Rough colony morphology of Mycobacterium massiliense Type II genotype is due to the deletion of glycopeptidolipid locus within its genome

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Kim, Byoung Jun ^a   Kim, Bo Ram ^a   Lee, So Young ^a   Kook, Yoon Hoh ^a   Kim, Bum Joon ^a  

^a Seoul National University College of Medicine   (South Korea)

Author keywords

Comparative genomics; Glycopeptidolipid (GPL); GPL biosynthesis related genes; Mycobacterium massiliense; Rough colony morphotype

Indexed keywords

GLYCOPEPTIDE; GLYCOPEPTIDOLIPID; LIPID; UNCLASSIFIED DRUG;

AMPLICON; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM COLONY; CONTROLLED STUDY; EVOLUTIONARY ADAPTATION; GENE CLUSTER; GENE DELETION; GENE LOCUS; GENE TARGETING; GENETIC ANALYSIS; GENETIC CONSERVATION; GENETIC DATABASE; GENETIC POLYMORPHISM; GPL GENE; LIPOGENESIS; MORPHOLOGICAL TRAIT; MORPHOTYPE; MYCOBACTERIUM; MYCOBACTERIUM ABSCESSUS; MYCOBACTERIUM MASSILIENSE; MYCOBACTERIUM MASSILIENSE GENOTYPE 2; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTIDE SYNTHESIS; PHENOTYPE; POLYMERASE CHAIN REACTION; RAPIDLY GROWING MYCOBACTERIUM; ROUGH COLONY MORPHOLOGY; SPECIES DIFFERENTIATION;

CORYNEBACTERINEAE; MYCOBACTERIUM ABSCESSUS; MYCOBACTERIUM MASSILIENSE;

ANTIGENS, BACTERIAL; GENE DELETION; GENE EXPRESSION; GENOME, BACTERIAL; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM; QUANTITATIVE TRAIT LOCI;

EID: 84890252135     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-890     Document Type: Article

References (41)

1. Han XY, De I, Jacobson KL. Rapidly growing mycobacteria: clinical and microbiologic studies of 115 cases. Am J Clin Pathol 2007, 128(4):612-621. 10.1309/1KB2GKYT1BUEYLB5, 17875513.
2. Olivier KN, Weber DJ, Wallace RJ, Faiz AR, Lee JH, Zhang Y, Brown-Elliot BA, Handler A, Wilson RW, Schechter MS, et al. Nontuberculous mycobacteria I: multicenter prevalence study in cystic fibrosis. Am J Respir Crit Care Med 2003, 167(6):828-834. 10.1164/rccm.200207-678OC, 12433668.
3. Brown-Elliott BA, Wallace RJ. Clinical and taxonomic status of pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria. Clin Microbiol Rev 2002, 15:716-746. 10.1128/CMR.15.4.716-746.2002, 126856, 12364376.
4. Medjahed H, Gaillard JL, Reyrat JM. Mycobacterium abscessus: a new player in the mycobacterial field. Trends Microbiol 2010, 18:117-123. 10.1016/j.tim.2009.12.007, 20060723.
5. Adekambi T, Berger P, Raoult D, Drancourt M. rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int J Syst Evol Microbiol 2006, 56(Pt 1):133-143.
6. Adekambi T, Reynaud-Gaubert M, Greub G, Gevaudan MJ, La Scola B, Raoult D, Drancourt M. Amoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia. J Clin Microbiol 2004, 42(12):5493-5501. 10.1128/JCM.42.12.5493-5501.2004, 535245, 15583272.
7. Leao SC, Tortoli E, Euzeby JP, Garcia MJ. Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus. Int J Syst Evol Microbiol 2011, 61(Pt 9):2311-2313.
8. Koh WJ, Kwon OJ, Jeon K, Kim TS, Lee KS, Park YK, Bai GH. Clinical significance of nontuberculous mycobacteria isolated from respiratory specimens in Korea. Chest 2006, 129(2):341-348. 10.1378/chest.129.2.341, 16478850.
9. Eckstein TM, Inamine JM, Lambert ML, Belisle JT. A genetic mechanism for deletion of the ser2 gene cluster and formation of rough morphological variants of Mycobacterium avium. J Bacteriol 2000, 182(21):6177-6182. 10.1128/JB.182.21.6177-6182.2000, 94754, 11029440.
10. Fregnan GB, Smith DW. Description of various colony forms of mycobacteria. J Bacteriol 1962, 83(4):819-27. 279362, 13894939.
11. Howard ST, Byrd TF. The rapidly growing mycobacteria: saprophytes and parasites. Microbes Infect 2000, 2(15):1845-1853. 10.1016/S1286-4579(00)01338-1, 11165929.
12. Lopez Marin LM, Laneelle MA, Prome D, Daffe M. Structures of the glycopeptidolipid antigens of two animal pathogens: Mycobacterium senegalense and Mycobacterium porcinum. Eur J Biochem 1993, 215(3):859-866. 10.1111/j.1432-1033.1993.tb18103.x, 8354291.
13. Ripoll F, Deshayes C, Pasek S, Laval F, Beretti JL, Biet F, Risler JL, Daffe M, Etienne G, Gaillard JL, et al. Genomics of glycopeptidolipid biosynthesis in Mycobacterium abscessus and M. chelonae. BMC genomics 2007, 8:114. 10.1186/1471-2164-8-114, 1885439, 17490474.
14. Field SK, Fisher D, Cowie RL. Mycobacterium avium complex pulmonary disease in patients without HIV infection. Chest 2004, 126(2):566-581. 10.1378/chest.126.2.566, 15302746.
15. Horsburgh CR. The pathophysiology of disseminated Mycobacterium avium complex disease in AIDS. J Infect Dis 1999, 179:S461-S465. 10.1086/314804, 10099120.
16. Wagner D, Young LS. Nontuberculous mycobacterial infections: a clinical review. Infection 2004, 32(5):257-270. 10.1007/s15010-004-4001-4, 15624889.
17. Howard ST, Rhoades E, Recht J, Pang X, Alsup A, Kolter R, Lyons CR, Byrd TF. Spontaneous reversion of Mycobacterium abscessus from a smooth to a rough morphotype is associated with reduced expression of glycopeptidolipid and reacquisition of an invasive phenotype. Microbiology 2006, 152(Pt 6):1581-1590.
18. Rhoades ER, Archambault AS, Greendyke R, Hsu FF, Streeter C, Byrd TF. Mycobacterium abscessus Glycopeptidolipids mask underlying cell wall phosphatidyl-myo-inositol mannosides blocking induction of human macrophage TNF-alpha by preventing interaction with TLR2. J Immunol 2009, 183:1997-2007. 10.4049/jimmunol.0802181, 19596998.
19. Nessar R, Reyrat JM, Davidson LB, Byrd TF. Deletion of the mmpL4b gene in the Mycobacterium abscessus glycopeptidolipid biosynthetic pathway results in loss of surface colonization capability, but enhanced ability to replicate in human macrophages and stimulate their innate immune response. Microbiology 2011, 157:1187-1195. 10.1099/mic.0.046557-0, 21292749.
20. Kim BJ, Yi SY, Shim TS, Do SY, Yu HK, Park YG, Kook YH, Kim BJ. Discovery of a novel hsp65 genotype within Mycobacterium massiliense associated with the rough colony morphology. PloS one 2012, 7(6):e38420. 10.1371/journal.pone.0038420, 3367924, 22693637.
21. Kim BJ, Kim BR, Hong SH, Seok SH, Kook YH, Kim BJ. Complete genome sequence of mycobacterium massiliense clinical strain asan 50594, belonging to the type II genotype. Genome Announc 2013, 1:e00429-13. 3703596, 23833135.
22. Tettelin H, Sampaio EP, Daugherty SC, Hine E, Riley DR, Sadzewicz L, Sengamalay N, Shefchek K, Su Q, Tallon LJ, et al. Genomic Insights into the Emerging Human Pathogen Mycobacterium massiliense. J Bacteriol 2012, 194(19):5450-5450. 10.1128/JB.01200-12, 3457237, 22965080.
23. Recht J, Kolter R. Glycopeptidolipid acetylation affects sliding motility and biofilm formation in Mycobacterium smegmatis. J Bacteriol 2001, 183(19):5718-5724. 10.1128/JB.183.19.5718-5724.2001, 95464, 11544235.
24. Deshayes C, Laval F, Montrozier H, Daffe M, Etienne G, Reyrat JM. A glycosyltransferase involved in biosynthesis of triglycosylated glycopeptidolipids in Mycobacterium smegmatis: impact on surface properties. J Bacteriol 2005, 187(21):7283-7291. 10.1128/JB.187.21.7283-7291.2005, 1272997, 16237011.
25. Miyamoto Y, Mukai T, Nakata N, Maeda Y, Kai M, Naka T, Yano I, Makino M. Identification and characterization of the genes involved in glycosylation pathways of mycobacterial glycopeptidolipid biosynthesis. J Bacteriol 2006, 188(1):86-95. 10.1128/JB.188.1.86-95.2006, 1317587, 16352824.
26. Jeevarajah D, Patterson JH, McConville MJ, Billman-Jacobe H. Modification of glycopeptidolipids by an O-methyltransferase of Mycobacterium smegmatis. Microbiology 2002, 148(Pt 10):3079-3087.
27. Jeevarajah D, Patterson JH, Taig E, Sargeant T, McConville MJ, Billman-Jacobe H. Methylation of GPLs in Mycobacterium smegmatis and Mycobacterium avium. J Bacteriol 2004, 186(20):6792-6799. 10.1128/JB.186.20.6792-6799.2004, 522212, 15466031.
28. Patterson JH, McConville MJ, Haites RE, Coppel RL, Billman-Jacobe H. Identification of a methyltransferase from Mycobacterium smegmatis involved in glycopeptidolipid synthesis. J Bio Chem 2000, 275(32):24900-24906.
29. Billman-Jacobe H, McConville MJ, Haites RE, Kovacevic S, Coppel RL. Identification of a peptide synthetase involved in the biosynthesis of glycopeptidolipids of Mycobacterium smegmatis. Mol Microbiol 1999, 33(6):1244-1253.
30. Cardoso AM, Martins De Sousa E, Viana-Niero C, Bonfim De Bortoli F, Pereira Das Neves ZC, Leao SC, Junqueira-Kipnis AP, Kipnis A. Emergence of nosocomial Mycobacterium massiliense infection in Goias, Brazil. Microbes Infect 2008, 10(4-15):1552-1557.
31. Duarte RS, Lourenco MC, Fonseca Lde S, Leao SC, Amorim Ede L, Rocha IL, Coelho FS, Viana-Niero C, Gomes KM, da Silva MG, et al. Epidemic of postsurgical infections caused by Mycobacterium massiliense. J Clin Microbiol 2009, 47(7):2149-2155. 10.1128/JCM.00027-09, 2708466, 19403765.
32. Kim HY, Yun YJ, Park CG, Lee DH, Cho YK, Park BJ, Joo SI, Kim EC, Hur YJ, Kim BJ, et al. Outbreak of Mycobacterium massiliense infection associated with intramuscular injections. J Clin Microbiol 2007, 45(9):3127-3130. 10.1128/JCM.00608-07, 2045247, 17626174.
33. Simmon KE, Pounder JI, Greene JN, Walsh F, Anderson CM, Cohen S, Petti CA. Identification of an emerging pathogen, Mycobacterium massiliense, by rpoB sequencing of clinical isolates collected in the United States. J Clin Microbiol 2007, 45(6):1978-1980. 10.1128/JCM.00563-07, 1933107, 17409204.
34. Viana-Niero C, Lima KV, Lopes ML, Rabello MC, Marsola LR, Brilhante VC, Durham AM, Leao SC. Molecular characterization of Mycobacterium massiliense and Mycobacterium bolletii in isolates collected from outbreaks of infections after laparoscopic surgeries and cosmetic procedures. J Clin Microbiol 2008, 46(3):850-855. 10.1128/JCM.02052-07, 2268380, 18174307.
35. Zelazny AM, Root JM, Shea YR, Colombo RE, Shamputa IC, Stock F, Conlan S, McNulty S, Brown-Elliott BA, Wallace RJ, et al. Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii. J Clin Microbiol 2009, 47(7):1985-1995. 10.1128/JCM.01688-08, 2708513, 19420162.
36. Bryant JM, Grogono DM, Greaves D, Foweraker J, Roddick I, Inns T, Reacher M, Haworth CS, Curran MD, Harris SR, et al. Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet 2013, 381(9877):1551-1560. 10.1016/S0140-6736(13)60632-7, 3664974, 23541540.
37. Kim HY, Kook Y, Yun YJ, Park CG, Lee NY, Shim TS, Kim BJ, Kook YH. Proportions of Mycobacterium massiliense and Mycobacterium bolletii strains among Korean Mycobacterium chelonae-Mycobacterium abscessus group isolates. J Clin Microbiol 2008, 46(10):3384-3390. 10.1128/JCM.00319-08, 2566064, 18753344.
38. Mukherjee R, Gomez M, Jayaraman N, Smith I, Chatterji D. Hyperglycosylation of glycopeptidolipid of Mycobacterium smegmatis under nutrient starvation: structural studies. Microbiology 2005, 151(Pt 7):2385-2392.
39. Ortalo-Magne A, Lemassu A, Laneelle MA, Bardou F, Silve G, Gounon P, Marchal G, Daffe M. Identification of the surface-exposed lipids on the cell envelopes of Mycobacterium tuberculosis and other mycobacterial species. J Bacteriol 1996, 178(2):456-461. 177678, 8550466.
40. Perez E, Constant P, Lemassu A, Laval F, Daffe M, Guilhot C. Characterization of three glycosyltransferases involved in the biosynthesis of the phenolic glycolipid antigens from the Mycobacterium tuberculosis complex. J Biol Chem 2004, 279(41):42574-42583. 10.1074/jbc.M406246200, 15292272.
41. Kim BJ, Lee SH, Lyu MA, Kim SJ, Bai GH, Chae GT, Kim EC, Cha CY, Kook YH. Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB). J Clin Microbiol 1999, 37(6):1714-1720. 84932, 10325313.