Genomics of glycopeptidolipid biosynthesis in Mycobacterium abscessus and M. chelonae

BMC Genomics

Volumn 8, Issue , 2007, Pages

  Ripoll, Fabienne ^a   Deshayes, Caroline ^b,c   Pasek, Sophie ^d   Laval, Françoise ^d   Beretti, Jean Luc ^c   Biet, Franck ^e   Risler, Jean Loup ^d   Daffé, Mamadou ^d   Etienne, Gilles ^d   Gaillard, Jean Louis ^a   Reyrat, Jean Marc ^b,c  

^a Laboratoire de Microbiologie   (France)

^b INSERM   (France)

^c UNIVERSITÉ PARIS DESCARTES   (France)

^d CNRS   (France)

^e CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACYLTRANSFERASE; GLYCOLIPID; GLYCOPEPTIDOLIPID; LIPOPEPTIDE; REGULATOR PROTEIN; UNCLASSIFIED DRUG; GLYCOPEPTIDE;

ACETYLATION; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; CHEMICAL ANALYSIS; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; FUNCTIONAL GENOMICS; GENE CLUSTER; GENE LOCUS; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC ORGANIZATION; LIPOGENESIS; MOLECULAR EVOLUTION; MYCOBACTERIUM ABSCESSUS; MYCOBACTERIUM CHELONEI; MYCOBACTERIUM SMEGMATIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN GLYCOSYLATION; PROTEIN METHYLATION; PROTEIN MODIFICATION; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; BIOSYNTHESIS; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; MASS SPECTROMETRY; MOLECULAR GENETICS; THIN LAYER CHROMATOGRAPHY;

BACTERIA (MICROORGANISMS); MYCOBACTERIUM ABSCESSUS; MYCOBACTERIUM SMEGMATIS;

ACETYLTRANSFERASES; BASE SEQUENCE; BIOSYNTHETIC PATHWAYS; CHROMATOGRAPHY, THIN LAYER; EVOLUTION, MOLECULAR; GENOME, BACTERIAL; GLYCOLIPIDS; GLYCOPEPTIDES; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM CHELONAE; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 34250159795     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-8-114     Document Type: Article

References (41)

1. Brown-Elliott BA Wallace RJ Jr. Clinical and taxonomic status of pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria Clin Microbiol Rev 2002 15 4 716-746 126856 12364376 10.1128/ CMR.15.4.716-746.2002
2. Sanguinetti M Ardito F Fiscarelli E La Sorda M D'Argenio P Ricciotti G Fadda G Fatal pulmonary infection due to multidrug-resistant Mycobacterium abscessus in a patient with cystic fibrosis J Clin Microbiol 2001 39 2 816-819 87830 11158161 10.1128/JCM.39.2.816-819.2001
3. Billman-Jacobe H Glycopeptidolipid synthesis in Mycobacteria Current Science 2004 86 11-114
4. Daffe M and Lemmassu A. Glycobiology of the mycobacterial surface. Structures and biological activities of the cell enveloppe glycoconjugates. Glycomicrobiology New-York, Kluwer Academic/Plenum Publishers Doyle 2000 225-273
5. Brennan PJ Mycobacterium and other actinomycetes Microbial Lipids London, UK, Academic Press Ratledge CWSG 1988 1 203-298
6. Lopez-Marin LM Gautier N Laneelle MA Silve G Daffe M Structures of the glycopeptidolipid antigens of Mycobacterium abscessus and Mycobacterium chelonae and possible chemical basis of the serological cross-reactions in the Mycobacterium fortuitum complex Microbiology 1994 140 (Pt 5) 1109-1118 8025677
7. Etienne G Villeneuve C Billman-Jacobe H Astarie-Dequeker C Dupont MA Daffe M The impact of the absence of glycopeptidolipids on the ultrastructure, cell surface and cell wall properties, and phagocytosis of Mycobacterium smegmatis Microbiology 2002 148 Pt 10 3089-3100 12368442
8. Recht J Martinez A Torello S Kolter R Genetic analysis of sliding motility in Mycobacterium smegmatis J Bacteriol 2000 182 15 4348-4351 101957 10894747 10.1128/JB.182.15.4348-4351.2000
9. Deshayes C Laval F Montrozier H Daffe M Etienne G Reyrat JM A Glycosyltransferase Involved in Biosynthesis of Triglycosylated Glycopeptidolipids in Mycobacterium smegmatis: Impact on Surface Properties J Bacteriol 2005 187 21 7283-7291 1272997 16237011 10.1128/ JB.187.21.7283-7291.2005
10. Barrow WW Davis TL Wright EL Labrousse V Bachelet M Rastogi N Immunomodulatory spectrum of lipids associated with Mycobacterium avium serovar 8 Infect Immun 1995 63 1 126-133 172968 7806348
11. Villeneuve C Etienne G Abadie V Montrozier H Bordier C Laval F Daffe M Maridonneau-Parini I Astarie-Dequeker C Surface-exposed glycopeptidolipids of Mycobacterium smegmatis specifically inhibit the phagocytosis of mycobacteria by human macrophages. Identification of a novel family of glycopeptidolipids J Biol Chem 2003 278 51 51291-51300 10.1074/jbc.M306554200 14534313
12. Byrd TF Lyons CR Preliminary characterization of a Mycobacterium abscessus mutant in human and murine models of infection Infect Immun 1999 67 9 4700-4707 96797 10456919
13. Howard ST Rhoades E Recht J Pang X Alsup A Kolter R Lyons CR Byrd TF Spontaneous reversion of Mycobacterium abscessus from a smooth to a rough morphotype is associated with reduced expression of glycopeptidolipid and reacquisition of an invasive phenotype Microbiology 2006 152 Pt 6 1581-1590 10.1099/mic.0.28625-0 16735722
14. Catherinot E Clarissou J Etienne G Ripoll F Emile JF Daffe M Perronne C Soudais C Gaillard JL Rottman M Hypervirulence of a rough variant of the Mycobacterium abscessus type strain Infect Immun 2007 75 2 1055 -058 10.1128/IAI.00835-06 17145951
15. Etienne G Laval F Villeneuve C Dinadayala P Abouwarda A Zerbib D Galamba A Daffe M The cell envelope structure and properties of Mycobacterium smegmatis mc(2)155: Is there a clue for the unique transformability of the strain? Microbiology 2005 151 Pt 6 2075-2086 10.1099/mic.0.27869-0 15942014
16. Comet JP Aude JC Glemet E Risler JL Henaut A Slonimski PP Codani JJ Significance of Z-value statistics of Smith-Waterman scores for protein alignments Comput Chem 1999 23 3-4 317-331 10.1016/S0097-8485(99)00008-X 10627144
17. Glemet E Codani JJ LASSAP, a LArge Scale Sequence compArison Package Comput Appl Biosci 1997 13 2 137-143 9146960
18. Billman-Jacobe H McConville MJ Haites RE Kovacevic S Coppel RL Identification of a peptide synthetase involved in the biosynthesis of glycopeptidolipids of Mycobacterium smegmatis Mol Microbiol 1999 33 6 1244-1253 10.1046/j.1365-2958.1999.01572.x 10510238
19. Sonden B Kocincova D Deshayes C Euphrasie D Rhayat L Laval F Frehel C Daffe M Etienne G Reyrat JM Gap, a mycobacterial specific integral membrane protein, is required for glycolipid transport to the cell surface Mol Microbiol 2005 58 2 426-440 10.1111/j.1365-2958.2005.04847.x 16194230
20. Trivedi OA Arora P Sridharan V Tickoo R Mohanty D Gokhale RS Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria Nature 2004 428 6981 441-445 10.1038/nature02384 15042094
21. Miyamoto Y Mukai T Nakata N Maeda Y Kai M Naka T Yano I Makino M Identification and characterization of the genes involved in glycosylation pathways of mycobacterial glycopeptidolipid biosynthesis J Bacteriol 2006 188 1 86-95 1317587 16352824 10.1128/JB.188.1.86-95.2006
22. Mukherjee R Gomez M Jayaraman N Smith I Chatterji D Hyperglycosylation of glycopeptidolipid of Mycobacterium smegmatis under nutrient starvation: Structural studies Microbiology 2005 151 Pt 7 2385-2392 10.1099/mic.0.27908-0 16000728
23. Jeevarajah D Patterson JH McConville MJ Billman-Jacobe H Modification of glycopeptidolipids by an O-methyltransferase of Mycobacterium smegmatis Microbiology 2002 148 Pt 10 3079-3087 12368441
24. Jeevarajah D Patterson JH Taig E Sargeant T McConville MJ Billman-Jacobe H Methylation of GPLs in Mycobacterium smegmatis and Mycobacterium avium J Bacteriol 2004 186 20 6792-6799 522212 15466031 10.1128/ JB.186.20.6792-6799.2004
25. Patterson JH McConville MJ Haites RE Coppel RL Billman-Jacobe H Identification of a methyltransferase from Mycobacterium smegmatis involved in glycopeptidolipid synthesis J Biol Chem 2000 275 32 24900-24906 10.1074/jbc.M000147200 10801784
26. Recht J Kolter R Glycopeptidolipid acetylation affects sliding motility and biofilm formation in Mycobacterium smegmatis J Bacteriol 2001 183 19 5718-5724 95464 11544235 10.1128/JB.183.19.5718-5724.2001
27. Cole ST Brosch R Parkhill J Garnier T Churcher C Harris D Gordon SV Eiglmeier K Gas S Barry CE 3rd Tekaia F Badcock K Basham D Brown D Chillingworth T Connor R Davies R Devlin K Feltwell T Gentles S Hamlin N Holroyd S Hornsby T Jagels K Barrell BG Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence Nature 1998 393 6685 537-544 10.1038/31159 9634230
28. Jain M Cox JS Interaction between Polyketide Synthase and Transporter Suggests Coupled Synthesis and Export of Virulence Lipid in M. tuberculosis PLoS Pathog 2005 1 1 e2 1238737 16201014 10.1371/ journal.ppat.0010002
29. Hammerschmidt S Hilse R van Putten JP Gerardy-Schahn R Unkmeir A Frosch M Modulation of cell surface sialic acid expression in Neisseria meningitidis via a transposable genetic element Embo J 1996 15 1 192-198 449931 8598202
30. Poussier S Thoquet P Trigalet-Demery D Barthet S Meyer D Arlat M Trigalet A Host plant-dependent phenotypic reversion of Ralstonia solanacearum from non-pathogenic to pathogenic forms via alterations in the phcA gene Mol Microbiol 2003 49 4 991-1003 10.1046/ j.1365-2958.2003.03605.x 12890023
31. Kusunoki S Ezaki T Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov Int J Syst Bacteriol 1992 42 2 240-245 1581184
32. Barrow WW Brennan PJ Isolation in high frequency of rough variants of Mycobacterium intracellulare lacking C-mycoside glycopeptidolipid antigens J Bacteriol 1982 150 1 381-384 220124 7061400
33. Belisle JT Klaczkiewicz K Brennan PJ Jacobs WR Jr. Inamine JM Rough morphological variants of Mycobacterium avium. Characterization of genomic deletions resulting in the loss of glycopeptidolipid expression J Biol Chem 1993 268 14 10517-10523 8486704
34. Laurent JP Hauge K Burnside K Cangelosi G Mutational analysis of cell wall biosynthesis in Mycobacterium avium J Bacteriol 2003 185 16 5003-5006 166487 12897021 10.1128/JB.185.16.5003-5006.2003
35. Genoscope projects http://www.cns.fr/externe/English/Projets/
36. Bioinformatic Tools http://migale.jouy.inra.fr/outils/ select_all_outils_zpt
37. Rutherford K Parkhill J Crook J Horsnell T Rice P Rajandream MA Barrell B Artemis: Sequence visualization and annotation Bioinformatics 2000 16 10 944-945 10.1093/bioinformatics/16.10.944 11120685
38. J. Craig Venter Institute http://www.tigr.org/
39. Zhang Y Yakrus MA Graviss EA Williams-Bouyer N Turenne C Kabani A Wallace RJ Jr. Pulsed-field gel electrophoresis study of Mycobacterium abscessus isolates previously affected by DNA degradation J Clin Microbiol 2004 42 12 5582-5587 535220 15583285 10.1128/ JCM.42.12.5582-5587.2004
40. Howard ST Byrd TF Lyons CR A polymorphic region in Mycobacterium abscessus contains a novel insertion sequence element Microbiology 2002 148 Pt 10 2987-2996 12368432
41. Vultos TD Mederle I Abadie V Pimentel M Moniz-Pereira J Gicquel B Reyrat JM Winter N Modification of the mycobacteriophage Ms6 attP core allows the integration of multiple vectors into different tRNAala T-loops in slow- and fast-growing mycobacteria BMC Mol Biol 2006 7 47 1762012 17173678 10.1186/1471-2199-7-47