Multiplex screening for blood-borne viral, bacterial, and protozoan parasites using an openarray platform

Journal of Molecular Diagnostics

Volumn 16, Issue 1, 2014, Pages 136-144

  Grigorenko, Elena ^a   Fisher, Carolyn ^b   Patel, Sunali ^a   Chancey, Caren ^b   Rios, Maria ^b   Nakhasi, Hira L ^b   Duncan, Robert C ^b  

^a Life Technologies   (United States)

^b CENTER FOR BIOLOGICS EVALUATION AND RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

ARTICLE; BLOOD SAMPLING; BLOODBORNE BACTERIUM; ERYTHROCYTE; FALSE POSITIVE RESULT; HEPATITIS B VIRUS; HEPATITIS C VIRUS; HUMAN IMMUNODEFICIENCY VIRUS; LIMIT OF DETECTION; MICROORGANISM DETECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTOZOON; REAL TIME POLYMERASE CHAIN REACTION; VIRUS;

BACTERIAL INFECTIONS; BLOOD-BORNE PATHOGENS; DNA, BACTERIAL; DNA, PROTOZOAN; DNA, VIRAL; HUMANS; LIMIT OF DETECTION; MOLECULAR DIAGNOSTIC TECHNIQUES; POLYMERASE CHAIN REACTION; PROTOZOAN INFECTIONS; TAQ POLYMERASE; VIRUS DISEASES;

EID: 84890352676     PISSN: 15251578     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmoldx.2013.08.002     Document Type: Article

References (34)

1. A.R. Margaritis, S.M. Brown, C.R. Seed, P. Kiely, B. D'Agostino, and A.J. Keller Comparison of two automated nucleic acid testing systems for simultaneous detection of human immunodeficiency virus and hepatitis C virus RNA and hepatitis B virus DNA Transfusion 47 2007 1783 1793
2. K. Tomioka, M. Peredelchuk, X. Zhu, R. Arena, D. Volokhov, A. Selvapandiyan, K. Stabler, J. Mellquist-Riemenschneider, V. Chizhikov, G. Kaplan, H. Nakhasi, and R. Duncan A multiplex polymerase chain reaction microarray assay to detect bioterror pathogens in blood J Mol Diagn 7 2005 486 494
3. T.K. Gonzales, M. Kulow, D.J. Park, C.W. Kaspar, K.S. Anklam, K.M. Pertzborn, K.D. Kerrish, R. Ivanek, and D. Dopfer A high-throughput open-array qPCR gene panel to identify, virulotype, and subtype O157 and non-O157 enterohemorrhagic Escherichia coli Mol Cell Probes 25 2011 222 230
4. T. Morrison, J. Hurley, J. Garcia, K. Yoder, A. Katz, D. Roberts, J. Cho, T. Kanigan, S.E. Ilyin, D. Horowitz, J.M. Dixon, and C.J. Brenan Nanoliter high throughput quantitative PCR Nucleic Acids Res 34 2006 e123
5. R. Slinger, I. Moldovan, N. Barrowman, and F. Chan Successful nanolitre real-time PCR detection of respiratory pathogens in clinical specimens Clin Microbiol Infect 18 2012 E286 E288
6. J.F. Drexler, B. Kupfer, N. Petersen, R.M. Grotto, S.M. Rodrigues, K. Grywna, M. Panning, A. Annan, G.F. Silva, J. Douglas, E.S. Koay, H. Smuts, E.M. Netto, P. Simmonds, M.I. Pardini, W.K. Roth, and C. Drosten A novel diagnostic target in the hepatitis C virus genome PLoS Med 6 2009 e31
7. L. Nicolas, E. Prina, T. Lang, and G. Milon Real-time PCR for detection and quantitation of leishmania in mouse tissues J Clin Microbiol 40 2002 1666 1669
8. M. Piron, R. Fisa, N. Casamitjana, P. Lopez-Chejade, L. Puig, M. Verges, J. Gascon, J. Gomez i Prat, M. Portus, and S. Sauleda Development of a real-time PCR assay for Trypanosoma cruzi detection in blood samples Acta Trop 103 2007 195 200
9. C. Davis, A. Heath, S. Best, I. Hewlett, N. Lelie, R. Schuurman, and H. Holmes Calibration of HIV-1 working reagents for nucleic acid amplification techniques against the 1st international standard for HIV-1 RNA J Virol Methods 107 2003 37 44
10. S. Lee, O. Wood, R.E. Taffs, J. Hu, A. Machuca, A. Vallejo, and I. Hewlett Development and evaluation of HIV-1 subtype RNA panels for the standardization of HIV-1 NAT assays J Virol Methods 137 2006 287 291
11. J. Saldanha, A. Heath, N. Lelie, G. Pisani, M. Nubling, and M. Yu Calibration of HCV working reagents for NAT assays against the HCV international standard: The Collaborative Study Group Vox Sang 78 2000 217 224
12. A. Grinev, S. Daniel, M. Laassri, K. Chumakov, V. Chizhikov, and M. Rios Microarray-based assay for the detection of genetic variations of structural genes of West Nile virus J Virol Methods 154 2008 27 40
13. M. Rios, M.J. Zhang, A. Grinev, K. Srinivasan, S. Daniel, O. Wood, I.K. Hewlett, and A.I. Dayton Monocytes-macrophages are a potential target in human infection with West Nile virus through blood transfusion Transfusion 46 2006 659 667
14. M. Rios, S. Daniel, C. Chancey, I.K. Hewlett, and S.L. Stramer West Nile virus adheres to human red blood cells in whole blood Clin Infect Dis 45 2007 181 186
15. M. Rios, S. Daniel, A.I. Dayton, O. Wood, I.K. Hewlett, J.S. Epstein, S. Caglioti, and S.L. Stramer In vitro evaluation of the protective role of human antibodies to West Nile virus (WNV) produced during natural WNV infection J Infect Dis 198 2008 1300 1308
16. A. Debrabant, M.B. Joshi, P.F.P. Pimenta, and D.M. Dwyer Generation of Leishmania donovani axenic amastigotes: their growth and biological characteristics Intl J Parasitol 34 2004 205 217
17. J.P. McDaniel, and J.A. Dvorak Identification, isolation, and characterization of naturally-occurring Trypanosoma cruzi variants Mol Biochem Parasitol 57 1993 213 222
18. B. Mahajan, H. Zheng, P.T. Pham, M.Y. Sedegah, V.F. Majam, N. Akolkar, M. Rios, I. Ankrah, P. Madjitey, G. Amoah, E. Addison, I.A. Quakyi, and S. Kumar Polymerase chain reaction-based tests for pan-species and species-specific detection of human Plasmodium parasites Transfusion 52 2012 1949 1956
19. R. Sokal, and F. Rohlf Biometry: The Principles and Practice of Statistics in Biological Research ed 2 1981 W. H. Freeman and Company New York
20. E.B. Wilson Probable inference, the law of succession, and statistical inference J Am Stat Assoc 22 1927 209 212
21. J. Li, P. Smyth, S. Cahill, K. Denning, R. Flavin, S. Aherne, M. Pirotta, S.M. Guenther, J.J. O'Leary, and O. Sheils Improved RNA quality and TaqMan Pre-amplification method (PreAmp) to enhance expression analysis from formalin fixed paraffin embedded (FFPE) materials BMC Biotechnol 8 2008 10
22. M. Noutsias, M. Rohde, A. Block, K. Klippert, O. Lettau, K. Blunert, M. Hummel, U. Kuhl, H. Lehmkuhl, R. Hetzer, U. Rauch, W. Poller, M. Pauschinger, H.P. Schultheiss, H.D. Volk, and K. Kotsch Preamplification techniques for real-time RT-PCR analyses of endomyocardial biopsies BMC Mol Biol 9 2008 3
23. F. Araujo, I. Henriques, F. Monteiro, E. Meireles, A. Cruz, G. Tavares, and A. Mota-Miranda Evaluation of NucliSens-AmpliScreen methodology to detect subtypes G of HIV-1 and 4c/4d of HCV in the screening of blood donors Transfus Clin Biol 12 2005 331 335
24. M.P. Busch, L.H. Tobler, J. Saldanha, S. Caglioti, V. Shyamala, J.M. Linnen, J. Gallarda, B. Phelps, R.I. Smith, M. Drebot, and S.H. Kleinman Analytical and clinical sensitivity of West Nile virus RNA screening and supplemental assays available in 2003 Transfusion 45 2005 492 499
25. L. Li, P.J. Chen, M.H. Chen, K.F. Chak, K.S. Lin, and S.J. Tsai A pilot study for screening blood donors in Taiwan by nucleic acid amplification technology: detecting occult hepatitis B virus infections and closing the serologic window period for hepatitis C virus Transfusion 48 2008 1198 1206
26. L. Pichl, A. Heitmann, P. Herzog, J. Oster, H. Smets, and V. Schottstedt Magnetic bead technology in viral RNA and DNA extraction from plasma minipools Transfusion 45 2005 1106 1110
27. G. Pisani, S. Pupella, F. Marino, A. Gaggioli, V. Sambri, G. Rossini, M. Wirz, and G. Grazzini Interlaboratory study to evaluate the performance of laboratories involved in West Nile virus RNA screening of blood and blood components by nucleic acid amplification testing in Italy Blood Transfus 9 2011 425 429
28. C. Mary, F. Faraut, L. Lascombe, and H. Dumon Quantification of Leishmania infantum DNA by a real-time PCR assay with high sensitivity J Clin Microbiol 42 2004 5249 5255
29. H. Najdenski, M. Heyndrickx, L. Herman, H. Werbrouck, and E. Van Coillie Quantification of Yersinia enterocolitica in raw milk using qPCR Vet Microbiol 160 2012 428 434
30. P. Patel, J.A. Garson, K.I. Tettmar, S. Ancliff, C. McDonald, T. Pitt, J. Coelho, and R.S. Tedder Development of an ethidium monoazide-enhanced internally controlled universal 16S rDNA real-time polymerase chain reaction assay for detection of bacterial contamination in platelet concentrates Transfusion 52 2012 1423 1432
31. S.E. Schachterle, G. Mtove, J.P. Levens, E.G. Clemens, L. Shi, A. Raj, B. Munoz, M.E. Reller, S. West, J.S. Dumler, and D. Sullivan Prevalence and density-related concordance of three diagnostic tests for malaria in a region of Tanzania with hypoendemic malaria J Clin Microbiol 49 2011 3885 3891
32. A.G. Schijman, M. Bisio, L. Orellana, M. Sued, T. Duffy, A.M. Mejia Jaramillo, C. Cura, F. Auter, V. Veron, Y. Qvarnstrom, S. Deborggraeve, G. Hijar, I. Zulantay, R.H. Lucero, E. Velazquez, T. Tellez, Z. Sanchez Leon, L. Galvao, D. Nolder, M. Monje Rumi, J.E. Levi, J.D. Ramirez, P. Zorrilla, M. Flores, M.I. Jercic, G. Crisante, N. Anez, A.M. De Castro, C.I. Gonzalez, K. Acosta Viana, P. Yachelini, F. Torrico, C. Robello, P. Diosque, O. Triana Chavez, C. Aznar, G. Russomando, P. Buscher, A. Assal, F. Guhl, S. Sosa Estani, A. DaSilva, C. Britto, A. Luquetti, and J. Ladzins International study to evaluate PCR methods for detection of Trypanosoma cruzi DNA in blood samples from Chagas disease patients PLoS Negl Trop Dis 5 2011 e931
33. E.M. Elnifro, A.M. Ashshi, R.J. Cooper, and P.E. Klapper Multiplex PCR: optimization and application in diagnostic virology Clin Microbiol Rev 13 2000 559 570
34. R. van Doorn, M.M. Klerks, M.P. van Gent-Pelzer, A.G. Speksnijder, G.A. Kowalchuk, and C.D. Schoen Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using Biotrove OpenArrays Appl Environ Microbiol 75 2009 7253 7260