-
1
-
-
80052918929
-
Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment
-
Hodges E, Molaro A, Dos Santos CO, et al. Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment. Mol Cell. 2011;44(1): 17-28.
-
(2011)
Mol Cell
, vol.44
, Issue.1
, pp. 17-28
-
-
Hodges, E.1
Molaro, A.2
Dos Santos, C.O.3
-
2
-
-
66149147557
-
Developmental programming of CpG island methylation profiles in the human genome
-
Straussman R, Nejman D, Roberts D, et al. Developmental programming of CpG island methylation profiles in the human genome. Nat Struct Mol Biol. 2009;16(5): 564-571.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.5
, pp. 564-571
-
-
Straussman, R.1
Nejman, D.2
Roberts, D.3
-
3
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst J, Kheradpour P, Mikkelsen TS, et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature. 2011; 473(7345): 43-49.
-
(2011)
Nature
, vol.473
, Issue.7345
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
-
4
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones PA. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet. 2012;13(7): 484-492.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.7
, pp. 484-492
-
-
Jones, P.A.1
-
5
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet. 2010;11(3): 204-220.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.3
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
6
-
-
77957970301
-
Epigenetic modifications and human disease
-
Portela A, Esteller M. Epigenetic modifications and human disease. Nat Biotechnol. 2010;28(10): 1057-1068.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.10
, pp. 1057-1068
-
-
Portela, A.1
Esteller, M.2
-
7
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
Cedar H, Bergman Y. Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet. 2009;10(5): 295-304.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.5
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
8
-
-
79959674418
-
Epigenetics of haematopoietic cell development
-
Cedar H, Bergman Y. Epigenetics of haematopoietic cell development. Nat Rev Immunol. 2011;11(7): 478-488.
-
(2011)
Nat Rev Immunol
, vol.11
, Issue.7
, pp. 478-488
-
-
Cedar, H.1
Bergman, Y.2
-
9
-
-
77954504873
-
Conserved role of intragenic DNA methylation in regulating alternative promoters
-
Maunakea AK, Nagarajan RP, Bilenky M, et al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature. 2010; 466(7303): 253-257.
-
(2010)
Nature
, vol.466
, Issue.7303
, pp. 253-257
-
-
Maunakea, A.K.1
Nagarajan, R.P.2
Bilenky, M.3
-
10
-
-
84855956247
-
Epigenetics and the environment: Emerging patterns and implications
-
Feil R, Fraga MF. Epigenetics and the environment: emerging patterns and implications. Nat Rev Genet. 2011;13(2): 97-109.
-
(2011)
Nat Rev Genet
, vol.13
, Issue.2
, pp. 97-109
-
-
Feil, R.1
Fraga, M.F.2
-
11
-
-
79955623575
-
Epigenetic alterations in autoimmune rheumatic diseases
-
Ballestar E. Epigenetic alterations in autoimmune rheumatic diseases. Nat Rev Rheumatol. 2011; 7(5): 263-271.
-
(2011)
Nat Rev Rheumatol
, vol.7
, Issue.5
, pp. 263-271
-
-
Ballestar, E.1
-
12
-
-
79959872458
-
Cell typespecific DNA methylation at intragenic CpG islands in the immune system
-
Deaton AM, Webb S, Kerr AR, et al. Cell typespecific DNA methylation at intragenic CpG islands in the immune system. Genome Res. 2011;21(7): 1074-1086.
-
(2011)
Genome Res
, vol.21
, Issue.7
, pp. 1074-1086
-
-
Deaton, A.M.1
Webb, S.2
Kerr, A.R.3
-
13
-
-
84855292213
-
A promoter DNA demethylation landscape of human hematopoietic differentiation
-
Calvanese V, Fernández AF, Urdinguio RG, et al. A promoter DNA demethylation landscape of human hematopoietic differentiation. Nucleic Acids Res. 2012;40(1): 116-131.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.1
, pp. 116-131
-
-
Calvanese, V.1
Fernández, A.F.2
Urdinguio, R.G.3
-
14
-
-
79955970344
-
Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging
-
Bocker MT, Hellwig I, Breiling A, Eckstein V, Ho AD, Lyko F. Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging. Blood. 2011;117(19):e182-e189.
-
(2011)
Blood
, vol.117
, Issue.19
-
-
Bocker, M.T.1
Hellwig, I.2
Breiling, A.3
Eckstein, V.4
Ho, A.D.5
Lyko, F.6
-
15
-
-
80053304450
-
High density DNA methylation array with single CpG site resolution
-
Bibikova M, Barnes B, Tsan C, et al. High density DNA methylation array with single CpG site resolution. Genomics. 2011;98(4): 288-295.
-
(2011)
Genomics
, vol.98
, Issue.4
, pp. 288-295
-
-
Bibikova, M.1
Barnes, B.2
Tsan, C.3
-
16
-
-
77957937011
-
Quantitative comparison of genome-wide DNA methylation mapping technologies
-
Bock C, Tomazou EM, Brinkman AB, et al. Quantitative comparison of genome-wide DNA methylation mapping technologies. Nat Biotechnol. 2010;28(10): 1106-1114.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.10
, pp. 1106-1114
-
-
Bock, C.1
Tomazou, E.M.2
Brinkman, A.B.3
-
17
-
-
46949098742
-
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
-
DOI 10.1038/nbt1414, PII NBT1414
-
Down TA, Rakyan VK, Turner DJ, et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol. 2008;26(7): 779-785. (Pubitemid 351961453)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 779-785
-
-
Down, T.A.1
Rakyan, V.K.2
Turner, D.J.3
Flicek, P.4
Li, H.5
Kulesha, E.6
Graf, S.7
Johnson, N.8
Herrero, J.9
Tomazou, E.M.10
Thorne, N.P.11
Backdahl, L.12
Herberth, M.13
Howe, K.L.14
Jackson, D.K.15
Miretti, M.M.16
Marioni, J.C.17
Birney, E.18
Hubbard, T.J.P.19
Durbin, R.20
Tavare, S.21
Beck, S.22
more..
-
18
-
-
33947410350
-
Microarray analysis of human leucocyte subsets: The advantages of positive selection and rapid purification
-
Lyons PA, Koukoulaki M, Hatton A, et al. Microarray analysis of human leucocyte subsets: the advantages of positive selection and rapid purification. BMC Genomics. 2007;8:64.
-
(2007)
BMC Genomics
, vol.8
, pp. 64
-
-
Lyons, P.A.1
Koukoulaki, M.2
Hatton, A.3
-
19
-
-
84870525593
-
A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(-) for methylome profiling
-
Clark C, Palta P, Joyce CJ, et al. A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(-) for methylome profiling. PLoS ONE. 2012;7(11): e50233.
-
(2012)
PLoS ONE
, vol.7
, Issue.11
-
-
Clark, C.1
Palta, P.2
Joyce, C.J.3
-
20
-
-
46249088370
-
Lumi: A pipeline for processing Illumina microarray
-
DOI 10.1093/bioinformatics/btn224
-
Du P, Kibbe WA, Lin SM. lumi: a pipeline for processing Illumina microarray. Bioinformatics. 2008;24(13): 1547-1548. (Pubitemid 351911712)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
21
-
-
78649475003
-
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
-
Du P, Zhang X, Huang CC, et al. Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics. 2010;11:587.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 587
-
-
Du, P.1
Zhang, X.2
Huang, C.C.3
-
22
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article 3
-
Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol. 2004;3:Article 3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
23
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W, von Heydebreck A, Sültmann H, Poustka A, Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics. 2002;18(suppl 1):S96-S104. (Pubitemid 41185642)
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Huber, W.1
Von Heydebreck, A.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
24
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003;4(2): 249-264.
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
-
25
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14): 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
26
-
-
77953718058
-
Novel expression signatures identified by transcriptional analysis of separated leucocyte subsets in systemic lupus erythematosus and vasculitis
-
Lyons PA, McKinney EF, Rayner TF, et al. Novel expression signatures identified by transcriptional analysis of separated leucocyte subsets in systemic lupus erythematosus and vasculitis. Ann Rheum Dis. 2010;69(6): 1208-1213.
-
(2010)
Ann Rheum Dis
, vol.69
, Issue.6
, pp. 1208-1213
-
-
Lyons, P.A.1
McKinney, E.F.2
Rayner, T.F.3
-
27
-
-
70649095120
-
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
-
Doi A, Park IH, Wen B, et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat Genet. 2009;41(12): 1350-1353.
-
(2009)
Nat Genet
, vol.41
, Issue.12
, pp. 1350-1353
-
-
Doi, A.1
Park, I.H.2
Wen, B.3
-
28
-
-
77956902023
-
Comprehensive methylome map of lineage commitment from haematopoietic progenitors
-
Ji H, Ehrlich LI, Seita J, et al. Comprehensive methylome map of lineage commitment from haematopoietic progenitors. Nature. 2010; 467(7313): 338-342.
-
(2010)
Nature
, vol.467
, Issue.7313
, pp. 338-342
-
-
Ji, H.1
Ehrlich, L.I.2
Seita, J.3
-
29
-
-
59149084538
-
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissuespecific CpG island shores
-
Irizarry RA, Ladd-Acosta C, Wen B, et al. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissuespecific CpG island shores. Nat Genet. 2009; 41(2): 178-186.
-
(2009)
Nat Genet
, vol.41
, Issue.2
, pp. 178-186
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Wen, B.3
-
30
-
-
77249137168
-
Principles and challenges of genomewide DNA methylation analysis
-
Laird PW. Principles and challenges of genomewide DNA methylation analysis. Nat Rev Genet. 2010;11(3): 191-203.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.3
, pp. 191-203
-
-
Laird, P.W.1
-
31
-
-
67349120686
-
Genetic susceptibility to SLE: New insights from fine mapping and genome-wide association studies
-
Harley IT, Kaufman KM, Langefeld CD, Harley JB, Kelly JA. Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies. Nat Rev Genet. 2009;10(5): 285-290.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.5
, pp. 285-290
-
-
Harley, I.T.1
Kaufman, K.M.2
Langefeld, C.D.3
Harley, J.B.4
Kelly, J.A.5
-
32
-
-
44349124113
-
The genetics and immunopathogenesis of inflammatory bowel disease
-
DOI 10.1038/nri2340, PII NRI2340
-
Cho JH. The genetics and immunopathogenesis of inflammatory bowel disease. Nat Rev Immunol. 2008;8(6): 458-466. (Pubitemid 351733422)
-
(2008)
Nature Reviews Immunology
, vol.8
, Issue.6
, pp. 458-466
-
-
Cho, J.H.1
-
33
-
-
80054746235
-
Understanding type 1 diabetes through genetics: Advances and prospects
-
Polychronakos C, Li Q. Understanding type 1 diabetes through genetics: advances and prospects. Nat Rev Genet. 2011;12(11): 781-792.
-
(2011)
Nat Rev Genet
, vol.12
, Issue.11
, pp. 781-792
-
-
Polychronakos, C.1
Li, Q.2
-
34
-
-
78649489009
-
Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci
-
Franke A, McGovern DP, Barrett JC, et al. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Nat Genet. 2010;42(12): 1118-1125.
-
(2010)
Nat Genet
, vol.42
, Issue.12
, pp. 1118-1125
-
-
Franke, A.1
McGovern, D.P.2
Barrett, J.C.3
-
35
-
-
79952195585
-
Metaanalysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
-
Anderson CA, Boucher G, Lees CW, et al. Metaanalysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. Nat Genet. 2011;43(3): 246-252.
-
(2011)
Nat Genet
, vol.43
, Issue.3
, pp. 246-252
-
-
Anderson, C.A.1
Boucher, G.2
Lees, C.W.3
-
36
-
-
79953208931
-
Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis
-
UK PBC Consortium; Wellcome Trust Case Control Consortium 3
-
Mells GF, Floyd JA, Morley KI, et al; UK PBC Consortium; Wellcome Trust Case Control Consortium 3. Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis. Nat Genet. 2011; 43(4): 329-332.
-
(2011)
Nat Genet
, vol.43
, Issue.4
, pp. 329-332
-
-
Mells, G.F.1
Floyd, J.A.2
Morley, K.I.3
-
37
-
-
80054976037
-
Published correction appears
-
[published correction appears in Nat Genet. 2011;43(11): 1164].
-
(2011)
Nat Genet
, vol.43
, Issue.11
, pp. 1164
-
-
-
38
-
-
67349199566
-
Type 1 Diabetes Genetics Consortium. Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes
-
Barrett JC, Clayton DG, Concannon P, et al; Type 1 Diabetes Genetics Consortium. Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. Nat Genet. 2009;41(6): 703-707.
-
(2009)
Nat Genet
, vol.41
, Issue.6
, pp. 703-707
-
-
Barrett, J.C.1
Clayton, D.G.2
Concannon, P.3
-
39
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
and the ENCODE Project Consortium
-
Bernstein BE, Birney E, Dunham I et al, and the ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012;489(7414): 57-74.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
|