi9925266, 10852723.
    • (2000) Biochemistry , vol.39 , pp. 7236-7244
    • Dresios, J.1    Derkatch, I.L.2    Liebman, S.W.3    Synetos, D.4
  • 31
    • 0025043097 scopus 로고
    • Ribosomal protein L30 is dispensable in the yeast Saccharomyces cerevisiae
    • 361207, 2204809
    • Baronas-Lowell DM, Warner JR. Ribosomal protein L30 is dispensable in the yeast Saccharomyces cerevisiae. Mol Cell Biol 1990, 10:5235-5243. 361207, 2204809.
    • (1990) Mol Cell Biol , vol.10 , pp. 5235-5243
    • Baronas-Lowell, D.M.1    Warner, J.R.2
  • 32
    • 0017799839 scopus 로고
    • The course of the assembly of ribosomal subunits in yeast
    • 10.1016/0005-2787(78)90204-6, 626744
    • Kruiswijk T, Planta RJ, Krop JM. The course of the assembly of ribosomal subunits in yeast. Biochim Biophys Acta 1978, 517:378-389. 10.1016/0005-2787(78)90204-6, 626744.
    • (1978) Biochim Biophys Acta , vol.517 , pp. 378-389
    • Kruiswijk, T.1    Planta, R.J.2    Krop, J.M.3
  • 33
    • 0037279714 scopus 로고    scopus 로고
    • Unexpected complexity of poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation
    • 1462424, 12586718
    • Belostotsky DA. Unexpected complexity of poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation. Genetics 2003, 163:311-319. 1462424, 12586718.
    • (2003) Genetics , vol.163 , pp. 311-319
    • Belostotsky, D.A.1
  • 34
    • 52649166319 scopus 로고    scopus 로고
    • Arabidopsis thaliana class II poly(A)-binding proteins are required for efficient multiplication of turnip mosaic virus
    • 10.1099/vir.0.2008/002139-0, 18753244
    • Dufresne PJ, Ubalijoro E, Fortin MG, Laliberte JF. Arabidopsis thaliana class II poly(A)-binding proteins are required for efficient multiplication of turnip mosaic virus. J Gen Virol 2008, 89:2339-2348. 10.1099/vir.0.2008/002139-0, 18753244.
    • (2008) J Gen Virol , vol.89 , pp. 2339-2348
    • Dufresne, P.J.1    Ubalijoro, E.2    Fortin, M.G.3    Laliberte, J.F.4
  • 35
    • 0034033177 scopus 로고    scopus 로고
    • Conserved expression of Arabidopsis thaliana poly(A) binding protein 2 (PAB2) in distinct vegetative and reproductive tissues
    • 10.1046/j.1365-313x.2000.00720.x, 10849338
    • Palanivelu R, Belostotsky DA, Meagher RB. Conserved expression of Arabidopsis thaliana poly(A) binding protein 2 (PAB2) in distinct vegetative and reproductive tissues. Plant J 2000, 22:199-210. 10.1046/j.1365-313x.2000.00720.x, 10849338.
    • (2000) Plant J , vol.22 , pp. 199-210
    • Palanivelu, R.1    Belostotsky, D.A.2    Meagher, R.B.3
  • 36
    • 84864387263 scopus 로고    scopus 로고
    • Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3′ untranslated region
    • 10.1128/JVI.00538-12, 3421650, 22593149
    • Iwakawa HO, Tajima Y, Taniguchi T, Kaido M, Mise K, Tomari Y, Taniguchi H, Okuno T. Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3′ untranslated region. J Virol 2012, 86:7836-7849. 10.1128/JVI.00538-12, 3421650, 22593149.
    • (2012) J Virol , vol.86 , pp. 7836-7849
    • Iwakawa, H.O.1    Tajima, Y.2    Taniguchi, T.3    Kaido, M.4    Mise, K.5    Tomari, Y.6    Taniguchi, H.7    Okuno, T.8
  • 37
    • 77957038395 scopus 로고    scopus 로고
    • Competitive and noncompetitive binding of eIF4B, eIF4A, and the poly(A) binding protein to wheat translation initiation factor eIFiso4G
    • 10.1021/bi1008529, 20795652
    • Cheng S, Gallie DR. Competitive and noncompetitive binding of eIF4B, eIF4A, and the poly(A) binding protein to wheat translation initiation factor eIFiso4G. Biochemistry 2010, 49:8251-8265. 10.1021/bi1008529, 20795652.
    • (2010) Biochemistry , vol.49 , pp. 8251-8265
    • Cheng, S.1    Gallie, D.R.2
  • 38
    • 11844281461 scopus 로고    scopus 로고
    • Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms
    • 10.1101/gad.1262905, 540229, 15630022
    • Kahvejian A, Svitkin YV, Sukarieh R, M'Boutchou MN, Sonenberg N. Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms. Genes Dev 2005, 19:104-113. 10.1101/gad.1262905, 540229, 15630022.
    • (2005) Genes Dev , vol.19 , pp. 104-113
    • Kahvejian, A.1    Svitkin, Y.V.2    Sukarieh, R.3    M'Boutchou, M.N.4    Sonenberg, N.5
  • 39
    • 0034100762 scopus 로고    scopus 로고
    • Eukaryotic translation initiation: there are (at least) two sides to every story
    • 10.1038/75120, 10802729
    • Sachs AB, Varani G. Eukaryotic translation initiation: there are (at least) two sides to every story. Nat Struct Biol 2000, 7:356-361. 10.1038/75120, 10802729.
    • (2000) Nat Struct Biol , vol.7 , pp. 356-361
    • Sachs, A.B.1    Varani, G.2
  • 40
    • 84867622549 scopus 로고    scopus 로고
    • Control of cytoplasmic translation in plants
    • 10.1002/wrna.1104, 22215505
    • Muench DG, Zhang C, Dahodwala M. Control of cytoplasmic translation in plants. Wiley Interdiscip Rev RNA 2012, 3:178-194. 10.1002/wrna.1104, 22215505.
    • (2012) Wiley Interdiscip Rev RNA , vol.3 , pp. 178-194
    • Muench, D.G.1    Zhang, C.2    Dahodwala, M.3
  • 41
    • 69449096380 scopus 로고    scopus 로고
    • Polyadenylation-assisted RNA degradation processes in plants
    • 10.1016/j.tplants.2009.06.007, 19716749
    • Lange H, Sement FM, Canaday J, Gagliardi D. Polyadenylation-assisted RNA degradation processes in plants. Trends Plant Sci 2009, 14:497-504. 10.1016/j.tplants.2009.06.007, 19716749.
    • (2009) Trends Plant Sci , vol.14 , pp. 497-504
    • Lange, H.1    Sement, F.M.2    Canaday, J.3    Gagliardi, D.4
  • 43
    • 82555184787 scopus 로고    scopus 로고
    • Transcriptional regulation of ribosome components are determined by stress according to cellular compartments in Arabidopsis thaliana
    • 10.1371/journal.pone.0028070, 3229498, 22164228
    • Sormani R, Masclaux-Daubresse C, Daniel-Vedele F, Chardon F. Transcriptional regulation of ribosome components are determined by stress according to cellular compartments in Arabidopsis thaliana. PLoS One 2011, 6:e28070. 10.1371/journal.pone.0028070, 3229498, 22164228.
    • (2011) PLoS One , vol.6
    • Sormani, R.1    Masclaux-Daubresse, C.2    Daniel-Vedele, F.3    Chardon, F.4
  • 45
    • 84860523326 scopus 로고    scopus 로고
    • Atomic structures of the eukaryotic ribosome
    • 10.1016/j.tibs.2012.02.007, 22436288
    • Klinge S, Voigts-Hoffmann F, Leibundgut M, Ban N. Atomic structures of the eukaryotic ribosome. Trends Biochem Sci 2012, 37:189-198. 10.1016/j.tibs.2012.02.007, 22436288.
    • (2012) Trends Biochem Sci , vol.37 , pp. 189-198
    • Klinge, S.1    Voigts-Hoffmann, F.2    Leibundgut, M.3    Ban, N.4
  • 46
    • 80052742721 scopus 로고    scopus 로고
    • Molecular mechanism of scanning and start codon selection in eukaryotes
    • 10.1128/MMBR.00008-11, 3165540, 21885680
    • Hinnebusch AG. Molecular mechanism of scanning and start codon selection in eukaryotes. Microbiol Mol Biol Rev 2011, 75:434-467. 10.1128/MMBR.00008-11, 3165540, 21885680.
    • (2011) Microbiol Mol Biol Rev , vol.75 , pp. 434-467
    • Hinnebusch, A.G.1
  • 47
    • 84883504507 scopus 로고    scopus 로고
    • Interaction between 25S rRNA A loop and eukaryotic translation initiation factor 5B promotes subunit joining and ensures stringent AUG selection
    • 10.1128/MCB.00771-13, 23836883
    • Hiraishi H, Shin BS, Udagawa T, Nemoto N, Chowdhury W, Graham J, Cox C, Reid M, Brown SJ, Asano K. Interaction between 25S rRNA A loop and eukaryotic translation initiation factor 5B promotes subunit joining and ensures stringent AUG selection. Mol Cell Biol 2013, 33:3540-3548. 10.1128/MCB.00771-13, 23836883.
    • (2013) Mol Cell Biol , vol.33 , pp. 3540-3548
    • Hiraishi, H.1    Shin, B.S.2    Udagawa, T.3    Nemoto, N.4    Chowdhury, W.5    Graham, J.6    Cox, C.7    Reid, M.8    Brown, S.J.9    Asano, K.10
  • 48
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • 10.1016/j.cell.2011.10.002, 3225288, 22056041
    • Ingolia NT, Lareau LF, Weissman JS. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 2011, 147:789-802. 10.1016/j.cell.2011.10.002, 3225288, 22056041.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 49
    • 1642465435 scopus 로고    scopus 로고
    • An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics
    • Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol Biol 2003, 53:247-259.
    • (2003) Plant Mol Biol , vol.53 , pp. 247-259
    • Rosso, M.G.1    Li, Y.2    Strizhov, N.3    Reiss, B.4    Dekker, K.5    Weisshaar, B.6
  • 50
    • 36348996412 scopus 로고    scopus 로고
    • Origins and principles of translational control
    • Cold Spring Harbor, NY: CSHL Press, Mathews MB, Sonenberg N, Hershey JWB
    • Mathews MB, Sonenberg N, Hershey JWB. Origins and principles of translational control. Translational Control in Biology and Medicine 2007, 1-40. Cold Spring Harbor, NY: CSHL Press, Mathews MB, Sonenberg N, Hershey JWB.
    • (2007) Translational Control in Biology and Medicine , pp. 1-40
    • Mathews, M.B.1    Sonenberg, N.2    Hershey, J.W.B.3
  • 52
    • 33645287677 scopus 로고    scopus 로고
    • AffylmGUI: a graphical user interface for linear modeling of single channel microarray data
    • 10.1093/bioinformatics/btl025, 16455752
    • Wettenhall JM, Simpson KM, Satterley K, Smyth GK. affylmGUI: a graphical user interface for linear modeling of single channel microarray data. Bioinformatics 2006, 22:897-899. 10.1093/bioinformatics/btl025, 16455752.
    • (2006) Bioinformatics , vol.22 , pp. 897-899
    • Wettenhall, J.M.1    Simpson, K.M.2    Satterley, K.3    Smyth, G.K.4
  • 53
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Statist Soc B 1995, 57:289-300.
    • (1995) J Roy Statist Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 54
    • 33644872577 scopus 로고    scopus 로고
    • Limma: linear models for microarray data
    • New York, NY: Springer, Gentleman VR, Carey SD, Irizarry R, Huber W
    • Smyth GK. Limma: linear models for microarray data. Bioinformatics and Computational Biology Solutions using R and Bioconductor 2005, 397-420. New York, NY: Springer, Gentleman VR, Carey SD, Irizarry R, Huber W.
    • (2005) Bioinformatics and Computational Biology Solutions using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 55
    • 0037057374 scopus 로고    scopus 로고
    • Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
    • Gasch AP, Eisen MB. Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. Genome Biol 2002, 3:R59.
    • (2002) Genome Biol , vol.3
    • Gasch, A.P.1    Eisen, M.B.2
  • 56
    • 0024701488 scopus 로고
    • Unsupervised optimalf fuzzy clustering
    • Gath I. Unsupervised optimalf fuzzy clustering. IEEE Trans Pattern Anal Mach Intell 1989, 11:773-780.
    • (1989) IEEE Trans Pattern Anal Mach Intell , vol.11 , pp. 773-780
    • Gath, I.1
  • 57
    • 49549087657 scopus 로고    scopus 로고
    • 2012 cluster: cluster analysis basics and extensions. R package version 1.14.3
    • Maechler M, Rousseuw P, Struyf A, Hubert M, Hornik K. 2012 cluster: cluster analysis basics and extensions. R package version 1.14.3. [http://cran.r-project.org/web/packages/cluster/index.html].
    • Maechler, M.1    Rousseuw, P.2    Struyf, A.3    Hubert, M.4    Hornik, K.5
  • 58
    • 84892959945 scopus 로고    scopus 로고
    • TM4
    • Dana-Farber Cancer Institute
    • Dana-Farber Cancer Institute TM4. [http://www.tm4.org/mev/credits/references], Dana-Farber Cancer Institute.
  • 59
    • 0036169031 scopus 로고    scopus 로고
    • Genesis: cluster analysis of microarray data
    • 10.1093/bioinformatics/18.1.207, 11836235
    • Sturn A, Quackenbush J, Trajanoski Z. Genesis: cluster analysis of microarray data. Bioinformatics 2002, 18:207-208. 10.1093/bioinformatics/18.1.207, 11836235.
    • (2002) Bioinformatics , vol.18 , pp. 207-208
    • Sturn, A.1    Quackenbush, J.2    Trajanoski, Z.3
  • 61
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4:44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 62
    • 12144291195 scopus 로고    scopus 로고
    • MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    • 10.1111/j.1365-313X.2004.02016.x, 14996223
    • Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Muller LA, Rhee SY, Stitt M. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 2004, 37:914-939. 10.1111/j.1365-313X.2004.02016.x, 14996223.
    • (2004) Plant J , vol.37 , pp. 914-939
    • Thimm, O.1    Blasing, O.2    Gibon, Y.3    Nagel, A.4    Meyer, S.5    Krüger, P.6    Selbig, J.7    Muller, L.A.8    Rhee, S.Y.9    Stitt, M.10


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