Discovery of a novel hsp65 genotype within Mycobacterium massiliense associated with the rough colony morphology

PLoS ONE

Volumn 7, Issue 6, 2012, Pages

  Kim, Byoung Jun ^a   Yi, Su Yeon ^a   Shim, Tae Sun ^b   Do, Seung Yeon ^a   Yu, Hee Kyung ^c   Park, Young Gil ^c   Kook, Yoon Hoh ^a   Kim, Bum Joon ^a  

^a Seoul National University College of Medicine   (South Korea)

^b University of Ulsan College of Medicine   (South Korea)

^c Korean Institute of Tuberculosis   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; HEAT SHOCK PROTEIN 65; LIPID; RNA POLYMERASE BETA SUBUNIT; BACTERIAL PROTEIN; CHAPERONIN; HEAT SHOCK PROTEIN 65, MYCOBACTERIUM; HEAT-SHOCK PROTEIN 65, MYCOBACTERIUM;

AMPLICON; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CLINICAL ARTICLE; COLONY MORPHOLOGY; CONTROLLED STUDY; DNA EXTRACTION; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HSP65 GENE; HUMAN; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MICROBIAL MORPHOLOGY; MYCOBACTERIUM; MYCOBACTERIUM MASSILIENSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION MAPPING; RPOB GENE; SEQUENCE ANALYSIS; CLASSIFICATION; CYTOLOGY; GENETIC POLYMORPHISM; GENETICS; METABOLISM;

MYCOBACTERIUM MASSILIENSE;

BACTERIAL PROTEINS; CHAPERONIN 60; GENOTYPE; MYCOBACTERIUM; PHYLOGENY; POLYMORPHISM, GENETIC;

EID: 84861877383     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0038420     Document Type: Article

References (50)

1. Han XY, De I, Jacobson KL, (2007) Rapidly growing mycobacteria: clinical and microbiologic studies of 115 cases. Am J Clin Pathol 128: 612-621.
2. Olivier KN, Weber DJ, Wallace RJ Jr, Faiz AR, Lee JH, et al. (2003) Nontuberculous mycobacteria. I: multicenter prevalence study in cystic fibrosis. Am J Respir Crit Care Med 167: 828-834.
3. CDC, (1999) Nontuberculous mycobacteria reported to the Public Health Laboratory Information System by state public health laboratories in the United States, 1993-1996. Atlanta Centers for Disease Control and Prevention pp. 1-51.
4. Petrini B, (2006) Non-tuberculous mycobacterial infections. Scand J Infect Dis 38: 246-255.
5. Pulcini C, Vandenbussche E, Podglajen I, Sougakoff W, Truffot-Pernot C, et al. (2006) Hip prosthesis infection due to Mycobacterium wolinskyi. J Clin Microbiol 44: 3463-3464.
6. Koh WJ, Kwon OJ, Jeon K, Kim TS, Lee KS, et al. (2006) Clinical significance of nontuberculous mycobacteria isolated from respiratory specimens in Korea. Chest 129: 341-348.
7. Choi G-E, Jo Y, Shin SJ, (2012) Current Understanding of Mycobacterium abscessus Infection. JOURNAL OF BACTERIOLOGY AND VIROLOGY 42: 17-28.
8. Adekambi T, Berger P, Raoult D, Drancourt M, (2006) rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int J Syst Evol Microbiol 56: 133-143.
9. Adekambi T, Reynaud-Gaubert M, Greub G, Gevaudan MJ, La Scola B, et al. (2004) Amoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia. J Clin Microbiol 42: 5493-5501.
10. Kim HY, Kook Y, Yun YJ, Park CG, Lee NY, et al. (2008) Proportions of Mycobacterium massiliense and Mycobacterium bolletii strains among Korean Mycobacterium chelonae-Mycobacterium abscessus group isolates. J Clin Microbiol 46: 3384-3390.
11. Koh WJ, Jeon K, Lee NY, Kim BJ, Kook YH, et al. (2011) Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus. Am J Respir Crit Care Med 183: 405-410.
12. Adekambi T, Colson P, Drancourt M, (2003) rpoB-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria. J Clin Microbiol 41: 5699-5708.
13. Felsenstein J, (1985) Confidence-Limits on Phylogenies- an Approach Using the Bootstrap. Evolution 39: 783-791.
14. Kim H, Kim SH, Shim TS, Kim MN, Bai GH, et al. (2005) Differentiation of Mycobacterium species by analysis of the heat-shock protein 65 gene (hsp65). Int J Syst Evol Micr 55: 1649-1656.
15. Soini H, Viljanen MK, (1997) Diversity of the 32-kilodalton protein gene may form a basis for species determination of potentially pathogenic mycobacterial species. J Clin Microbiol 35: 769-773.
16. Takewaki S, Okuzumi K, Manabe I, Tanimura M, Miyamura K, et al. (1994) Nucleotide sequence comparison of the mycobacterial dnaJ gene and PCR-restriction fragment length polymorphism analysis for identification of mycobacterial species. Int J Syst Bacteriol 44: 159-166.
17. Kim HY, Yun YJ, Park CG, Lee DH, Cho YK, et al. (2007) Outbreak of Mycobacterium massiliense infection associated with intramuscular injections. J Clin Microbiol 45: 3127-3130.
18. Koh WJ, Kwon OJ, Lee NY, Kook YH, Lee HK, et al. (2009) First case of disseminated Mycobacterium bolletii infection in a young adult patient. J Clin Microbiol 47: 3362-3366.
19. Ripoll F, Deshayes C, Pasek S, Laval F, Beretti JL, et al. (2007) Genomics of glycopeptidolipid biosynthesis in Mycobacterium abscessus and M. chelonae. BMC Genomics 8: 114.
20. Simmon KE, Pounder JI, Greene JN, Walsh F, Anderson CM, et al. (2007) Identification of an emerging pathogen, Mycobacterium massiliense, by rpoB sequencing of clinical isolates collected in the United States. J Clin Microbiol 45: 1978-1980.
21. Cho AY, Kim YS, Kook YH, Kim SO, Back SJ, et al. (2010) Identification of Cutaneous Mycobacterium massiliense Infections Associated with Repeated Surgical Procedures. Ann Dermatol 22: 114-118.
22. Nakanaga K, Hoshino Y, Era Y, Matsumoto K, Kanazawa Y, et al. (2011) Multiple cases of cutaneous Mycobacterium massiliense infection in a "hot spa" in Japan. J Clin Microbiol 49: 613-617.
23. Tortoli E, Gabini R, Galanti I, Mariottini A, (2008) Lethal Mycobacterium massiliense sepsis, Italy. Emerg Infect Dis 14: 984-985.
24. Zelazny AM, Root JM, Shea YR, Colombo RE, Shamputa IC, et al. (2009) Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii. J Clin Microbiol 47: 1985-1995.
25. Kim BJ, Jeong J, Lee SH, Kim SR, Yu HK, et al. (2011) Mycobacterium koreense sp. nov., a novel slowly growing nonchromogenic species closely related to Mycobacterium triviale. Int J Syst Evol Microbiol.
26. Lee H, Lee SA, Lee IK, Yu HK, Park YG, et al. (2010) Mycobacterium paraterrae sp. nov. recovered from a clinical specimen: novel chromogenic slow growing mycobacteria related to Mycobacterium terrae complex. Microbiol Immunol 54: 46-53.
27. Lee HK, Lee SA, Lee IK, Yu HK, Park YG, et al. (2010) Mycobacterium paraseoulense sp. nov., a slowly growing, scotochromogenic species related genetically to Mycobacterium seoulense. Int J Syst Evol Microbiol 60: 439-443.
28. Kim K, Lee H, Lee MK, Lee SA, Shim TS, et al. (2010) Development and application of multiprobe real-time PCR method targeting the hsp65 gene for differentiation of Mycobacterium species from isolates and sputum specimens. J Clin Microbiol 48: 3073-3080.
29. Fregnan GB, Smith DW, (1962) Description of Various Colony Forms of Mycobacteria. Journal of Bacteriology 83 819.
30. Howard ST, Rhoades E, Recht J, Pang X, Alsup A, et al. (2006) Spontaneous reversion of Mycobacterium abscessus from a smooth to a rough morphotype is associated with reduced expression of glycopeptidolipid and reacquisition of an invasive phenotype. Microbiology 152: 1581-1590.
31. Catherinot E, Clarissou J, Etienne G, Ripoll F, Emile JF, et al. (2007) Hypervirulence of a rough variant of the Mycobacterium abscessus type strain. Infect Immun 75: 1055-1058.
32. Rhoades ER, Archambault AS, Greendyke R, Hsu FF, Streeter C, et al. (2009) Mycobacterium abscessus Glycopeptidolipids mask underlying cell wall phosphatidyl-myo-inositol mannosides blocking induction of human macrophage TNF-alpha by preventing interaction with TLR2. J Immunol 183: 1997-2007.
33. Devallois A, Goh KS, Rastogi N, (1997) Rapid identification of mycobacteria to species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of an algorithm to differentiate 34 mycobacterial species. J Clin Microbiol 35: 2969-2973.
34. Lee H, Park HJ, Cho SN, Bai GH, Kim SJ, (2000) Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. J Clin Microbiol 38: 2966-2971.
35. Kim H, Kim SH, Shim TS, Kim MN, Bai GH, et al. (2005) PCR restriction fragment length polymorphism analysis (PRA)-algorithm targeting 644 bp Heat Shock Protein 65 (hsp65) gene for differentiation of Mycobacterium spp. J Microbiol Methods 62: 199-209.
36. Blauwendraat C, Dixon GL, Hartley JC, Foweraker J, Harris KA, (2012) The use of a two-gene sequencing approach to accurately distinguish between the species within the Mycobacterium abscessus complex and Mycobacterium chelonae. Eur J Clin Microbiol Infect Dis.
37. Choi GE, Chang CL, Whang J, Kim HJ, Kwon OJ, et al. (2011) Efficient differentiation of Mycobacterium abscessus complex isolates to the species level by a novel PCR-based variable-number tandem-repeat assay. J Clin Microbiol 49: 1107-1109.
38. Harris KA, Kenna DT, Blauwendraat C, Hartley JC, Turton JF, et al. (2012) Molecular Fingerprinting of Mycobacterium abscessus Strains in a Cohort of Pediatric Cystic Fibrosis Patients. J Clin Microbiol 50: 1758-1761.
39. Kim BJ, Choi BS, Lim JS, Choi IY, Lee JH, et al. (2012) Complete Genome Sequence of Mycobacterium intracellulare Clinical Strain MOTT-02. J Bacteriol 194: 2771.
40. Kim BJ, Choi BS, Lim JS, Choi IY, Lee JH, et al. (2012) Complete Genome Sequence of Mycobacterium intracellulare Strain ATCC 13950T. J Bacteriol 194: 2750.
41. Kim B-J, Choi B-S, Lim J-S, Choi I-Y, Kook Y-H, et al. (2012) Complete genome sequence of Mycobacterium intracelllulare clinical strain MOTT-64, belonging to the INT1 genotype. Journal of bacteriology.
42. Kim H, Ryoo S, (2011) Exploitation of Culture Medium for Mycobacterium tuberculosis. JOURNAL OF BACTERIOLOGY AND VIROLOGY 41: 237-244.
43. Kent PT, Kubica GP, (1985) Public health mycobacteriology: a guide for the level III laboratory. Atlanta Centers for Disease Control and Prevention.
44. Butler WR, Thibert L, Kilburn JO, (1992) Identification of Mycobacterium-Avium Complex Strains and Some Similar Species by High-Performance Liquid-Chromatography. J Clin Microbiol 30: 2698-2704.
45. Perez E, Constant P, Lemassu A, Laval F, Daffe M, et al. (2004) Characterization of three glycosyltransferases involved in the biosynthesis of the phenolic glycolipid antigens from the Mycobacterium tuberculosis complex. J Biol Chem 279: 42574-42583.
46. Kim BJ, Lee SH, Lyu MA, Kim SJ, Bai GH, et al. (1999) Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB). J Clin Microbiol 37: 1714-1720.
47. Kumar S, Nei M, Dudley J, Tamura K, (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9: 299-306.
48. Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
49. Fitch WM, (1971) Toward Defining Course of Evolution- Minimum Change for a Specific Tree Topology. Syst Zool 20: 406.
50. Meier A, Kirschner P, Springer B, Steingrube VA, Brown BA, et al. (1994) Identification of mutations in 23 S rRNA gene of clarithromycin-resistant Mycobacterium intracellulare. Antimicrob Agents Chemother 38: 381-384.