-
1
-
-
84886098705
-
Structural diversity of calmodulin binding to its target sites
-
101111/febs12296
-
Tidow H, Nissen P (2013) Structural diversity of calmodulin binding to its target sites. FEBS J 280(21):5551-5565, 10.1111/febs.12296.
-
(2013)
FEBS J
, vol.280
, Issue.21
, pp. 5551-5565
-
-
Tidow, H.1
Nissen, P.2
-
2
-
-
1942496481
-
Calmodulin's flexibility allows for promiscuity in its interactions with target proteins and peptides
-
Yamniuk AP, Vogel HJ (2004) Calmodulin's flexibility allows for promiscuity in its interactions with target proteins and peptides. Mol Biotechnol 27(1):33-57.
-
(2004)
Mol Biotechnol
, vol.27
, Issue.1
, pp. 33-57
-
-
Yamniuk, A.P.1
Vogel, H.J.2
-
3
-
-
22344451979
-
Single-Molecule tracking of submillisecond domain motion in calmodulin
-
Slaughter BD, Bieber-Urbauer RJ, Johnson CK (2005) Single-Molecule tracking of submillisecond domain motion in calmodulin. J Phys Chem B 109(26):12658-12662.
-
(2005)
J Phys Chem B
, vol.109
, Issue.26
, pp. 12658-12662
-
-
Slaughter, B.D.1
Bieber-Urbauer, R.J.2
Johnson, C.K.3
-
4
-
-
68349084565
-
Modulation of calmodulin plasticity by the effect of macromolecular crowding
-
Homouz D, Sanabria H, Waxham MN, Cheung MS (2009) Modulation of calmodulin plasticity by the effect of macromolecular crowding. J Mol Biol 391(5):933-943.
-
(2009)
J Mol Biol
, vol.391
, Issue.5
, pp. 933-943
-
-
Homouz, D.1
Sanabria, H.2
Waxham, M.N.3
Cheung, M.S.4
-
5
-
-
79960962805
-
The effect of macromolecular crowding, ionic strength and calcium binding on calmodulin dynamics
-
Wang Q, Liang KC, Czader A, Waxham MN, Cheung MS (2011) The effect of macromolecular crowding, ionic strength and calcium binding on calmodulin dynamics. PLOS Comput Biol 7(7):e1002114.
-
(2011)
PLOS Comput Biol
, vol.7
, Issue.7
-
-
Wang, Q.1
Liang, K.C.2
Czader, A.3
Waxham, M.N.4
Cheung, M.S.5
-
6
-
-
83055186781
-
Transient, sparsely populated compact states of apo and calcium-Loaded calmodulin probed by paramagnetic relaxation enhancement: Interplay of conformational selection and induced fit
-
Anthis NJ, Doucleff M, Clore GM (2011) Transient, sparsely populated compact states of apo and calcium-Loaded calmodulin probed by paramagnetic relaxation enhancement: Interplay of conformational selection and induced fit. J Am Chem Soc 133(46):18966-18974.
-
(2011)
J Am Chem Soc
, vol.133
, Issue.46
, pp. 18966-18974
-
-
Anthis, N.J.1
Doucleff, M.2
Clore, G.M.3
-
7
-
-
0001289724
-
Einfluss der Configuration auf die Wirkung der Enzyme [Configuration of the influence on the action of enzymes]
-
1894 German
-
Fischer E (1894) Einfluss der Configuration auf die Wirkung der Enzyme [Configuration of the influence on the action of enzymes]. Ber Dtsch Chem Ges 27:2984-2993. German.
-
Ber Dtsch Chem Ges
, vol.27
, pp. 2984-2993
-
-
Fischer, E.1
-
8
-
-
0001858251
-
Application of a theory of enzyme specificity of protein synthesis
-
Koshland DEJ (1958) Application of a theory of enzyme specificity of protein synthesis. Proc Natl Acad Sci USA 44(2):98-104.
-
(1958)
Proc Natl Acad Sci USA
, vol.44
, Issue.2
, pp. 98-104
-
-
Koshland, D.E.J.1
-
9
-
-
78651189765
-
On the nature of allosteric transitions: A plausible model
-
Monod J, Wyman J, Changeux JP (1965) On the nature of allosteric transitions: A plausible model. J Mol Biol 12:88-118.
-
(1965)
J Mol Biol
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
10
-
-
0033056708
-
Folding funnels, binding funnels, and protein function
-
Tsai CJ, Kumar S, Ma BY, Nussinov R (1999) Folding funnels, binding funnels, and protein function. Protein Sci 8(6):1181-1190.
-
(1999)
Protein Sci
, vol.8
, Issue.6
, pp. 1181-1190
-
-
Tsai, C.J.1
Kumar, S.2
Ma, B.Y.3
Nussinov, R.4
-
11
-
-
0033784534
-
Induced fit in RNA-Protein recognition
-
Williamson JR (2000) Induced fit in RNA-Protein recognition. Nat Struct Biol 7(10): 834-837.
-
(2000)
Nat Struct Biol
, vol.7
, Issue.10
, pp. 834-837
-
-
Williamson, J.R.1
-
12
-
-
0034255123
-
Speeding molecular recognition by using the folding funnel: The fly-Casting mechanism
-
Shoemaker BA, Portman JJ, Wolynes PG (2000) Speeding molecular recognition by using the folding funnel: The fly-Casting mechanism. Proc Natl Acad Sci USA 97(16): 8868-8873.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.16
, pp. 8868-8873
-
-
Shoemaker, B.A.1
Portman, J.J.2
Wolynes, P.G.3
-
14
-
-
84879543236
-
Quantifying the topography of the intrinsic energy landscape of flexible biomolecular recognition
-
Chu X, Gan L, Wang E, Wang J (2013) Quantifying the topography of the intrinsic energy landscape of flexible biomolecular recognition. Proc Natl Acad Sci USA 110(26):E2342-E2351.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.26
, pp. 2342-2351
-
-
Chu, X.1
Gan, L.2
Wang, E.3
Wang, J.4
-
15
-
-
0032749078
-
Intrinsically unstructured proteins: Re-Assessing the protein structure-Function paradigm
-
Wright PE, Dyson HJ (1999) Intrinsically unstructured proteins: Re-Assessing the protein structure-Function paradigm. J Mol Biol 293(2):321-331.
-
(1999)
J Mol Biol
, vol.293
, Issue.2
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
16
-
-
0035022941
-
Intrinsically disordered protein
-
Dunker AK, et al. (2001) Intrinsically disordered protein. J Mol Graph Model 19(1): 26-59.
-
(2001)
J Mol Graph Model
, vol.19
, Issue.1
, pp. 26-59
-
-
Dunker, A.K.1
-
17
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
Uversky VN (2002) Natively unfolded proteins: A point where biology waits for physics. Protein Sci 11(4):739-756.
-
(2002)
Protein Sci
, vol.11
, Issue.4
, pp. 739-756
-
-
Uversky, V.N.1
-
18
-
-
0032504199
-
A mechanism for calmodulin (CaM) trapping by CaM-Kinase II defined by a family of CaM-Binding peptides
-
Waxham MN, Tsai AL, Putkey JA (1998) A mechanism for calmodulin (CaM) trapping by CaM-Kinase II defined by a family of CaM-Binding peptides. J Biol Chem 273(28): 17579-17584.
-
(1998)
J Biol Chem
, vol.273
, Issue.28
, pp. 17579-17584
-
-
Waxham, M.N.1
Tsai, A.L.2
Putkey, J.A.3
-
19
-
-
80051664755
-
Fast methionine-Based solution structure determination of calcium-Calmodulin complexes
-
Gifford JL, Ishida H, Vogel HJ (2011) Fast methionine-Based solution structure determination of calcium-Calmodulin complexes. J Biomol NMR 50(1):71-81.
-
(2011)
J Biomol NMR
, vol.50
, Issue.1
, pp. 71-81
-
-
Gifford, J.L.1
Ishida, H.2
Vogel, H.J.3
-
20
-
-
0027759276
-
Modulation of calmodulin plasticity in molecular recognition on the basis of x-Ray structures
-
Meador WE, Means AR, Quiocho FA (1993) Modulation of calmodulin plasticity in molecular recognition on the basis of x-Ray structures. Science 262(5140):1718-1721.
-
(1993)
Science
, vol.262
, Issue.5140
, pp. 1718-1721
-
-
Meador, W.E.1
Means, A.R.2
Quiocho, F.A.3
-
21
-
-
0035830963
-
Protein-Protein association: Investigation of factors influencing association rates by Brownian dynamics simulations
-
Gabdoulline RR, Wade RC (2001) Protein-Protein association: Investigation of factors influencing association rates by Brownian dynamics simulations. J Mol Biol 306(5): 1139-1155.
-
(2001)
J Mol Biol
, vol.306
, Issue.5
, pp. 1139-1155
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
22
-
-
33846847968
-
Prediction of protein-Protein association rates from a transition-State theory
-
Alsallaq R, Zhou HX (2007) Prediction of protein-Protein association rates from a transition-State theory. Structure 15(2):215-224.
-
(2007)
Structure
, vol.15
, Issue.2
, pp. 215-224
-
-
Alsallaq, R.1
Zhou, H.X.2
-
23
-
-
0344500752
-
Computer simulation of protein-Protein association kinetics: Acetylcholinesterase-Fasciculin
-
Elcock AH, Gabdoulline RR, Wade RC, McCammon JA (1999) Computer simulation of protein-Protein association kinetics: Acetylcholinesterase- Fasciculin. J Mol Biol 291(1): 149-162.
-
(1999)
J Mol Biol
, vol.291
, Issue.1
, pp. 149-162
-
-
Elcock, A.H.1
Gabdoulline, R.R.2
Wade, R.C.3
McCammon, J.A.4
-
25
-
-
79955570145
-
Multi-Scaled explorations of binding-Induced folding of intrinsically disordered protein inhibitor IA3 to its target enzyme
-
Wang J, et al. (2011) Multi-Scaled explorations of binding-Induced folding of intrinsically disordered protein inhibitor IA3 to its target enzyme. PLOS Comput Biol 7(4):e1001118.
-
(2011)
PLOS Comput Biol
, vol.7
, Issue.4
-
-
Wang, J.1
-
26
-
-
84864578471
-
Importance of electrostatic interactions in the association of intrinsically disordered histone chaperone Chz1 and histone H2A.Z-H2B
-
Chu X, et al. (2012) Importance of electrostatic interactions in the association of intrinsically disordered histone chaperone Chz1 and histone H2A.Z-H2B. PLOS Comput Biol 8(7):e1002608.
-
(2012)
PLOS Comput Biol
, vol.8
, Issue.7
-
-
Chu, X.1
-
27
-
-
28844466824
-
Slow protein conformational dynamics from multiple experimental structures: The helix/sheet transition of arc repressor
-
Best RB, Chen YG, Hummer G (2005) Slow protein conformational dynamics from multiple experimental structures: The helix/sheet transition of arc repressor. Structure 13(12):1755-1763.
-
(2005)
Structure
, vol.13
, Issue.12
, pp. 1755-1763
-
-
Best, R.B.1
Chen, Y.G.2
Hummer, G.3
-
28
-
-
33747065536
-
Multiple-Basin energy landscapes for large-Amplitude conformational motions of proteins: Structure-Based molecular dynamics simulations
-
Okazaki K, Koga N, Takada S, Onuchic JN, Wolynes PG (2006) Multiple-Basin energy landscapes for large-Amplitude conformational motions of proteins: Structure-Based molecular dynamics simulations. Proc Natl Acad Sci USA 103(32):11844-11849.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.32
, pp. 11844-11849
-
-
Okazaki, K.1
Koga, N.2
Takada, S.3
Onuchic, J.N.4
Wolynes, P.G.5
-
29
-
-
49649084492
-
Dynamic energy landscape view of coupled binding and protein conformational change: Induced-Fit versus population-Shift mechanisms
-
Okazaki KI, Takada S (2008) Dynamic energy landscape view of coupled binding and protein conformational change: Induced-Fit versus population-Shift mechanisms. Proc Natl Acad Sci USA 105(32):11182-11187.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.32
, pp. 11182-11187
-
-
Okazaki, K.I.1
Takada, S.2
-
30
-
-
84859455527
-
Structure-Based model of allostery predicts coupling between distant sites
-
Weinkam P, Pons J, Sali A (2012) Structure-Based model of allostery predicts coupling between distant sites. Proc Natl Acad Sci USA 109(13):4875-4880.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.13
, pp. 4875-4880
-
-
Weinkam, P.1
Pons, J.2
Sali, A.3
-
31
-
-
33846847773
-
Conformational transitions of adenylate kinase: Switching by cracking
-
Whitford PC, Miyashita O, Levy Y, Onuchic JN (2007) Conformational transitions of adenylate kinase: Switching by cracking. J Mol Biol 366(5):1661-1671.
-
(2007)
J Mol Biol
, vol.366
, Issue.5
, pp. 1661-1671
-
-
Whitford, P.C.1
Miyashita, O.2
Levy, Y.3
Onuchic, J.N.4
-
32
-
-
41849107614
-
Single molecule conformational dynamics of adenylate kinase: Energy landscape, structural correlations, and transition state ensembles
-
Lu Q, Wang J (2008) Single molecule conformational dynamics of adenylate kinase: Energy landscape, structural correlations, and transition state ensembles. J Am Chem Soc 130(14):4772-4783.
-
(2008)
J Am Chem Soc
, vol.130
, Issue.14
, pp. 4772-4783
-
-
Lu, Q.1
Wang, J.2
-
33
-
-
84865350201
-
Coarse-Grained simulations of protein-Protein association: An energy landscape perspective
-
Ravikumar KM, Huang W, Yang S (2012) Coarse-Grained simulations of protein-Protein association: An energy landscape perspective. Biophys J 103(4):837-845.
-
(2012)
Biophys J
, vol.103
, Issue.4
, pp. 837-845
-
-
Ravikumar, K.M.1
Huang, W.2
Yang, S.3
-
34
-
-
60549089572
-
Inherent flexibility determines the transition mechanisms of the EF-Hands of calmodulin
-
Tripathi S, Portman JJ (2009) Inherent flexibility determines the transition mechanisms of the EF-Hands of calmodulin. Proc Natl Acad Sci USA 106(7):2104-2109.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.7
, pp. 2104-2109
-
-
Tripathi, S.1
Portman, J.J.2
-
35
-
-
2342471328
-
Simulation of an ensemble of conformational transitions in a united-Residue model of calmodulin
-
Zuckerman DM (2004) Simulation of an ensemble of conformational transitions in a united-Residue model of calmodulin. J Phys Chem B 108(16):5127-5137.
-
(2004)
J Phys Chem B
, vol.108
, Issue.16
, pp. 5127-5137
-
-
Zuckerman, D.M.1
-
36
-
-
0242368163
-
Exploring the interplay between topology and secondary structural formation in the protein folding problem
-
Cheung MS, Finke JM, Callahan B, Onuchic JN (2003) Exploring the interplay between topology and secondary structural formation in the protein folding problem. J Phys Chem B 107(40):11193-11200.
-
(2003)
J Phys Chem B
, vol.107
, Issue.40
, pp. 11193-11200
-
-
Cheung, M.S.1
Finke, J.M.2
Callahan, B.3
Onuchic, J.N.4
-
37
-
-
0001166734
-
The theory of electrolytes. I. Lowering of freezing point and related phenomena
-
Debye P, Hückel E (1923) The theory of electrolytes. I. Lowering of freezing point and related phenomena. Phys Z 24:185-206.
-
(1923)
Phys Z
, vol.24
, pp. 185-206
-
-
Debye, P.1
Hückel, E.2
-
38
-
-
0027052523
-
Calmodulin structure refined at 1.7 A resolution
-
Chattopadhyaya R, Meador WE, Means AR, Quiocho FA (1992) Calmodulin structure refined at 1.7 A resolution. J Mol Biol 228(4):1177-1192.
-
(1992)
J Mol Biol
, vol.228
, Issue.4
, pp. 1177-1192
-
-
Chattopadhyaya, R.1
Meador, W.E.2
Means, A.R.3
Quiocho, F.A.4
-
39
-
-
0024334344
-
Changes in the structure of calmodulin induced by a peptide based on the calmodulin-Binding domain of myosin light chain kinase
-
Heidorn DB, et al. (1989) Changes in the structure of calmodulin induced by a peptide based on the calmodulin-Binding domain of myosin light chain kinase. Biochemistry 28(16):6757-6764.
-
(1989)
Biochemistry
, vol.28
, Issue.16
, pp. 6757-6764
-
-
Heidorn, D.B.1
-
40
-
-
30344440627
-
-
University of California San Francisco)
-
Case D, et al. (2008) AMBER 10 (University of California, San Francisco).
-
(2008)
AMBER
, vol.10
-
-
Case, D.1
-
41
-
-
36549102274
-
Brownian dynamics simulation of diffusion-Influenced bimolecular reactions
-
Northrup SH, Allison SA, McCammon JA (1984) Brownian dynamics simulation of diffusion-Influenced bimolecular reactions. J Chem Phys 80(4):1517-1526.
-
(1984)
J Chem Phys
, vol.80
, Issue.4
, pp. 1517-1526
-
-
Northrup, S.H.1
Allison, S.A.2
McCammon, J.A.3
-
42
-
-
3442896792
-
Single-Molecule resonance energy transfer and fluorescence correlation spectroscopy of calmodulin in solution
-
Slaughter BD, Allen MW, Unruh JR, Urbauer RJB, Johnson CK (2004) Single-Molecule resonance energy transfer and fluorescence correlation spectroscopy of calmodulin in solution. J Phys Chem B 108(29):10388-10397.
-
(2004)
J Phys Chem B
, vol.108
, Issue.29
, pp. 10388-10397
-
-
Slaughter, B.D.1
Allen, M.W.2
Unruh, J.R.3
Urbauer, R.J.B.4
Johnson, C.K.5
-
43
-
-
0024040620
-
Brownian dynamics of cytochrome c and cytochrome c peroxidase association
-
Northrup SH, Boles JO, Reynolds JCL (1988) Brownian dynamics of cytochrome c and cytochrome c peroxidase association. Science 241(4861):67-70.
-
(1988)
Science
, vol.241
, Issue.4861
, pp. 67-70
-
-
Northrup, S.H.1
Boles, J.O.2
Reynolds, J.C.L.3
-
44
-
-
0030891436
-
Simulation of the diffusional association of barnase and barstar
-
Gabdoulline RR, Wade RC (1997) Simulation of the diffusional association of barnase and barstar. Biophys J 72(5):1917-1929.
-
(1997)
Biophys J
, vol.72
, Issue.5
, pp. 1917-1929
-
-
Gabdoulline, R.R.1
Wade, R.C.2
|