-
1
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
-
DOI 10.1006/jmbi.1999.3110
-
P.E. Wright, and H.J. Dyson Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm J. Mol. Biol. 293 1999 321 331 (Pubitemid 29516173)
-
(1999)
Journal of Molecular Biology
, vol.293
, Issue.2
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
3
-
-
37749053887
-
Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions
-
P. Tompa, and M. Fuxreiter Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions Trends Biochem. Sci. 33 2008 2 8
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 2-8
-
-
Tompa, P.1
Fuxreiter, M.2
-
4
-
-
84863116271
-
Understanding pre-structured motifs (PreSMos) in intrinsically unfolded proteins
-
S.-H. Lee, D.-H. Kim, J.J. Han, E.-J. Cha, J.-E. Lim, Y.-J. Cho, C. Lee, and K.-H. Han Understanding pre-structured motifs (PreSMos) in intrinsically unfolded proteins Curr. Protein Pept. Sci. 13 2012 34 54
-
(2012)
Curr. Protein Pept. Sci.
, vol.13
, pp. 34-54
-
-
Lee, S.-H.1
Kim, D.-H.2
Han, J.J.3
Cha, E.-J.4
Lim, J.-E.5
Cho, Y.-J.6
Lee, C.7
Han, K.-H.8
-
5
-
-
0034703040
-
Local structural elements in the mostly unstructured transcriptional activation domain of human p53
-
DOI 10.1074/jbc.M003107200
-
H. Lee, K.H. Mok, R. Muhandiram, K.-H. Park, J.-E. Suk, D.-H. Kim, J. Chang, Y.C. Sung, K.Y. Choi, and K.-H. Han Local structural elements in the mostly unstructured transcriptional activation domain of human p53 J. Biol. Chem. 275 2000 29426 29432 (Pubitemid 32043817)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.38
, pp. 29426-29432
-
-
Lee, H.1
Mok, K.H.2
Muhandiram, R.3
Park, K.-H.4
Suk, J.-E.5
Kim, D.-H.6
Chang, J.7
Sung, Y.C.8
Choi, K.Y.9
Han, K.-H.10
-
6
-
-
0031821410
-
The interaction of eIF4E with 4E-BP1 is an induced fit to a completely disordered protein
-
C.M. Fletcher, and G. Wagner The interaction of eIF4E with 4E-BP1 is an induced fit to a completely disordered protein Protein Sci. 7 1998 1639 1642 (Pubitemid 28331286)
-
(1998)
Protein Science
, vol.7
, Issue.7
, pp. 1639-1642
-
-
Fletcher, C.M.1
Wagner, G.2
-
7
-
-
0021326226
-
DARPP-32, a dopamine- and adenosine 3':5'-monophosphate-regulated phosphoprotein enriched in dopamine-innervated brain regions. II. Purification and characterization of the phosphoprotein from bovine caudate nucleus
-
H. Hemmings, A. Nairn, D. Aswad, and P. Greengard DARPP-32, a dopamine- and adenosine 3′:5′-monophosphate-regulated phosphoprotein enriched in dopamine-innervated brain regions. II. Purification and characterization of the phosphoprotein from bovine caudate nucleus J. Neurosci. 4 1984 99 110 (Pubitemid 14198291)
-
(1984)
Journal of Neuroscience
, vol.4
, Issue.1
, pp. 99-110
-
-
Hemmings Jr., H.C.1
Nairn, A.C.2
Aswad, D.W.3
Greengard, P.4
-
8
-
-
0028785802
-
Prothymosin α: A biologically active protein with random coil conformation
-
K. Gast, H. Damaschun, K. Eckert, K. Schulze-Forster, H.R. Maurer, M. Mueller-Frohne, D. Zirwer, J. Czarnecki, and G. Damaschun Prothymosin α: a biologically active protein with random coil conformation Biochemistry 34 1995 13211 13218
-
(1995)
Biochemistry
, vol.34
, pp. 13211-13218
-
-
Gast, K.1
Damaschun, H.2
Eckert, K.3
Schulze-Forster, K.4
Maurer, H.R.5
Mueller-Frohne, M.6
Zirwer, D.7
Czarnecki, J.8
Damaschun, G.9
-
9
-
-
72449139985
-
Intrinsically disordered proteins and their environment: Effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding
-
V. Uversky Intrinsically disordered proteins and their environment: effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding Protein J. 28 2009 305 325
-
(2009)
Protein J.
, vol.28
, pp. 305-325
-
-
Uversky, V.1
-
10
-
-
79951905332
-
Multitude of binding modes attainable by intrinsically disordered proteins: A portrait gallery of disorder-based complexes
-
V.N. Uversky Multitude of binding modes attainable by intrinsically disordered proteins: a portrait gallery of disorder-based complexes Chem. Soc. Rev. 40 2011 1623 1634
-
(2011)
Chem. Soc. Rev.
, vol.40
, pp. 1623-1634
-
-
Uversky, V.N.1
-
11
-
-
84878627017
-
Intrinsic disorder-based protein interactions and their modulators
-
V.N. Uversky Intrinsic disorder-based protein interactions and their modulators Curr. Pharm. Des. 23 2013 4191 4213
-
(2013)
Curr. Pharm. Des.
, vol.23
, pp. 4191-4213
-
-
Uversky, V.N.1
-
12
-
-
33644673642
-
Structural details on mdm2-p53 interaction
-
DOI 10.1074/jbc.M508578200
-
S.-W. Chi, S.-H. Lee, D.-H. Kim, M.-J. Ahn, J.-S. Kim, J.-Y. Woo, T. Torizawa, M. Kainosho, and K.-H. Han Structural details on mdm2-p53 interaction J. Biol. Chem. 280 2005 38795 38802 (Pubitemid 43853782)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.46
, pp. 38795-38802
-
-
Chi, S.-W.1
Lee, S.-H.2
Kim, D.-H.3
Ahn, M.-J.4
Kim, J.-S.5
Woo, J.-Y.6
Torizawa, T.7
Kainosho, M.8
Han, K.-H.9
-
13
-
-
33745214419
-
Structure of the Tfb1/p53 complex: Insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53
-
P. Di Lello, L.M.M. Jenkins, T.N. Jones, B.D. Nguyen, T. Hara, H. Yamaguchi, J.D. Dikeakos, E. Appella, P. Legault, and J.G. Omichinski Structure of the Tfb1/p53 complex: insights into the interaction between the p62/Tfb1 subunit of TFIIH and the activation domain of p53 Mol. Cell 22 2006 731 740
-
(2006)
Mol. Cell
, vol.22
, pp. 731-740
-
-
Di Lello, P.1
Jenkins, L.M.M.2
Jones, T.N.3
Nguyen, B.D.4
Hara, T.5
Yamaguchi, H.6
Dikeakos, J.D.7
Appella, E.8
Legault, P.9
Omichinski, J.G.10
-
14
-
-
27344449049
-
Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A
-
DOI 10.1073/pnas.0504614102
-
E. Bochkareva, L. Kaustov, A. Ayed, G.-S. Yi, Y. Lu, A. Pineda-Lucena, J.C.C. Liao, A.L. Okorokov, J. Milner, C.H. Arrowsmith, and A. Bochkarev Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A Proc. Natl. Acad. Sci. U. S. A. 102 2005 15412 15417 (Pubitemid 41528071)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15412-15417
-
-
Bochkareva, E.1
Kaustov, L.2
Ayed, A.3
Yi, G.-S.4
Lu, Y.5
Pineda-Lucena, A.6
Liao, J.C.C.7
Okorokov, A.L.8
Milner, J.9
Arrowsmith, C.H.10
Bochkarev, A.11
-
15
-
-
10744233648
-
Structural mechanism of the bromodomain of the coactivator cbp in p53 transcriptional activation
-
DOI 10.1016/S1097-2765(03)00528-8
-
S. Mujtaba, Y. He, L. Zeng, S. Yan, O. Plotnikova, Sachchidanand, R. Sanchez, N.J. Zeleznik-Le, Z. Ronai, and M.-M. Zhou Structural mechanism of the bromodomain of the coactivator CBP in p53 transcriptional activation Mol. Cell 13 2004 251 263 (Pubitemid 38183271)
-
(2004)
Molecular Cell
, vol.13
, Issue.2
, pp. 251-263
-
-
Mujtaba, S.1
He, Y.2
Zeng, L.3
Yan, S.4
Plotnikova, O.5
Sachchidanand6
Sanchez, R.7
Zeleznik-Le, N.J.8
Ronai, Z.9
Zhou, M.-M.10
-
16
-
-
9244247669
-
Regulation of p53 activity through lysine methylation
-
DOI 10.1038/nature03117
-
S. Chuikov, J.K. Kurash, J.R. Wilson, B. Xiao, N. Justin, G.S. Ivanov, K. Mckinney, P. Tempst, C. Prives, S.J. Gamblin, N.A. Barlev, and D. Reinberg Regulation of p53 activity through lysine methylation Nature 432 2004 353 360 (Pubitemid 39551664)
-
(2004)
Nature
, vol.432
, Issue.7015
, pp. 353-360
-
-
Chuikov, S.1
Kurash, J.K.2
Wilson, J.R.3
Xiao, B.4
Justin, N.5
Ivanov, G.S.6
McKinney, K.7
Tempst, P.8
Prives, C.9
Gamblin, S.J.10
Barlev, N.A.11
Reinberg, D.12
-
17
-
-
0036753953
-
Structure of a Sir2 enzyme bound to an acetylated p53 peptide
-
DOI 10.1016/S1097-2765(02)00628-7
-
J.L. Avalos, I. Celic, S. Muhammad, M.S. Cosgrove, J.D. Boeke, and C. Wolberger Structure of a Sir2 enzyme bound to an acetylated p53 peptide Mol. Cell 10 2002 523 535 (Pubitemid 35291068)
-
(2002)
Molecular Cell
, vol.10
, Issue.3
, pp. 523-535
-
-
Avalos, J.L.1
Celic, I.2
Muhammad, S.3
Cosgrove, M.S.4
Boeke, J.D.5
Wolberger, C.6
-
18
-
-
0347520938
-
Specificity determinants of recruitment peptides bound to phospho-CDK2/cyclin A
-
DOI 10.1021/bi0268910
-
E.D. Lowe, I. Tews, K.Y. Cheng, N.R. Brown, S. Gul, M.E.M. Noble, S.J. Gamblin, and L.N. Johnson Specificity determinants of recruitment peptides bound to phospho-CDK2/Cyclin A Biochemistry 41 2002 15625 15634 (Pubitemid 36062467)
-
(2002)
Biochemistry
, vol.41
, Issue.52
, pp. 15625-15634
-
-
Lowe, E.D.1
Tews, I.2
Cheng, K.Y.3
Brown, N.R.4
Gul, S.5
Noble, M.E.M.6
Gamblin, S.J.7
Johnson, L.N.8
-
19
-
-
69449083742
-
Multiple hTAFII31-binding motifs in the intrinsically unfolded transcriptional activation domain of VP16
-
D.-H. Kim, S.-H. Lee, K.H. Nam, S.-W. Chi, I. Chang, and K.-H. Han Multiple hTAFII31-binding motifs in the intrinsically unfolded transcriptional activation domain of VP16 BMB Rep. 42 2009 411 417
-
(2009)
BMB Rep.
, vol.42
, pp. 411-417
-
-
Kim, D.-H.1
Lee, S.-H.2
Nam, K.H.3
Chi, S.-W.4
Chang, I.5
Han, K.-H.6
-
20
-
-
12344268841
-
Structural properties of the promiscuous VP16 activation domain
-
DOI 10.1021/bi0482912
-
H.R.A. Jonker, R.W. Wechselberger, R. Boelens, G.E. Folkers, and R. Kaptein Structural properties of the promiscuous VP16 activation domain Biochemistry 44 2005 827 839 (Pubitemid 40129643)
-
(2005)
Biochemistry
, vol.44
, Issue.3
, pp. 827-839
-
-
Jonker, H.R.A.1
Wechselberger, R.W.2
Boelens, R.3
Folkers, G.E.4
Kaptein, R.5
-
21
-
-
34748861981
-
Pre-structured motifs in the natively unstructured preS1 surface antigen of hepatitis B virus
-
DOI 10.1110/ps.072983507
-
S.-W. Chi, D.-H. Kim, S.-H. Lee, I. Chang, and K.-H. Han Pre-structured motifs in the natively unstructured preS1 surface antigen of hepatitis B virus Protein Sci. 16 2007 2108 2117 (Pubitemid 47481646)
-
(2007)
Protein Science
, vol.16
, Issue.10
, pp. 2108-2117
-
-
Chi, S.-W.1
Kim, D.-H.2
Lee, S.I.-H.3
Chang, I.4
Han, K.-H.5
-
22
-
-
84872862461
-
Proline: The distribution, frequency, positioning, and common functional roles of proline and poly proline sequences in the human proteome
-
A.A. Morgan, and E. Rubenstein Proline: the distribution, frequency, positioning, and common functional roles of proline and poly proline sequences in the human proteome PLoS ONE 8 2013 e53785
-
(2013)
PLoS ONE
, vol.8
, pp. 53785
-
-
Morgan, A.A.1
Rubenstein, E.2
-
23
-
-
0001422048
-
Positional preference of proline in α-helices
-
M.K. Kim, and Y.K. Kang Positional preference of proline in α-helices Protein Sci. 8 1999 1492 1499
-
(1999)
Protein Sci.
, vol.8
, pp. 1492-1499
-
-
Kim, M.K.1
Kang, Y.K.2
-
24
-
-
0031917176
-
Helix capping
-
R. Aurora, and G.D. Rose Helix capping Protein Sci. 7 1998 21 38 (Pubitemid 28133743)
-
(1998)
Protein Science
, vol.7
, Issue.1
, pp. 21-38
-
-
Aurora, R.1
Rose, G.D.2
-
25
-
-
77951645923
-
Sequence determinants of compaction in intrinsically disordered proteins
-
J.A. Marsh, and J.D. Forman-Kay Sequence determinants of compaction in intrinsically disordered proteins Biophys. J. 98 2010 2383 2390
-
(2010)
Biophys. J.
, vol.98
, pp. 2383-2390
-
-
Marsh, J.A.1
Forman-Kay, J.D.2
-
26
-
-
84886950258
-
The alphabet of intrinsic disorder i
-
Intrinsically Disordered Proteins
-
F.-X. Theillet, L. Kalmar, P. Tompa, K.-H. Han, P. Selenko, A.K. Dunker, G.W. Daughdrill, and V.N. Uversky The alphabet of intrinsic disorder I Act Like a Pro: On the Abundance and Roles of Proline Residues in Intrinsically Disordered Proteins Intrinsically Disordered Proteins 1 2013 e24360
-
(2013)
Act Like A Pro: On the Abundance and Roles of Proline Residues in Intrinsically Disordered Proteins
, vol.1
, pp. 24360
-
-
Theillet, F.-X.1
Kalmar, L.2
Tompa, P.3
Han, K.-H.4
Selenko, P.5
Dunker, A.K.6
Daughdrill, G.W.7
Uversky, V.N.8
-
27
-
-
58049216739
-
Structural and dynamic characterization of intrinsically disordered human securin by NMR spectroscopy
-
V. Csizmok, I.C. Felli, P. Tompa, L. Banci, and I. Bertini Structural and dynamic characterization of intrinsically disordered human securin by NMR spectroscopy J. Am. Chem. Soc. 130 2008 16873 16879
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 16873-16879
-
-
Csizmok, V.1
Felli, I.C.2
Tompa, P.3
Banci, L.4
Bertini, I.5
-
28
-
-
56749172641
-
Detailed structural characterization of unbound protein phosphatase 1 inhibitors
-
B. Dancheck, A.C. Nairn, and W. Peti Detailed structural characterization of unbound protein phosphatase 1 inhibitors Biochemistry 47 2008 12346 12356
-
(2008)
Biochemistry
, vol.47
, pp. 12346-12356
-
-
Dancheck, B.1
Nairn, A.C.2
Peti, W.3
-
29
-
-
56749172176
-
1H, 13C, and 15 N resonance assignment of the cAMP-regulated phosphoprotein endosulfine-alpha in free and micelle-bound states
-
J. Boettcher, K. Hartman, D. Ladror, Z. Qi, W. Woods, J. George, and C. Rienstra 1H, 13C, and 15 N resonance assignment of the cAMP-regulated phosphoprotein endosulfine-alpha in free and micelle-bound states Biomol. NMR Assign. 1 2007 167 169
-
(2007)
Biomol. NMR Assign.
, vol.1
, pp. 167-169
-
-
Boettcher, J.1
Hartman, K.2
Ladror, D.3
Qi, Z.4
Woods, W.5
George, J.6
Rienstra, C.7
-
30
-
-
56749167993
-
Membrane-induced folding of the cAMP-regulated phosphoprotein endosulfine-α
-
J.M. Boettcher, K.L. Hartman, D.T. Ladror, Z. Qi, W.S. Woods, J.M. George, and C.M. Rienstra Membrane-induced folding of the cAMP-regulated phosphoprotein endosulfine-α Biochemistry 47 2008 12357 12364
-
(2008)
Biochemistry
, vol.47
, pp. 12357-12364
-
-
Boettcher, J.M.1
Hartman, K.L.2
Ladror, D.T.3
Qi, Z.4
Woods, W.S.5
George, J.M.6
Rienstra, C.M.7
-
31
-
-
0032479055
-
133-phosphorylated and non- phosphorylated forms of the kinase inducible transactivation domain of CREB
-
DOI 10.1016/S0014-5793(98)00680-2, PII S0014579398006802
-
I. Radhakrishnan, G.C. Pérez-Alvarado, H.J. Dyson, and P.E. Wright Conformational preferences in the Ser133-phosphorylated and non-phosphorylated forms of the kinase inducible transactivation domain of CREB FEBS Lett. 430 1998 317 322 (Pubitemid 28337936)
-
(1998)
FEBS Letters
, vol.430
, Issue.3
, pp. 317-322
-
-
Radhakrishnan, I.1
Perez-Alvarado, G.C.2
Dyson, H.J.3
Wright, P.E.4
-
32
-
-
0344936739
-
Solution structure of the KIX domain of CBP bound to the transactivation domain of CREB: A model for activator:coactivator interactions
-
DOI 10.1016/S0092-8674(00)80463-8
-
I. Radhakrishnan, G.C. Pérez-Alvarado, D. Parker, H.J. Dyson, M.R. Montminy, and P.E. Wright Solution structure of the KIX domain of CBP bound to the transactivation domain of CREB: a model for activator:coactivator interactions Cell 91 1997 741 752 (Pubitemid 28007731)
-
(1997)
Cell
, vol.91
, Issue.6
, pp. 741-752
-
-
Radhakrishnan, I.1
Perez-Alvarado, G.C.2
Parker, D.3
Dyson, H.J.4
Montminy, M.R.5
Wright, P.E.6
-
33
-
-
34250815165
-
Characterization of molecular recognition features, MoRFs, and their binding partners
-
DOI 10.1021/pr0701411
-
V. Vacic, C.J. Oldfield, A. Mohan, P. Radivojac, M.S. Cortese, V.N. Uversky, and A.K. Dunker Characterization of molecular recognition features, MoRFs, and their binding partners J. Proteome Res. 6 2007 2351 2366 (Pubitemid 46985123)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.6
, pp. 2351-2366
-
-
Vacic, V.1
Oldfield, C.J.2
Mohan, A.3
Radivojac, P.4
Cortese, M.S.5
Uversky, V.N.6
Dunker, A.K.7
-
34
-
-
24944546549
-
Coupled folding and binding with helix-forming molecular recognition elements
-
DOI 10.1021/bi050736e
-
C.J. Oldfield, Y. Cheng, M.S. Cortese, P. Romero, V.N. Uversky, and A.K. Dunker Coupled folding and binding with α-helix-forming molecular recognition elements Biochemistry 44 2005 12454 12470 (Pubitemid 41324337)
-
(2005)
Biochemistry
, vol.44
, Issue.37
, pp. 12454-12470
-
-
Oldfield, C.J.1
Cheng, Y.2
Cortese, M.S.3
Romero, P.4
Uversky, V.N.5
Dunker, A.K.6
-
35
-
-
33748456399
-
Analysis of Molecular Recognition Features (MoRFs)
-
DOI 10.1016/j.jmb.2006.07.087, PII S0022283606009831
-
A. Mohan, C.J. Oldfield, P. Radivojac, V. Vacic, M.S. Cortese, A.K. Dunker, and V.N. Uversky Analysis of molecular recognition features (MoRFs) J. Mol. Biol. 362 2006 1043 1059 (Pubitemid 44353519)
-
(2006)
Journal of Molecular Biology
, vol.362
, Issue.5
, pp. 1043-1059
-
-
Mohan, A.1
Oldfield, C.J.2
Radivojac, P.3
Vacic, V.4
Cortese, M.S.5
Dunker, A.K.6
Uversky, V.N.7
-
36
-
-
70149112207
-
-
University of California San Francisco
-
D.A. Case, T. Darden, T.E. Cheatham III, C. Simmerling, J. Wang, R.E. Duke, R. Luo, R.C. Walker, W. Zhang, and K.M. Merz AMBER10 2008 University of California San Francisco
-
(2008)
AMBER10
-
-
Case, D.A.1
Darden, T.2
Cheatham III, T.E.3
Simmerling, C.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
-
37
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
V. Hornak, R. Abel, A. Okur, B. Strockbine, A. Roitberg, and C. Simmerling Comparison of multiple Amber force fields and development of improved protein backbone parameters Proteins 65 2006 712 725 (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
38
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
DOI 10.1002/elps.1150181505
-
N. Guex, and M.C. Peitsch SWISS-MODEL and the Swiss-Pdb Viewer: An environment for comparative protein modeling Electrophoresis 18 1997 2714 2723 (Pubitemid 28059943)
-
(1997)
Electrophoresis
, vol.18
, Issue.15
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
39
-
-
33846823909
-
Particle mesh Ewald: An N·log(N) method for Ewald sums in large systems
-
T. Darden, D. York, and L. Pedersen Particle mesh Ewald: an N·log(N) method for Ewald sums in large systems J. Chem. Phys. 98 1993 10089
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
40
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
J.-P. Ryckaert, G. Ciccotti, and H.J.C. Berendsen Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes J. Comput. Phys. 23 1977 327 341
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
41
-
-
0021097529
-
How good are predictions of protein secondary structure?
-
W. Kabsch, and C. Sander How good are predictions of protein secondary structure? FEBS Lett. 155 1983 179 182
-
(1983)
FEBS Lett.
, vol.155
, pp. 179-182
-
-
Kabsch, W.1
Sander, C.2
-
44
-
-
34447539760
-
Composition profiler: A tool for discovery and visualization of amino acid composition differences
-
V. Vacic, V.N. Uversky, A.K. Dunker, and S. Lonardi Composition profiler: a tool for discovery and visualization of amino acid composition differences BMC Bioinforma. 8 2007 211
-
(2007)
BMC Bioinforma.
, vol.8
, pp. 211
-
-
Vacic, V.1
Uversky, V.N.2
Dunker, A.K.3
Lonardi, S.4
-
45
-
-
65249100143
-
Small-molecule inhibitors of the MDM2-p53 Protein-protein interaction to reactivate p53 function: A novel approach for cancer therapy
-
S. Shangary, and S. Wang Small-molecule inhibitors of the MDM2-p53 Protein-protein interaction to reactivate p53 function: a novel approach for cancer therapy Annu. Rev. Pharmacol. Toxicol. 49 2009 223 241
-
(2009)
Annu. Rev. Pharmacol. Toxicol.
, vol.49
, pp. 223-241
-
-
Shangary, S.1
Wang, S.2
-
46
-
-
0030575937
-
Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain
-
DOI 10.1126/science.274.5289.948
-
P.H. Kussie, S. Gorina, V. Marechal, B. Elenbaas, J. Moreau, A.J. Levine, and N.P. Pavletich Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain Science 274 1996 948 953 (Pubitemid 26398409)
-
(1996)
Science
, vol.274
, Issue.5289
, pp. 948-953
-
-
Kussie, P.H.1
Gorina, S.2
Marechal, V.3
Elenbaas, B.4
Moreau, J.5
Levine, A.J.6
Pavletich, N.P.7
-
47
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of alpha helices
-
J. Richardson, and D. Richardson Amino acid preferences for specific locations at the ends of alpha helices Science 240 1988 1648 1652
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.1
Richardson, D.2
-
48
-
-
0032846342
-
Stable proline box motif at the N-terminal end of helices
-
A.R. Viguera, and L. Serrano Stable proline box motif at the N-terminal end of α-helices Protein Sci. 8 1999 1733 1742 (Pubitemid 29430473)
-
(1999)
Protein Science
, vol.8
, Issue.9
, pp. 1733-1742
-
-
Viguera, A.R.1
Serrano, L.2
-
49
-
-
0025996871
-
Proline in α-helix: Stability and conformation studied by dynamics simulation
-
R.H. Yun, A. Anderson, and J. Hermans Proline in α-helix: stability and conformation studied by dynamics simulation Proteins 10 1991 219 228
-
(1991)
Proteins
, vol.10
, pp. 219-228
-
-
Yun, R.H.1
Anderson, A.2
Hermans, J.3
-
50
-
-
0027395368
-
Characterization of proline-containing helix (helix F model of bacteriorhodopsin) by molecular dynamics studies
-
DOI 10.1002/prot.340150105
-
R. Sankararamakrishnan, and S. Vishveshwara Characterization of proline-containing α-helix (helix F model of bacteriorhodopsin) by molecular dynamics studies Proteins 15 1993 26 41 (Pubitemid 23005595)
-
(1993)
Proteins: Structure, Function and Genetics
, vol.15
, Issue.1
, pp. 26-41
-
-
Sankararamakrishnan, R.1
Vishveshwara, S.2
-
51
-
-
0025059332
-
Conformational studies on peptides with proline in the right-handed helical region
-
R. Sankararamakrishnan, and S. Vishveshwara Conformational studies on peptides with proline in the right-handed α-helical region Biopolymers 30 1990 287 298 (Pubitemid 20331254)
-
(1990)
Biopolymers
, vol.30
, Issue.3-4
, pp. 287-298
-
-
Sankararamakrishnan, R.1
Vishveshwara, S.2
-
53
-
-
84866640683
-
Solution NMR structure and molecular dynamics simulations of murine 18.5-kDa myelin basic protein segment (S72-S107) in association with dodecylphosphocholine micelles
-
M.A.M. Ahmed, M. De Avila, E. Polverini, K. Bessonov, V.V. Bamm, and G. Harauz Solution NMR structure and molecular dynamics simulations of murine 18.5-kDa myelin basic protein segment (S72-S107) in association with dodecylphosphocholine micelles Biochemistry 51 2012 7475 7487
-
(2012)
Biochemistry
, vol.51
, pp. 7475-7487
-
-
Ahmed, M.A.M.1
De Avila, M.2
Polverini, E.3
Bessonov, K.4
Bamm, V.V.5
Harauz, G.6
-
54
-
-
78650619555
-
Conformational choreography of a molecular switch region in myelin basic protein - Molecular dynamics shows induced folding and secondary structure type conversion upon threonyl phosphorylation in both aqueous and membrane-associated environments
-
E. Polverini, E.P. Coll, D.P. Tieleman, and G. Harauz Conformational choreography of a molecular switch region in myelin basic protein - molecular dynamics shows induced folding and secondary structure type conversion upon threonyl phosphorylation in both aqueous and membrane-associated environments Biochim. Biophys. Acta 1808 2011 674 683
-
(2011)
Biochim. Biophys. Acta
, vol.1808
, pp. 674-683
-
-
Polverini, E.1
Coll, E.P.2
Tieleman, D.P.3
Harauz, G.4
-
55
-
-
80053539881
-
Conformational selection or induced fit? 50 years of debate resolved, F1000
-
J.-P. Changeux, and S. Edelstein Conformational selection or induced fit? 50 years of debate resolved, F1000 Biol. Rep. 3 2011 19
-
(2011)
Biol. Rep.
, vol.3
, pp. 19
-
-
Changeux, J.-P.1
Edelstein, S.2
-
56
-
-
0035451185
-
Structured disorder and conformational selection
-
DOI 10.1002/prot.1107
-
C.-J. Tsai, B. Ma, Y.Y. Sham, S. Kumar, and R. Nussinov Structured disorder and conformational selection Proteins 44 2001 418 427 (Pubitemid 32762067)
-
(2001)
Proteins: Structure, Function and Genetics
, vol.44
, Issue.4
, pp. 418-427
-
-
Tsai, C.-J.1
Buyong, M.2
Sham, Y.Y.3
Kumar, S.4
Nussinov, R.5
-
57
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
D.D. Boehr, R. Nussinov, and P.E. Wright The role of dynamic conformational ensembles in biomolecular recognition Nat. Chem. Biol. 5 2009 789 796
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
58
-
-
69549120472
-
Conformational selection or induced fit: A flux description of reaction mechanism
-
G.G. Hammes, Y.-C. Chang, and T.G. Oas Conformational selection or induced fit: a flux description of reaction mechanism Proc. Natl. Acad. Sci. U. S. A. 106 2009 13737 13741
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 13737-13741
-
-
Hammes, G.G.1
Chang, Y.-C.2
Oas, T.G.3
-
59
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
DOI 10.1038/nrm1589
-
H.J. Dyson, and P.E. Wright Intrinsically unstructured proteins and their functions Nat. Rev. Mol. Cell Biol. 6 2005 197 208 (Pubitemid 40314921)
-
(2005)
Nature Reviews Molecular Cell Biology
, vol.6
, Issue.3
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
60
-
-
0025782832
-
Proline kinks in transmembrane α-helices
-
G. Von Heijne Proline kinks in transmembrane α-helices J. Mol. Biol. 218 1991 499 503
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 499-503
-
-
Von Heijne, G.1
-
61
-
-
0036803243
-
Intrinsically unstructured proteins
-
DOI 10.1016/S0968-0004(02)02169-2, PII S0968000402021692
-
P. Tompa Intrinsically unstructured proteins Trends Biochem. Sci. 27 2002 527 533 (Pubitemid 35279598)
-
(2002)
Trends in Biochemical Sciences
, vol.27
, Issue.10
, pp. 527-533
-
-
Tompa, P.1
-
62
-
-
0025801502
-
Conserved positioning of proline residues in membrane-spanning helices of ion-channel proteins
-
D.N. Woolfson, R.J. Mortishire-Smith, and D.H. Williams Conserved positioning of proline residues in membrane-spanning helices of ion-channel proteins Biochem. Biophys. Res. Commun. 175 1991 733 737
-
(1991)
Biochem. Biophys. Res. Commun.
, vol.175
, pp. 733-737
-
-
Woolfson, D.N.1
Mortishire-Smith, R.J.2
Williams, D.H.3
-
64
-
-
0029089655
-
A hypothetical structural role for proline residues in the flanking segments of protein-protein interaction sites
-
R.M. Kini, and H.J. Evans A hypothetical structural role for proline residues in the flanking segments of protein-protein interaction sites Biochem. Biophys. Res. Commun. 212 1995 1115 1124
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.212
, pp. 1115-1124
-
-
Kini, R.M.1
Evans, H.J.2
|